WMU54420 (transcribed_cluster) Watermelon (97103) v1

NameWMU54420
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionDNA binding
LocationChr5 : 25735817 .. 25736343 (-)
Sequence length448
The following sequences are available for this feature:

transcribed_cluster sequence

TGGGAAGGTTGCTTTCAGCCGTGAAAAAACATTCAAATACCAACTAACGCCGGGGGGACTGGAGCGGCAACGTCGCATAAGGTGCAATGATGGAATTCTTCAAAACTCTTGCTCCAAGTCTCTGGAGAGAAGCTAAACTACTCTTCTTATCCATCCAAAATCGAAGCCCTAGGCAAGCCCAATTTGGTTTCTCTCGATGATTTTTACCGAAACGAACTCCCTCTTCTTCTCCACGAGCGAAACCCTAGCCCTTACATCACTACTTCTGAGCTCTCAAAACTCATGCAATGGAAGCTCACTCGAGGAAAATGGAGGCCGCGTCTCTTAGACTTCGTTTCGTCATTGGACGAATCCCTCGTCAAAATTGGCTTCTCAAAAGGCCTTTCAATGCCTTCCTGATATTTCTAAAGCCGTGTCTGAGCTTATGCCACTCCAAAAGGCCGTTGGT
BLAST of WMU54420 vs. TAIR10
Match: AT3G12210.2 (AT3G12210.2 DNA binding)

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-28
Identity = 59/85 (69.41%), Postives = 70/85 (82.35%), Query Frame = 1

Query: 142 SSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELSKLMQWKLTRGKWRPR 201
           SSY S+IE+L KP LVSLD FYR +LP LLH+R+P+PY+TTSELS+LM+WKL+RGKWRPR
Sbjct: 18  SSYDSRIESLNKPELVSLDQFYRIKLPCLLHDRDPNPYLTTSELSQLMKWKLSRGKWRPR 77

Query: 202 LLDFVSSLDESLVKIGFSKGL-SMP 261
           LLDFVSSLD+S+VK    K   S+P
Sbjct: 78  LLDFVSSLDDSVVKSASEKAFKSLP 102

Query: 262 321
           
Sbjct: 138 102

Query: 322 381
           
Sbjct: 198 102

Query: 382 394
           
Sbjct: 258 102


HSP 2 Score: 35.0 bits (79), Expect = 4.7e-02
Identity = 20/29 (68.97%), Postives = 20/29 (68.97%), Query Frame = 2

Query: 362 KLASQKAFQCLPDISKAVSELMPLQKAVG 421
           K AS+KAF+ LPDISKAV EL  L K VG
Sbjct: 91  KSASEKAFKSLPDISKAVKELTVL-KGVG 118

Query: 422 449
           
Sbjct: 151 118

BLAST of WMU54420 vs. NCBI nr
Match: gi|449447089|ref|XP_004141302.1| (PREDICTED: uncharacterized protein LOC101204707 isoform X1 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 8.2e-33
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 1

Query: 142 SSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELSKLMQWKLTRGKWRPR 201
           S+Y S+IEALGKPNLVSLDDFYRNELPL+LH+RNPSPYITTSELSKLMQWKLTRGKWRPR
Sbjct: 17  STYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELSKLMQWKLTRGKWRPR 76

Query: 202 LLDFVSSLDESLVKIGFSK 261
           LLDFVSSLDESLVK+   K
Sbjct: 77  LLDFVSSLDESLVKLASQK 95

Query: 262 321
           
Sbjct: 137 95

Query: 322 379
           
Sbjct: 197 95

BLAST of WMU54420 vs. NCBI nr
Match: gi|778696518|ref|XP_011654161.1| (PREDICTED: uncharacterized protein LOC101204707 isoform X2 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 8.2e-33
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 1

Query: 142 SSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELSKLMQWKLTRGKWRPR 201
           S+Y S+IEALGKPNLVSLDDFYRNELPL+LH+RNPSPYITTSELSKLMQWKLTRGKWRPR
Sbjct: 17  STYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSELSKLMQWKLTRGKWRPR 76

