WMU48935 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU48935
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr1 : 30476272 .. 30476543 (+)
Sequence length	281

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGTGGTTTCTCAAATGCTTTTGCCACAACTGGGCTGTGGGACAATGTTGAAGAGATTAGAGCTATGATGAGGAAATCAGGAATGAGTAAAGATCCTGGTTATAGCAGAATTGAGATTCAAAGGGAATTCCATATCTTTGTCAAGAGCGATAAATCTCATCGACAAACTGATGAGATTTATAGAACTATTAATAGGATAACTCCAATTTTGAAAGATGCAGGGTATATTCCTCAAGTATCTGAAAACTAATGGTAGAGATTAAATTACGATTTTGAAAAGTT

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

[Close]

BLAST of WMU48935 vs. TAIR10
Match: AT3G49142.1 (AT3G49142.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-14
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 1


Query: 10  SNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRTI 69
           SN +A  G W+ V  IR +M+  G+ K+PG S +E+ R  H F+  D+SH Q+DEIYR +
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYREL 578

Query: 70  NRITPILKDAGYIP 129
           + +   +K+ GY+P
Sbjct: 579 DVLVKKMKELGYVP 592

Query: 130  189
           
Sbjct: 639  592

Query: 190  232
           
Sbjct: 699  592

[Close]

BLAST of WMU48935 vs. TAIR10
Match: AT4G16470.1 (AT4G16470.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 7.4e-14
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1


Query: 7   FSNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRT 66
           F+N +A+ GL +   ++R  M  +G+ KDPGYS+IE+Q E H F+K D SHR +++IY+ 
Sbjct: 418 FANGYASCGLREAASKVRRKMENAGVKKDPGYSQIELQGEVHRFMKDDTSHRLSEKIYKK 477

Query: 67  INRITPILKDAGYIP 126
           ++ +T    D  Y P
Sbjct: 478 VHEMTSFFMDIDYYP 492

Query: 127  186
           
Sbjct: 538  492

Query: 187  232
           
Sbjct: 598  492

[Close]

BLAST of WMU48935 vs. TAIR10
Match: AT4G33170.1 (AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.7e-13
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 1


Query: 10  SNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRTI 69
           SN +A    WD ++  R MM+   + KDPG+S IE++ + HIFV  D+S+RQT+ IYR +
Sbjct: 828 SNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKV 887

Query: 70  NRITPILKDAGYIPQ 129
             +   +K  GY+P+
Sbjct: 888 KDMIRDIKQEGYVPE 902

Query: 130  189
           
Sbjct: 948  902

Query: 190  235
           
Sbjct: 1008  902

[Close]

BLAST of WMU48935 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.7e-13
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1


Query: 10  SNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRTI 69
           SN +A+   W +V++IR  M + G+ K PG+S +E+    H F+  DKSH Q+D IY  +
Sbjct: 433 SNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKL 492

Query: 70  NRITPILKDAGYIPQVS 129
             +T  L+  GY+PQ+S
Sbjct: 493 KEMTGRLRSEGYVPQIS 509

Query: 130  189
           
Sbjct: 553  509

Query: 190  241
           
Sbjct: 613  509

[Close]

BLAST of WMU48935 vs. TAIR10
Match: AT2G03880.1 (AT2G03880.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 4.8e-13
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1


Query: 10  SNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRTI 69
           SN +A +  WD+VEEIR  MR  G+ K+PG S IE+ ++ H F+  D SH Q  E+ + +
Sbjct: 468 SNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKL 527

Query: 70  NRITPILKDAGYIPQVS 129
           N++   L   GY+P+ +
Sbjct: 528 NQLIHRLTGIGYVPETN 544

Query: 130  189
           
Sbjct: 588  544

Query: 190  241
           
Sbjct: 648  544

[Close]

BLAST of WMU48935 vs. Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-13
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 1


Query: 10  SNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRTI 69
           SN +A  G W+ V  IR +M+  G+ K+PG S +E+ R  H F+  D+SH Q+DEIYR +
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYREL 578

Query: 70  NRITPILKDAGYIP 129
           + +   +K+ GY+P
Sbjct: 579 DVLVKKMKELGYVP 592

Query: 130  189
           
Sbjct: 639  592

Query: 190  232
           
Sbjct: 699  592

[Close]

