Cla017551 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla017551
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 23847774 .. 23849729 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTATCAGAAAACGCCAGCTCCCATTACCCTTCTCTTCTCTCTCTCCTCTCCCTCTTTCAGATCCCCTCCTCCCCCACTCTCCGCCGGTGCAACTCCCCCCCTCCTCCGATCCTCCAAATCTACTCCTCTTCCCCTCCGATAATGCCTTGGTTAGTATTCCCAACTCCAACTCTCTCTCTCTCTTTTCATTCCCATTTCTGATTTTCTAAATTGTTCCCAGGATATACATATATACTCCTCAATTAAAATTAATTCATGTCTGTTTATCACCCATCAACTCATGGGGTTGTCCGATTTTTGTGTGTAGGACAAGAATCAGAAGCTTCAACAACATGATTCCAGGTACCAAACTTCAAATCCCCCATTCTCTCTGTTCCTTCTTTCTTCCTTTCTCCAACAACTAGTAAAAAAAGTTCTTCTTTTTTATATATATTTTATATTTTTTTTTTTTATGAGTACCCAATAAAAATTGGGGTGGGGGGGGGGGGGAAAGGAGGGGCAAGTGGAAATACTGTTGGGATATATATTTTTTAATATATTATTTTTCATGAGTCTATTGTGCGCCCATGGGCTCTGCATGTTCTTCACTGGTCCACACCTCTCCCTTCCTCTTCTTCTTAACTTCTGTTCATCACTTACACTAATTGCATTTATTCTTTTGGTTCTCCATTATTTGTTTATTTTGCACTACAGACTAGCCTATGATTATTAATGTTGAGTTTGTATAATTGTTTTAGGGAAACAATTGTGATTGGTGCAGAAACAACCAATCATGGGGTTGTTCCACAATCCACCTCTTCTTCTCAAGGTCATTCCATTTACGATTTCTGGGCTGTTTCGCTTTTGCACTAAAATTTATTTGATTCTCCCTTCATTCTTTGTCACACACACACACACACACACACACACACACACACATATATTGGTATTCATAATACAGATCTAATCTGGTAATTCCATCTCTTTTTAATTGACAGTATTGATTGTGGTTTACTCAATTGCTTATATTTGTTGGGTCTGTAGCATGATAAGAAGAAAGTAACTCTCCTATGATAATATTAGTTTTTCGGAGTCATTTCTTGACGTATAACATATCAAGCTTAAGTGTTATTGGGTTGAGTAGTAATTTTTGTATTTAAATCTGCCTATTACACCACTTCTTCGCTTTATATAATTGATATGGAGGGGTTTATATAGACGTTTTCTAAAACATATTATAACTCATCAGCAGCGTAAGCTTTTATTTTCGAGTTTGTGATTTCAAGGTGACTTTTTTTTTTATTTATGTTGTTGTTTGGGTTTATGTTTGATGTGGTAGGTAATGGGCGATGGTGCGAGAAGGAGAAGACATTTCCATTAAAGAAGAGAAGGGGAAGCTTTGAGAGGTCGAGTGACAATGAGGATGAGGATGATCAAGTCGCCACCACCACTGTGAAGCCACTGCTGGACGAGAAGAAGGCAATGAAGACAAAGATGAACAAAAAATGCACATTATTGTCACAAAAGCAATCTAAACTGGGTCTTGACCTCGCCGGAAAAAAGAGGTTAAGAGGCGGTGCATTAATGGAGGGATCTCGGTGTAGTCGTGTCAATGGACGAGGATGGCGATGCTGCCAACAAACTCTTGTTGGTTATTCTCTCTGTGAACATCACTTAGGAAAAGGTCGTCTCCGCAGCATGGCGTGACCACCGTTCGAACCCGCTCTTTACCCGCTGCCCCCGCTACATCCAAGAACATCCTCATCATTGACAAAGACGAGAAGAAGCCATCTCCGTCTCCATTTCCACCACCGCCATCGTCATCTACGTTGGCCAGTAAGAAGAGAATGAAACTAGGTGTAGTGAAAGCGAGGTCAATAAGTAGCTTGCTCGGGCAACCCGACGGCATGGTGGTGACACCGCCGCTTCCTCCTCCGCCACCGAAGTTGCACGATGACAACATTGACGACTAG