Query: 202 LLDFVSSLDESLVKIGFSK 261
           LLDFVSSLDESLVK+   K
Sbjct: 77  LLDFVSSLDESLVKLASQK 95

Query: 262 321
           
Sbjct: 137 95

Query: 322 379
           
Sbjct: 197 95

BLAST of WMU54420 vs. NCBI nr
Match: gi|659103683|ref|XP_008452685.1| (PREDICTED: uncharacterized protein LOC103493629 isoform X2 [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-32
Identity = 70/79 (88.61%), Postives = 74/79 (93.67%), Query Frame = 1

Query: 142 SSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELSKLMQWKLTRGKWRPR 201
           SSY S+IEALGKPNLVSLDDFYRNELPL+LH+R PSPYITTSELSKLMQWKLTRGKWRPR
Sbjct: 16  SSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELSKLMQWKLTRGKWRPR 75

Query: 202 LLDFVSSLDESLVKIGFSK 261
           LLDFVSSLDESLVK+   K
Sbjct: 76  LLDFVSSLDESLVKLASQK 94

Query: 262 321
           
Sbjct: 136 94

Query: 322 379
           
Sbjct: 196 94

BLAST of WMU54420 vs. NCBI nr
Match: gi|659103680|ref|XP_008452684.1| (PREDICTED: uncharacterized protein LOC103493629 isoform X1 [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-32
Identity = 70/79 (88.61%), Postives = 74/79 (93.67%), Query Frame = 1

Query: 142 SSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELSKLMQWKLTRGKWRPR 201
           SSY S+IEALGKPNLVSLDDFYRNELPL+LH+R PSPYITTSELSKLMQWKLTRGKWRPR
Sbjct: 16  SSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELSKLMQWKLTRGKWRPR 75

Query: 202 LLDFVSSLDESLVKIGFSK 261
           LLDFVSSLDESLVK+   K
Sbjct: 76  LLDFVSSLDESLVKLASQK 94

Query: 262 321
           
Sbjct: 136 94

Query: 322 379
           
Sbjct: 196 94

BLAST of WMU54420 vs. NCBI nr
Match: gi|590596743|ref|XP_007018420.1| (Gb:AAF48080.1 [Theobroma cacao])

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-29
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = 1

Query: 142 SSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELSKLMQWKLTRGKWRPR 201
           SSY S+IE+L KPNLVSLD+FYRNELP LLH+RNP+P+ITTSELS+LMQWKLTRGKWRPR
Sbjct: 18  SSYKSRIESLDKPNLVSLDEFYRNELPPLLHQRNPNPFITTSELSRLMQWKLTRGKWRPR 77

Query: 202 LLDFVSSLDESLVKIGFSKGL-SMP 261
           LLDFVSSLD+SLVK    K   S+P
Sbjct: 78  LLDFVSSLDDSLVKSASQKAFQSLP 102

Query: 262 321
           
Sbjct: 138 102

Query: 322 381
           
Sbjct: 198 102

Query: 382 394
           
Sbjct: 258 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT3G12210.22.9e-2869.41 DNA binding[more]
Match NameE-valueIdentityDescription
gi|449447089|ref|XP_004141302.1|8.2e-3388.61PREDICTED: uncharacterized protein LOC101204707 isoform X1 [Cucumis sativus][more]
gi|778696518|ref|XP_011654161.1|8.2e-3388.61PREDICTED: uncharacterized protein LOC101204707 isoform X2 [Cucumis sativus][more]
gi|659103683|ref|XP_008452685.1|1.8e-3288.61PREDICTED: uncharacterized protein LOC103493629 isoform X2 [Cucumis melo][more]
gi|659103680|ref|XP_008452684.1|1.8e-3288.61PREDICTED: uncharacterized protein LOC103493629 isoform X1 [Cucumis melo][more]
gi|590596743|ref|XP_007018420.1|1.5e-2977.65Gb:AAF48080.1 [Theobroma cacao][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla020904Cla020904gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0101066S1_0101066EST