BLAST of WMU48935 vs. Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-12
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1


Query: 7   FSNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRT 66
           F+N +A+ GL +   ++R  M  +G+ KDPGYS+IE+Q E H F+K D SHR +++IY+ 
Sbjct: 418 FANGYASCGLREAASKVRRKMENAGVKKDPGYSQIELQGEVHRFMKDDTSHRLSEKIYKK 477

Query: 67  INRITPILKDAGYIP 126
           ++ +T    D  Y P
Sbjct: 478 VHEMTSFFMDIDYYP 492

Query: 127  186
           
Sbjct: 538  492

Query: 187  232
           
Sbjct: 598  492

[Close]

BLAST of WMU48935 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 6.5e-12
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1


Query: 10  SNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRTI 69
           SN +A+   W +V++IR  M + G+ K PG+S +E+    H F+  DKSH Q+D IY  +
Sbjct: 433 SNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKL 492

Query: 70  NRITPILKDAGYIPQVS 129
             +T  L+  GY+PQ+S
Sbjct: 493 KEMTGRLRSEGYVPQIS 509

Query: 130  189
           
Sbjct: 553  509

Query: 190  241
           
Sbjct: 613  509

[Close]

BLAST of WMU48935 vs. Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.5e-12
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 1


Query: 10  SNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRTI 69
           SN +A    WD ++  R MM+   + KDPG+S IE++ + HIFV  D+S+RQT+ IYR +
Sbjct: 828 SNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKV 887

Query: 70  NRITPILKDAGYIPQ 129
             +   +K  GY+P+
Sbjct: 888 KDMIRDIKQEGYVPE 902

Query: 130  189
           
Sbjct: 948  902

Query: 190  235
           
Sbjct: 1008  902

[Close]

BLAST of WMU48935 vs. Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.5e-12
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1


Query: 10  SNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRTI 69
           SN +A +  WD+VEEIR  MR  G+ K+PG S IE+ ++ H F+  D SH Q  E+ + +
Sbjct: 468 SNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKL 527

Query: 70  NRITPILKDAGYIPQVS 129
           N++   L   GY+P+ +
Sbjct: 528 NQLIHRLTGIGYVPETN 544

Query: 130  189
           
Sbjct: 588  544

Query: 190  241
           
Sbjct: 648  544

[Close]

BLAST of WMU48935 vs. NCBI nr
Match: gi|449434032|ref|XP_004134800.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g16470 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 5.1e-33
Identity = 69/79 (87.34%), Postives = 76/79 (96.20%), Query Frame = 1


Query: 7   FSNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRT 66
           FSNAFAT+GLWDNVEEIRAMM+KSGMSKDPG SRIEIQREFHIFVK DKSHR+T+EIYRT
Sbjct: 398 FSNAFATSGLWDNVEEIRAMMKKSGMSKDPGCSRIEIQREFHIFVKGDKSHRETEEIYRT 457

Query: 67  INRITPILKDAGYIPQVSE 126
           I+RITPILKDAGYIP++ E
Sbjct: 458 IDRITPILKDAGYIPELCE 476

Query: 127  186
           
Sbjct: 518  476

Query: 187  244
           
Sbjct: 578  476

[Close]

BLAST of WMU48935 vs. NCBI nr
Match: gi|659079107|ref|XP_008440079.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g16470 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-32
Identity = 67/79 (84.81%), Postives = 76/79 (96.20%), Query Frame = 1


Query: 7   FSNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRT 66
           FSNAFAT+GLWDNVEEIRAMM+KSGMSKDPG S+IEIQREFHIFVK+DKSHR+T+EIYRT
Sbjct: 398 FSNAFATSGLWDNVEEIRAMMKKSGMSKDPGCSKIEIQREFHIFVKNDKSHRETEEIYRT 457

Query: 67  INRITPILKDAGYIPQVSE 126
           I+RITPILKDAGY P++ E
Sbjct: 458 IDRITPILKDAGYTPELCE 476

Query: 127  186
           
Sbjct: 518  476

Query: 187  244
           
Sbjct: 578  476

[Close]