mRNA sequence

ATGCGTATCAGAAAACGCCAGCTCCCATTACCCTTCTCTTCTCTCTCTCCTCTCCCTCTTTCAGATCCCCTCCTCCCCCACTCTCCGCCGGTGCAACTCCCCCCCTCCTCCGATCCTCCAAATCTACTCCTCTTCCCCTCCGATAATGCCTTGGACAAGAATCAGAAGCTTCAACAACATGATTCCAGGAAAAGGTCGTCTCCGCAGCATGGCGTGACCACCGTTCGAACCCGCTCTTTACCCGCTGCCCCCGCTACATCCAAGAACATCCTCATCATTGACAAAGACGAGAAGAAGCCATCTCCGTCTCCATTTCCACCACCGCCATCGTCATCTACGTTGGCCAGTAAGAAGAGAATGAAACTAGGTGTAGTGAAAGCGAGGTCAATAAGTAGCTTGCTCGGGCAACCCGACGGCATGGTGGTGACACCGCCGCTTCCTCCTCCGCCACCGAAGTTGCACGATGACAACATTGACGACTAG

Coding sequence (CDS)

ATGCGTATCAGAAAACGCCAGCTCCCATTACCCTTCTCTTCTCTCTCTCCTCTCCCTCTTTCAGATCCCCTCCTCCCCCACTCTCCGCCGGTGCAACTCCCCCCCTCCTCCGATCCTCCAAATCTACTCCTCTTCCCCTCCGATAATGCCTTGGACAAGAATCAGAAGCTTCAACAACATGATTCCAGGAAAAGGTCGTCTCCGCAGCATGGCGTGACCACCGTTCGAACCCGCTCTTTACCCGCTGCCCCCGCTACATCCAAGAACATCCTCATCATTGACAAAGACGAGAAGAAGCCATCTCCGTCTCCATTTCCACCACCGCCATCGTCATCTACGTTGGCCAGTAAGAAGAGAATGAAACTAGGTGTAGTGAAAGCGAGGTCAATAAGTAGCTTGCTCGGGCAACCCGACGGCATGGTGGTGACACCGCCGCTTCCTCCTCCGCCACCGAAGTTGCACGATGACAACATTGACGACTAG

Protein sequence

MRIRKRQLPLPFSSLSPLPLSDPLLPHSPPVQLPPSSDPPNLLLFPSDNALDKNQKLQQHDSRKRSSPQHGVTTVRTRSLPAAPATSKNILIIDKDEKKPSPSPFPPPPSSSTLASKKRMKLGVVKARSISSLLGQPDGMVVTPPLPPPPPKLHDDNIDD

Homology

[Close]

BLAST of Cla017551 vs. TrEMBL
Match: A0A0A0LGX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806230 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.4e-22
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 1


Query: 72  VTTVRTRSLPAAPATSKNILIIDKDEKKPSPSP-------FPPPPSSSTLASKKRMKLGV 131
           +  VR RSL AA  T KNI++++KDEKKPSPSP        PPPPSS +L SKKRMKLGV
Sbjct: 197 MNNVRNRSLVAA--TPKNIVVVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGV 256

Query: 132 VKARSISSLLGQPDGMVVTPPLPPPPPKLHDDNID 160
           VKARS+SSLLGQP+ M V  PL  PP  LHDDNID
Sbjct: 257 VKARSMSSLLGQPEAMAVATPL-SPPSTLHDDNID 288

[Close]

BLAST of Cla017551 vs. TrEMBL
Match: A0A0A0LGX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806230 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-05
Identity = 45/92 (48.91%), Postives = 52/92 (56.52%), Query Frame = 1


Query: 1  MRIRKRQLPLP-FSSLSPLPLSDPLLPHSPPVQLP-PSSDPPNLLLFPSDNALDKNQK-- 60
          MRIRKRQLPLP FSSLS            PPVQLP PSSDPP        N LD NQK  
Sbjct: 1  MRIRKRQLPLPTFSSLS-----------DPPVQLPLPSSDPP-------INPLDNNQKQK 60

