WMU55223 (transcribed_cluster) Watermelon (97103) v1

NameWMU55223
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPeptidyl-prolyl cis-trans isomerase
LocationChr5 : 497638 .. 501019 (+)
Sequence length509
The following sequences are available for this feature:

transcribed_cluster sequence

GGTTAAGGTAATAGCACCAGAGACCTATGTTAAACGTTGACTCTGGGCTCATATATTGGGATATCGAAGTTGGTAATGGTGATTGCCCCAAGGATGGTCAGCAGGTGATCTTTCACTATGTCGGCTATAATGAATCTGGTCGTCGAATTGACAGCACATACTTACAGGGTTACTCCTGCCAGAATCCGTGTGGGCACTAATGCGTTGGTCCCCAGGATTTGAGGAAGGAATTCGAGGCATGAGACCAGGGGGAAAGAGGAGAATAATAATTCCACCAGAACTTGGACCACCTGTGGGGCCTTCCACATTTTTCAGCTCAAAGCAGTTTGAAGTCTTTGATGTGGAACTGTTAAGCGTCCAGGATTGTCAGAGGAGGACAATAGCCTTTTACTCTGATATTGTTTGCAACTAGAAATTGAAGGTTGTTCTTTTTGAGGTACAGGATCTTTGAGATGAATCAACCTAAGAATGTCCATACTGCTCTATGTATATGCCGACCTTTTGGAAAA
BLAST of WMU55223 vs. TAIR10
Match: AT3G60370.1 (AT3G60370.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 118.6 bits (296), Expect = 3.7e-27
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 2

Query: 212 PGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRT-IAF 271
           PGFE GIR M+PGG+RRIIIPPELGPPVGPSTFFSSKQFEVFDVELLS+Q+C+RRT I F
Sbjct: 176 PGFEMGIRDMKPGGRRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSIQNCERRTIIGF 235

Query: 272 YSDIVCN 331
           YSD+ C+
Sbjct: 236 YSDVTCS 242

Query: 332 391
           
Sbjct: 296 242

Query: 392 410
           
Sbjct: 356 242


HSP 2 Score: 81.6 bits (200), Expect = 5.0e-16
Identity = 36/47 (76.60%), Postives = 37/47 (78.72%), Query Frame = 3

Query: 30  LNVDSGLIYWDIEVGNGDCPKDGQQVIFHYVGYNESGRRIDSTYLQG 89
           +  DSGLIY D  VG GD PKDGQQV FHY+GYNESGRRIDSTY+QG
Sbjct: 116 IKADSGLIYRDFNVGQGDFPKDGQQVTFHYIGYNESGRRIDSTYIQG 162

Query: 90  149
           
Sbjct: 176 162

Query: 150 171
           
Sbjct: 236 162

BLAST of WMU55223 vs. Swiss-Prot
Match: FK202_ARATH (Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP20-2 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.5e-26
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 2

Query: 212 PGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRT-IAF 271
           PGFE GIR M+PGG+RRIIIPPELGPPVGPSTFFSSKQFEVFDVELLS+Q+C+RRT I F
Sbjct: 176 PGFEMGIRDMKPGGRRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSIQNCERRTIIGF 235

Query: 272 YSDIVCN 331
           YSD+ C+
Sbjct: 236 YSDVTCS 242

Query: 332 391
           
Sbjct: 296 242

Query: 392 410
           
Sbjct: 356 242


HSP 2 Score: 81.6 bits (200), Expect = 8.8e-15
Identity = 36/47 (76.60%), Postives = 37/47 (78.72%), Query Frame = 3

Query: 30  LNVDSGLIYWDIEVGNGDCPKDGQQVIFHYVGYNESGRRIDSTYLQG 89
           +  DSGLIY D  VG GD PKDGQQV FHY+GYNESGRRIDSTY+QG
Sbjct: 116 IKADSGLIYRDFNVGQGDFPKDGQQVTFHYIGYNESGRRIDSTYIQG 162