BLAST of WMU48935 vs. NCBI nr
Match: gi|731440563|ref|XP_010647234.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g16470-like isoform X1 [Vitis vinifera])

HSP 1 Score: 118.2 bits (295), Expect = 7.5e-24
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 10  SNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRTI 69
           SNA+AT GLWDNV E+R +MR+SGM KDPGYSRIE+QRE H F+  DKSH+QT++IY  I
Sbjct: 462 SNAYATFGLWDNVAEVRGVMRESGMRKDPGYSRIEVQREVHFFLMGDKSHKQTEQIYEVI 521

Query: 70  NRITPILKDAGYIPQVS 129
             +T ILKDAGY+P +S
Sbjct: 522 KEVTCILKDAGYVPDLS 538

Query: 130  189
           
Sbjct: 582  538

Query: 190  241
           
Sbjct: 642  538

[Close]

BLAST of WMU48935 vs. NCBI nr
Match: gi|296088921|emb|CBI38481.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-23
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 10  SNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRTI 69
           SNA+AT GLWDNV E+R +MR+SGM KDPGYSRIE+QRE H F+  DKSH+QT++IY  I
Sbjct: 402 SNAYATFGLWDNVAEVRGVMRESGMRKDPGYSRIEVQREVHFFLMGDKSHKQTEQIYEVI 461

Query: 70  NRITPILKDAGYIPQVS 129
             +T ILKDAGY+P ++
Sbjct: 462 KEVTCILKDAGYVPDLT 478

Query: 130  189
           
Sbjct: 522  478

Query: 190  241
           
Sbjct: 582  478

[Close]

BLAST of WMU48935 vs. NCBI nr
Match: gi|590626887|ref|XP_007026296.1| (Tetratricopeptide repeat-like superfamily protein [Theobroma cacao])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1


Query: 10  SNAFATTGLWDNVEEIRAMMRKSGMSKDPGYSRIEIQREFHIFVKSDKSHRQTDEIYRTI 69
           SNA+AT G WDNV  +R MMR SG+ K+P YSRIEIQ E H F++ D SH+ + EIY  I
Sbjct: 467 SNAYATFGFWDNVASLRRMMRNSGVKKEPAYSRIEIQGEVHFFLRGDISHKHSAEIYELI 526

Query: 70  NRITPILKDAGYIPQVS 129
             +T ILKDAGY+P ++
Sbjct: 527 KLMTSILKDAGYVPDIN 543

Query: 130  189
           
Sbjct: 587  543

Query: 190  241
           
Sbjct: 647  543

The following BLAST results are available for this feature:

BLAST of WMU48935 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49142.1	2.6e-14	41.89	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G16470.1	7.4e-14	41.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G33170.1	3.7e-13	41.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.1	3.7e-13	40.26	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G03880.1	4.8e-13	40.26	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of WMU48935 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP271_ARATH	4.5e-13	41.89	Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th...	[more]
PP315_ARATH	1.3e-12	41.33	Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN...	[more]
PP330_ARATH	6.5e-12	40.26	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN...	[more]
PP347_ARATH	6.5e-12	41.33	Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN...	[more]
PP147_ARATH	8.5e-12	40.26	Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidop...	[more]

BLAST of WMU48935 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434032\|ref\|XP_004134800.1\|	5.1e-33	87.34	PREDICTED: pentatricopeptide repeat-containing protein At4g16470 [Cucumis sativu...	[more]
gi\|659079107\|ref\|XP_008440079.1\|	3.3e-32	84.81	PREDICTED: pentatricopeptide repeat-containing protein At4g16470 [Cucumis melo]	[more]
gi\|731440563\|ref\|XP_010647234.1\|	7.5e-24	66.23	PREDICTED: pentatricopeptide repeat-containing protein At4g16470-like isoform X1...	[more]
gi\|296088921\|emb\|CBI38481.3\|	1.7e-23	64.94	unnamed protein product [Vitis vinifera]	[more]
gi\|590626887\|ref\|XP_007026296.1\|	1.6e-18	57.14	Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla014398	Cla014398	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0011208	S1_0011208	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 4..37 score: 4.4
None	No IPR available	PANTHER	PTHR24015:SF356	SUBFAMILY NOT NAMED	coord: 4..37 score: 4.4