Query: 61 -LQQHDSRKRSSPQHGVTTVRTRSLPAAPATS 88
           LQQ+DSR+  +   G  T+    LP + ++S
Sbjct: 61 LLQQYDSRE--TILIGAETINNALLPHSSSSS 72

HSP 2 Score: 58.5 bits (140), Expect = 8.4e-06
Identity = 38/89 (42.70%), Postives = 48/89 (53.93%), Query Frame = 1


Query: 1  MRIRKRQLPLPFSSLSPLPLSDPLLPHSPPVQL-----------PPSSDPPNLLLFPSDN 60
          MRIRKR++P P SSLSP+PLSDP L  SP VQL           P SS+PP   +   +N
Sbjct: 1  MRIRKRKVPFPLSSLSPVPLSDPNLRRSPVVQLQLEDDTAAYFNPSSSNPP---IGDGNN 60

Query: 61 ALDKNQKLQQHDSRKRSSPQHGVTTVRTR 79
             +  K +  DS K    + G T+  TR
Sbjct: 61 PYQEEVKKEAKDSPKDEGGRDGETSNYTR 86

[Close]

BLAST of Cla017551 vs. TrEMBL
Match: A0A067JP86_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25554 PE=4 SV=1)

HSP 1 Score: 40.4 bits (93), Expect = 2.4e+00
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 1


Query: 116 SKKRMKLGVVKARSISSLLGQ 137
           SKK+MKLGVVKARSISSLLGQ
Sbjct: 282 SKKKMKLGVVKARSISSLLGQ 302

[Close]

BLAST of Cla017551 vs. NCBI nr
Match: gi|778684741|ref|XP_011652086.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 1


Query: 72  VTTVRTRSLPAAPATSKNILIIDKDEKKPSPSP-------FPPPPSSSTLASKKRMKLGV 131
           +  VR RSL AA  T KNI++++KDEKKPSPSP        PPPPSS +L SKKRMKLGV
Sbjct: 197 MNNVRNRSLVAA--TPKNIVVVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGV 256

Query: 132 VKARSISSLLGQPDGMVVTPPLPPPPPKLHDDNID 160
           VKARS+SSLLGQP+ M V  PL  PP  LHDDNID
Sbjct: 257 VKARSMSSLLGQPEAMAVATPL-SPPSTLHDDNID 288

[Close]

BLAST of Cla017551 vs. NCBI nr
Match: gi|778684741|ref|XP_011652086.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 6.0e-05
Identity = 45/92 (48.91%), Postives = 52/92 (56.52%), Query Frame = 1


Query: 1  MRIRKRQLPLP-FSSLSPLPLSDPLLPHSPPVQLP-PSSDPPNLLLFPSDNALDKNQK-- 60
          MRIRKRQLPLP FSSLS            PPVQLP PSSDPP        N LD NQK  
Sbjct: 1  MRIRKRQLPLPTFSSLS-----------DPPVQLPLPSSDPP-------INPLDNNQKQK 60

Query: 61 -LQQHDSRKRSSPQHGVTTVRTRSLPAAPATS 88
           LQQ+DSR+  +   G  T+    LP + ++S
Sbjct: 61 LLQQYDSRE--TILIGAETINNALLPHSSSSS 72

HSP 2 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 1


Query: 72  VTTVRTRSLPAAPATSKNILIIDKDEKKPSPSP-------FPPPPSSSTLASKKRMKLGV 131
           +  VR RSL AA  T KNI++++KDEKKPSPSP        PPPPSS +L SKKRMKLGV
Sbjct: 198 MNNVRNRSLVAA--TPKNIVVVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGV 257

Query: 132 VKARSISSLLGQPDGMVVTPPLPPPPPKLHDDNID 160
           VKARS+SSLLGQP+ M V  PL  PP  LHDDNID
Sbjct: 258 VKARSMSSLLGQPEAMAVATPL-SPPSTLHDDNID 289

[Close]

