WMU49126 (transcribed_cluster) Watermelon (97103) v1

NameWMU49126
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr5 : 9592672 .. 9592849 (-)
Sequence length181
The following sequences are available for this feature:

transcribed_cluster sequence

AAGTCCAGAGTGGAGAACCTTCATGATTGATAAACAAACATCCAAACCAATGAAGTCTGCAAGCTCCAAGGGACCCATGGGGAGTGATTTTGTTTCCTAGCTTCATTCCCGTGTCGATGTCTTCCTTCGTTGCCACTCCCGTGAAGAGAGCAAAAATAGCCTCGTTAATCATCGGCATTAG
BLAST of WMU49126 vs. TAIR10
Match: AT3G15290.1 (AT3G15290.1 3-hydroxyacyl-CoA dehydrogenase family protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-07
Identity = 23/26 (88.46%), Postives = 22/26 (84.62%), Query Frame = -2

Query: 4   PMGPLELADFIGLDVCLSIMKVLHSG 63
           PMGPLELAD IGLDVCLS+MKVLH G
Sbjct: 226 PMGPLELADLIGLDVCLSVMKVLHEG 251

Query: 64  82
           
Sbjct: 286 251


HSP 2 Score: 49.3 bits (116), Expect = 9.7e-07
Identity = 23/29 (79.31%), Postives = 23/29 (79.31%), Query Frame = -1

Query: 95  LMPMINEAIFALFTGVATKEDIDTGMKLG 154
           LMPMINEA   L+TGVATKEDID+GMK G
Sbjct: 194 LMPMINEAFHTLYTGVATKEDIDSGMKHG 222

Query: 155 182
           
Sbjct: 254 222

BLAST of WMU49126 vs. Swiss-Prot
Match: HBD_BRADU (3-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=hbdA PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-06
Identity = 23/26 (88.46%), Postives = 22/26 (84.62%), Query Frame = -2

Query: 4   PMGPLELADFIGLDVCLSIMKVLHSG 63
           PMGPLELADFIGLD CLSIM+VLH G
Sbjct: 227 PMGPLELADFIGLDTCLSIMQVLHEG 252

Query: 64  82
           
Sbjct: 287 252

BLAST of WMU49126 vs. Swiss-Prot
Match: HBD_BACSU (Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgB PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-06
Identity = 23/26 (88.46%), Postives = 22/26 (84.62%), Query Frame = -2

Query: 4   PMGPLELADFIGLDVCLSIMKVLHSG 63
           PMGPL LADFIGLD CLSIM+VLHSG
Sbjct: 225 PMGPLALADFIGLDTCLSIMEVLHSG 250

Query: 64  82
           
Sbjct: 285 250

BLAST of WMU49126 vs. NCBI nr
Match: gi|1012080488|ref|XP_015954131.1| (PREDICTED: 3-hydroxybutyryl-CoA dehydrogenase [Arachis duranensis])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-06
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = -1

Query: 95  LMPMINEAIFALFTGVATKEDIDTGMKLG 154
           LMPMINEA FAL+TGVATKEDIDTGMKLG
Sbjct: 194 LMPMINEAFFALYTGVATKEDIDTGMKLG 222

Query: 155 182
           
Sbjct: 254 222

BLAST of WMU49126 vs. NCBI nr
Match: gi|586765202|ref|XP_006855240.1| (PREDICTED: probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 [Amborella trichopoda])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-06
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = -1

Query: 95  LMPMINEAIFALFTGVATKEDIDTGMKLG 154
           LMPMINEA FAL+TGVATKEDIDTGMKLG
Sbjct: 194 LMPMINEAFFALYTGVATKEDIDTGMKLG 222

Query: 155 182
           
Sbjct: 254 222

BLAST of WMU49126 vs. NCBI nr
Match: gi|351722947|ref|NP_001234958.1| (peroxisomal 3-hydroxyacyl-CoA dehydrogenase-like protein [Glycine max])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-06
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = -1

Query: 95  LMPMINEAIFALFTGVATKEDIDTGMKLG 154
           LMPMINEA FAL+TGVATKEDIDTGMKLG
Sbjct: 217 LMPMINEAFFALYTGVATKEDIDTGMKLG 245

Query: 155 182
           
Sbjct: 277 245

BLAST of WMU49126 vs. NCBI nr
Match: gi|1021491576|ref|XP_016188803.1| (PREDICTED: 3-hydroxybutyryl-CoA dehydrogenase [Arachis ipaensis])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-06
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = -1

Query: 95  LMPMINEAIFALFTGVATKEDIDTGMKLG 154
           LMPMINEA FAL+TGVATKEDIDTGMKLG
Sbjct: 194 LMPMINEAFFALYTGVATKEDIDTGMKLG 222

Query: 155 182
           
Sbjct: 254 222

BLAST of WMU49126 vs. NCBI nr
Match: gi|449457019|ref|XP_004146246.1| (PREDICTED: hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-06
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = -1

Query: 95  LMPMINEAIFALFTGVATKEDIDTGMKLG 154
           LMPMINEA FAL+TGVATKEDIDTGMKLG
Sbjct: 194 LMPMINEAFFALYTGVATKEDIDTGMKLG 222

Query: 155 182
           
Sbjct: 254 222

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT3G15290.11.1e-0788.46 3-hydroxyacyl-CoA dehydrogenase family protein[more]
Match NameE-valueIdentityDescription
HBD_BRADU2.6e-0688.463-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobium diazoefficiens (strain JCM ... [more]
HBD_BACSU4.5e-0688.46Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN... [more]
Match NameE-valueIdentityDescription
gi|1012080488|ref|XP_015954131.1|4.5e-0693.10PREDICTED: 3-hydroxybutyryl-CoA dehydrogenase [Arachis duranensis][more]
gi|586765202|ref|XP_006855240.1|4.5e-0693.10PREDICTED: probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 [Amborella trichopod... [more]
gi|351722947|ref|NP_001234958.1|4.5e-0693.10peroxisomal 3-hydroxyacyl-CoA dehydrogenase-like protein [Glycine max][more]
gi|1021491576|ref|XP_016188803.1|4.5e-0693.10PREDICTED: 3-hydroxybutyryl-CoA dehydrogenase [Arachis ipaensis][more]
gi|449457019|ref|XP_004146246.1|4.5e-0693.10PREDICTED: hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [Cucumis sativus][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR0133286PGD_dom2
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla004293Cla004293gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0014487S1_0014487EST


Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0133286-phosphogluconate dehydrogenase, domain 2GENE3DG3DSA:1.10.1040.10coord: 1..39
score: 4.