WMU59382 (transcribed_cluster) Watermelon (97103) v1

NameWMU59382
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr1 : 16232088 .. 16259855 (+)
Sequence length193
The following sequences are available for this feature:

transcribed_cluster sequence

GAGAGGAGAGATGGTTGGAAAGAGAGGGACCTAAATCGTCTAGGATGTCTGCGATTACTACTTTGGCTCCATGCTTAAAGAAGTGTCTTGCAATGGACTCCCCAATTCCTCTGGCTGCACCTGTTGATTATTAAGACCACTTTGCCTTCTAGTCTTCTCGCAGCGGCTGGAAGCAAGGGGACGCCCCATGGCT
BLAST of WMU59382 vs. TAIR10
Match: AT1G52340.1 (AT1G52340.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 1.8e-06
Identity = 24/39 (61.54%), Postives = 24/39 (61.54%), Query Frame = -1

Query: 8   TGAARGIGESIARHFFKHGAKVVIADILDDLGPSLSNHL 67
           TG A GIGESI R F KHGAKV I D+ DDLG  +   L
Sbjct: 26  TGGATGIGESIVRLFHKHGAKVCIVDLQDDLGGEVCKSL 64

Query: 68  125
           
Sbjct: 86  64

BLAST of WMU59382 vs. NCBI nr
Match: gi|449443650|ref|XP_004139590.1| (PREDICTED: secoisolariciresinol dehydrogenase [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 8.5e-11
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = -1

Query: 2   TGAARGIGESIARHFFKHGAKVVIADILDDLGPSLSNHLSS 61
           TG ARGIGESIA+HFF  GAKVVIADILDDLG SLSNHLSS
Sbjct: 21  TGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLSS 61

Query: 62  121
           
Sbjct: 81  61

Query: 122 125
           
Sbjct: 141 61

BLAST of WMU59382 vs. NCBI nr
Match: gi|743796904|ref|XP_011006659.1| (PREDICTED: momilactone A synthase-like [Populus euphratica])

HSP 1 Score: 61.2 bits (147), Expect = 7.4e-07
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = -1

Query: 2   TGAARGIGESIARHFFKHGAKVVIADILDDLGPSLSNHLSS 61
           TG ARGIGES ARHFFKHGAKVVIAD  D+L  S+   L+S
Sbjct: 22  TGGARGIGESTARHFFKHGAKVVIADTQDELAHSVCKDLNS 62

Query: 62  121
           
Sbjct: 82  62

Query: 122 125
           
Sbjct: 142 62

BLAST of WMU59382 vs. NCBI nr
Match: gi|566167707|ref|XP_006384780.1| (alcohol dehydroge family protein [Populus trichocarpa])

HSP 1 Score: 61.2 bits (147), Expect = 7.4e-07
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = -1

Query: 2   TGAARGIGESIARHFFKHGAKVVIADILDDLGPSLSNHLSS 61
           TG ARGIGES ARHFFKHGAKVVIAD  D+L  S+   L+S
Sbjct: 22  TGGARGIGESTARHFFKHGAKVVIADTQDELAHSVCKDLNS 62

Query: 62  121
           
Sbjct: 82  62

Query: 122 125
           
Sbjct: 142 62

BLAST of WMU59382 vs. NCBI nr
Match: gi|976915470|gb|KVI01412.1| (Glucose/ribitol dehydrogenase [Cynara cardunculus var. scolymus])

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-07
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = -1

Query: 20  TGAARGIGESIARHFFKHGAKVVIADILDDLGPSL 79
           TG ARGIGESIAR F KHGAKV+IAD+LDDLG S+
Sbjct: 12  TGGARGIGESIARLFTKHGAKVIIADVLDDLGQSV 46

Query: 80  125
           
Sbjct: 72  46

BLAST of WMU59382 vs. NCBI nr
Match: gi|731344741|ref|XP_010683578.1| (PREDICTED: short-chain dehydrogenase reductase 2a-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = -1

Query: 5   TGAARGIGESIARHFFKHGAKVVIADILDDLGPSLSNHLS 64
           TG ARGIGE+I R F  HGAKVVIADILD+LG S++N LS
Sbjct: 38  TGGARGIGEAIVRLFASHGAKVVIADILDNLGMSIANSLS 77

Query: 65  124
           
Sbjct: 98  77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G52340.11.8e-0661.54 NAD(P)-binding Rossmann-fold superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449443650|ref|XP_004139590.1|8.5e-1187.80PREDICTED: secoisolariciresinol dehydrogenase [Cucumis sativus][more]
gi|743796904|ref|XP_011006659.1|7.4e-0770.73PREDICTED: momilactone A synthase-like [Populus euphratica][more]
gi|566167707|ref|XP_006384780.1|7.4e-0770.73alcohol dehydroge family protein [Populus trichocarpa][more]
gi|976915470|gb|KVI01412.1|9.7e-0780.00Glucose/ribitol dehydrogenase [Cynara cardunculus var. scolymus][more]
gi|731344741|ref|XP_010683578.1|1.3e-0672.50PREDICTED: short-chain dehydrogenase reductase 2a-like [Beta vulgaris subsp. vul... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla011055Cla011055gene
Cla011053Cla011053gene
Cla011054Cla011054gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0016897S2_0016897EST