BLAST of Cla017551 vs. NCBI nr
Match: gi|449437904|ref|XP_004136730.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 45/95 (47.37%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 1  MRIRKRQLPLP-FSSLSPLPLSDPLLPHSPPVQLP-PSSDPPNLLLFPSDNALDKNQK-- 60
          MRIRKRQLPLP FSSLS            PPVQLP PSSDPP        N LD NQK  
Sbjct: 1  MRIRKRQLPLPTFSSLS-----------DPPVQLPLPSSDPP-------INPLDNNQKQK 60

Query: 61 -LQQHDSRKRSSPQHGVTTVRTRSLPAAPATSKNI 91
           LQQ+DSR+  +   G  T+    LP + ++S  +
Sbjct: 61 LLQQYDSRE--TILIGAETINNALLPHSSSSSSQV 75

HSP 2 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 63/91 (69.23%), Postives = 70/91 (76.92%), Query Frame = 1


Query: 72  VTTVRTRSLPAAPATSKNILIIDKDEKKPSPSPFP---PPPSSSTLASKKRMKLGVVKAR 131
           +  VR RSL AA  T KNI++I+KDEKKPSPS FP   PPPSS +L +KKRMKLGVVKAR
Sbjct: 200 MNNVRNRSLAAA--TPKNIVVIEKDEKKPSPSQFPSSPPPPSSFSLTNKKRMKLGVVKAR 259

Query: 132 SISSLLGQPDGMVVTPPLPPPPPKLHDDNID 160
           SISSLLGQPDG+V TP     P  LHDDNID
Sbjct: 260 SISSLLGQPDGIVATP--LSLPSTLHDDNID 286

[Close]

BLAST of Cla017551 vs. NCBI nr
Match: gi|659084724|ref|XP_008443038.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo])

HSP 1 Score: 50.8 bits (120), Expect = 2.5e-03
Identity = 41/94 (43.62%), Postives = 51/94 (54.26%), Query Frame = 1


Query: 1  MRIRKRQLPLP-FSSLSPLPLSDPLLPHSPPVQL-----PPSSDPPNLLLFPSDNALDKN 60
          MRIRKRQLPLP FSSLS            PPVQL       SSDPP   + P DN   K 
Sbjct: 1  MRIRKRQLPLPAFSSLS-----------DPPVQLHLPSSSSSSDPP---INPLDNNNQKQ 60

Query: 61 QKLQQHDSRKRSSPQHGVTTVRTRSLPAAPATSK 89
          + LQQ+DSR+  +   G  T+    LP + ++S+
Sbjct: 61 KLLQQYDSRE--TILIGAETINNALLPHSSSSSQ 78

HSP 2 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 63/91 (69.23%), Postives = 70/91 (76.92%), Query Frame = 1


Query: 72  VTTVRTRSLPAAPATSKNILIIDKDEKKPSPSPFP---PPPSSSTLASKKRMKLGVVKAR 131
           +  VR RSL AA  T KNI++I+KDEKKPSPS FP   PPPSS +L +KKRMKLGVVKAR
Sbjct: 207 MNNVRNRSLAAA--TPKNIVVIEKDEKKPSPSQFPSSPPPPSSFSLTNKKRMKLGVVKAR 266

Query: 132 SISSLLGQPDGMVVTPPLPPPPPKLHDDNID 160
           SISSLLGQPDG+V TP     P  LHDDNID
Sbjct: 267 SISSLLGQPDGIVATP--LSLPSTLHDDNID 293

[Close]

BLAST of Cla017551 vs. NCBI nr
Match: gi|659084722|ref|XP_008443037.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo])

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-04
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 1


Query: 1  MRIRKRQLPLP-FSSLSPLPLSDPLLPHSPPVQL-----PPSSDPPNLLLFPSDNALDKN 60
          MRIRKRQLPLP FSSLS            PPVQL       SSDPP   + P DN   K 
Sbjct: 1  MRIRKRQLPLPAFSSLS-----------DPPVQLHLPSSSSSSDPP---INPLDNNNQKQ 60

Query: 61 QKLQQHDSRKRSSPQHGVTTVRTRSLPAAPATSKNILIID 95
          + LQQ+DSR+  +   G  T+    LP + ++S+ +++ D
Sbjct: 61 KLLQQYDSRE--TILIGAETINNALLPHSSSSSQVVVVFD 84