Query: 90  149
           
Sbjct: 176 162

Query: 150 171
           
Sbjct: 236 162

BLAST of WMU55223 vs. NCBI nr
Match: gi|449431986|ref|XP_004133781.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 5.7e-30
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 2

Query: 212 PGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRTIAFY 271
           PGFEEGIRGMRPGGKRR+IIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRTI FY
Sbjct: 195 PGFEEGIRGMRPGGKRRMIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRTIGFY 254

Query: 272 SDIVCN 331
           SDIVCN
Sbjct: 255 SDIVCN 260

Query: 332 391
           
Sbjct: 315 260

Query: 392 410
           
Sbjct: 375 260

BLAST of WMU55223 vs. NCBI nr
Match: gi|659074833|ref|XP_008437821.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 9.7e-30
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 2

Query: 212 PGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRTIAFY 271
           PGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRTI FY
Sbjct: 195 PGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRTIGFY 254

Query: 272 SDIVCN 331
           SDIVC+
Sbjct: 255 SDIVCS 260

Query: 332 391
           
Sbjct: 315 260

Query: 392 410
           
Sbjct: 375 260

BLAST of WMU55223 vs. NCBI nr
Match: gi|823147751|ref|XP_012473787.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic isoform X1 [Gossypium raimondii])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 2

Query: 212 PGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRTIAFY 271
           PGFEEGIR MRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFD+ELLS+Q+CQRRTIAFY
Sbjct: 190 PGFEEGIRAMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDIELLSIQNCQRRTIAFY 249

Query: 272 SDIVCN 331
           SD+VCN
Sbjct: 250 SDVVCN 255

Query: 332 391
           
Sbjct: 310 255

Query: 392 410
           
Sbjct: 370 255

BLAST of WMU55223 vs. NCBI nr
Match: gi|728811611|gb|KHG00317.1| (Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic -like protein [Gossypium arboreum])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 2

Query: 212 PGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRTIAFY 271
           PGFEEGIR MRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFD+ELLS+Q+CQRRTIAFY
Sbjct: 190 PGFEEGIRAMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDIELLSIQNCQRRTIAFY 249

Query: 272 SDIVCN 331
           SD+VCN
Sbjct: 250 SDVVCN 255

Query: 332 391
           
Sbjct: 310 255

Query: 392 410
           
Sbjct: 370 255

BLAST of WMU55223 vs. NCBI nr
Match: gi|823147753|ref|XP_012473788.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic isoform X2 [Gossypium raimondii])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 2

Query: 212 PGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQDCQRRTIAFY 271
           PGFEEGIR MRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFD+ELLS+Q+CQRRTIAFY
Sbjct: 188 PGFEEGIRAMRPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDIELLSIQNCQRRTIAFY 247

Query: 272 SDIVCN 331
           SD+VCN
Sbjct: 248 SDVVCN 253

Query: 332 391
           
Sbjct: 308 253

Query: 392 410
           
Sbjct: 368 253

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT3G60370.13.7e-2782.09 FKBP-like peptidyl-prolyl cis-trans isomerase family protein[more]
Match NameE-valueIdentityDescription
FK202_ARATH6.5e-2682.09Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic OS=Arabidopsis thali... [more]
Match NameE-valueIdentityDescription
gi|449431986|ref|XP_004133781.1|5.7e-3096.97PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis ... [more]
gi|659074833|ref|XP_008437821.1|9.7e-3096.97PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis ... [more]
gi|823147751|ref|XP_012473787.1|3.7e-2992.42PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic isoform X... [more]
gi|728811611|gb|KHG00317.1|3.7e-2992.42Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic -like protein [Gossy... [more]
gi|823147753|ref|XP_012473788.1|3.7e-2992.42PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic isoform X... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021108Cla021108gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0113407S1_0113407EST