WMU65745 (transcribed_cluster) Watermelon (97103) v1

NameWMU65745
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionWRC (InterPro:
LocationChr10 : 23847631 .. 23848079 (-)
Sequence length436
The following sequences are available for this feature:

transcribed_cluster sequence

CATCACTTAGGAAAAGGTCGTCTCCGCAGCATGAACAACGTTCGCAACCGCTCTTTAGCCGCTGCCACCGCTACATCCAAGAACATCCTCATCATTGACAAAGACGAGAAGAAGCCATCTCCGTCTCCATTTCCACCACCGCCATCGTCATCTACGTTGGCTAGTAAGAAGAGAATGAAACTAGGTGTAGTGAAAGCGAGGTCAATAAGTAGCTTGCTCGGGCAACCCGACGGCATGGTGGTGACACCGCCGCTTCCTCCTCCGCCACCGAAGTTGCACGATGACAACATTGACGACTAGAAAACTATAATTTGTTACATAACTACTCCTTGATCTTTCGGTTAATTTTCAGTTTCGTCTTTTAATATTTAAATTTCCATTTAATGTTATGTCTTTGGTAAATTTTCAATTAGGTTGTTTTGTATAAAGAATGTTA
BLAST of WMU65745 vs. NCBI nr
Match: gi|659084724|ref|XP_008443038.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 1

Query: 1   HHLGKGRLRSMNNVRNRSLAAATATSKNILIIDKDEKKXXXXXXXXXXXXXT---LASKK 60
           HHLGKGRLRSMNNVRNRSLAAAT   KNI++I+KDEKK             +   L +KK
Sbjct: 190 HHLGKGRLRSMNNVRNRSLAAATP--KNIVVIEKDEKKPSPSQFPSSPPPPSSFSLTNKK 249

Query: 61  RMKLGVVKARSISSLLGQPDGMVVTXXXXXXXXKLHDDNID 120
           RMKLGVVKARSISSLLGQPDG+V T         LHDDNID
Sbjct: 250 RMKLGVVKARSISSLLGQPDGIVAT--PLSLPSTLHDDNID 286

Query: 121 180
           
Sbjct: 310 286

Query: 181 240
           
Sbjct: 370 286

Query: 241 295
           
Sbjct: 430 286

BLAST of WMU65745 vs. NCBI nr
Match: gi|659084726|ref|XP_008443039.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X3 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 1

Query: 1   HHLGKGRLRSMNNVRNRSLAAATATSKNILIIDKDEKKXXXXXXXXXXXXXT---LASKK 60
           HHLGKGRLRSMNNVRNRSLAAAT   KNI++I+KDEKK             +   L +KK
Sbjct: 189 HHLGKGRLRSMNNVRNRSLAAATP--KNIVVIEKDEKKPSPSQFPSSPPPPSSFSLTNKK 248

Query: 61  RMKLGVVKARSISSLLGQPDGMVVTXXXXXXXXKLHDDNID 120
           RMKLGVVKARSISSLLGQPDG+V T         LHDDNID
Sbjct: 249 RMKLGVVKARSISSLLGQPDGIVAT--PLSLPSTLHDDNID 285

Query: 121 180
           
Sbjct: 309 285

Query: 181 240
           
Sbjct: 369 285

Query: 241 295
           
Sbjct: 429 285

BLAST of WMU65745 vs. NCBI nr
Match: gi|659084722|ref|XP_008443037.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 1

Query: 1   HHLGKGRLRSMNNVRNRSLAAATATSKNILIIDKDEKKXXXXXXXXXXXXXT---LASKK 60
           HHLGKGRLRSMNNVRNRSLAAAT   KNI++I+KDEKK             +   L +KK
Sbjct: 197 HHLGKGRLRSMNNVRNRSLAAATP--KNIVVIEKDEKKPSPSQFPSSPPPPSSFSLTNKK 256

Query: 61  RMKLGVVKARSISSLLGQPDGMVVTXXXXXXXXKLHDDNID 120
           RMKLGVVKARSISSLLGQPDG+V T         LHDDNID
Sbjct: 257 RMKLGVVKARSISSLLGQPDGIVAT--PLSLPSTLHDDNID 293

Query: 121 180
           
Sbjct: 317 293

Query: 181 240
           
Sbjct: 377 293

Query: 241 295
           
Sbjct: 437 293

BLAST of WMU65745 vs. NCBI nr
Match: gi|778684741|ref|XP_011652086.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-18
Identity = 61/105 (58.10%), Postives = 68/105 (64.76%), Query Frame = 1

Query: 1   HHLGKGRLRSMNNVRNRSLAAATATSKNILIIDKDEKKXXXXXXXXXXXXX-------TL 60
           HHLGKGRLRSMNNVRNRSL AAT   KNI++++KDEKK                    +L
Sbjct: 187 HHLGKGRLRSMNNVRNRSLVAATP--KNIVVVEKDEKKPSPSPPPSPFPSSPPPPSSFSL 246

Query: 61  ASKKRMKLGVVKARSISSLLGQPDGMVVTXXXXXXXXKLHDDNID 120
            SKKRMKLGVVKARS+SSLLGQP+ M V          LHDDNID
Sbjct: 247 TSKKRMKLGVVKARSMSSLLGQPEAMAVA-TPLSPPSTLHDDNID 288

Query: 121 180
           
Sbjct: 307 288

Query: 181 240
           
Sbjct: 367 288

Query: 241 295
           
Sbjct: 427 288

BLAST of WMU65745 vs. NCBI nr
Match: gi|449437904|ref|XP_004136730.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-18
Identity = 61/105 (58.10%), Postives = 68/105 (64.76%), Query Frame = 1

Query: 1   HHLGKGRLRSMNNVRNRSLAAATATSKNILIIDKDEKKXXXXXXXXXXXXX-------TL 60
           HHLGKGRLRSMNNVRNRSL AAT   KNI++++KDEKK                    +L
Sbjct: 188 HHLGKGRLRSMNNVRNRSLVAATP--KNIVVVEKDEKKPSPSPPPSPFPSSPPPPSSFSL 247

Query: 61  ASKKRMKLGVVKARSISSLLGQPDGMVVTXXXXXXXXKLHDDNID 120
            SKKRMKLGVVKARS+SSLLGQP+ M V          LHDDNID
Sbjct: 248 TSKKRMKLGVVKARSMSSLLGQPEAMAVA-TPLSPPSTLHDDNID 289

Query: 121 180
           
Sbjct: 308 289

Query: 181 240
           
Sbjct: 368 289

Query: 241 295
           
Sbjct: 428 289

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659084724|ref|XP_008443038.1|2.1e-2064.36PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo][more]
gi|659084726|ref|XP_008443039.1|2.1e-2064.36PREDICTED: uncharacterized protein LOC103486754 isoform X3 [Cucumis melo][more]
gi|659084722|ref|XP_008443037.1|2.1e-2064.36PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo][more]
gi|778684741|ref|XP_011652086.1|4.3e-1858.10PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus][more]
gi|449437904|ref|XP_004136730.1|4.3e-1858.10PREDICTED: uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla017551Cla017551gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0133636S2_0133636EST