HSP 2 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 63/91 (69.23%), Postives = 70/91 (76.92%), Query Frame = 1


Query: 72  VTTVRTRSLPAAPATSKNILIIDKDEKKPSPSPFP---PPPSSSTLASKKRMKLGVVKAR 131
           +  VR RSL AA  T KNI++I+KDEKKPSPS FP   PPPSS +L +KKRMKLGVVKAR
Sbjct: 199 MNNVRNRSLAAA--TPKNIVVIEKDEKKPSPSQFPSSPPPPSSFSLTNKKRMKLGVVKAR 258

Query: 132 SISSLLGQPDGMVVTPPLPPPPPKLHDDNID 160
           SISSLLGQPDG+V TP     P  LHDDNID
Sbjct: 259 SISSLLGQPDGIVATP--LSLPSTLHDDNID 285

The following BLAST results are available for this feature:

BLAST of Cla017551 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGX5_CUCSA	8.4e-22	65.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806230 PE=4 SV=1	[more]
A0A0A0LGX5_CUCSA	4.2e-05	48.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806230 PE=4 SV=1	[more]
A0A067JP86_JATCU	2.4e+00	95.24	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25554 PE=4 SV=1	[more]

BLAST of Cla017551 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778684741\|ref\|XP_011652086.1\|	1.2e-21	65.26	PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus]	[more]
gi\|778684741\|ref\|XP_011652086.1\|	6.0e-05	48.91	PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus]	[more]
gi\|449437904\|ref\|XP_004136730.1\|	2.7e-05	47.37	PREDICTED: uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus]	[more]
gi\|659084724\|ref\|XP_008443038.1\|	2.5e-03	43.62	PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo]	[more]
gi\|659084722\|ref\|XP_008443037.1\|	1.7e-04	42.00	PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032502	developmental process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU05368	watermelon EST collection version 2.0	transcribed_cluster
WMU42143	watermelon EST collection version 2.0	transcribed_cluster
WMU60699	watermelon EST collection version 2.0	transcribed_cluster
WMU65745	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla017551	Cla017551.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU05368	WMU05368	transcribed_cluster
WMU65745	WMU65745	transcribed_cluster
WMU42143	WMU42143	transcribed_cluster
WMU60699	WMU60699	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla017551	Cla97C10G200470	Watermelon (97103) v2	wmwmbB051
Cla017551	Csa3G806230	Cucumber (Chinese Long) v2	cuwmB198
Cla017551	MELO3C009616	Melon (DHL92) v3.5.1	mewmB346
Cla017551	ClCG10G017600	Watermelon (Charleston Gray)	wcgwmB051
Cla017551	CSPI03G36370	Wild cucumber (PI 183967)	cpiwmB198
Cla017551	Cucsa.242590	Cucumber (Gy14) v1	cgywmB456
Cla017551	CmaCh14G004120	Cucurbita maxima (Rimu)	cmawmB228
Cla017551	CmoCh14G004160	Cucurbita moschata (Rifu)	cmowmB214
Cla017551	Lsi03G017440	Bottle gourd (USVL1VR-Ls)	lsiwmB240
Cla017551	Cp4.1LG03g04070	Cucurbita pepo (Zucchini)	cpewmB597
Cla017551	CsGy3G033830	Cucumber (Gy14) v2	cgybwmB187
Cla017551	MELO3C009616.2	Melon (DHL92) v3.6.1	medwmB344
Cla017551	Carg01222	Silver-seed gourd	carwmB0148
Cla017551	Carg03576	Silver-seed gourd	carwmB0237
Cla017551	CsaV3_3G038720	Cucumber (Chinese Long) v3	cucwmB208
Cla017551	Bhi11G002111	Wax gourd	wgowmB022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla017551	Watermelon (97103) v1	wmwmB051
Cla017551	Cucurbita maxima (Rimu)	cmawmB781
Cla017551	Cucurbita moschata (Rifu)	cmowmB774
Cla017551	Melon (DHL92) v3.6.1	medwmB392
Cla017551	Cucumber (Chinese Long) v3	cucwmB308