WMU48548 (transcribed_cluster) Watermelon (97103) v1

NameWMU48548
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr5 : 1532470 .. 1532589 (-)
Sequence length119
The following sequences are available for this feature:

transcribed_cluster sequence

CATTGTTGCGACTCACAACAGAGTTGATTACACCGGTTCCTCTGCCATGGAAAGCAATGAAAATGAAGAAACAGACTACAAAAACTTCCAATCCATGGCTGACATTGTGACATCCAAAT
BLAST of WMU48548 vs. NCBI nr
Match: gi|700201393|gb|KGN56526.1| (hypothetical protein Csa_3G122500 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 3.7e-09
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 2

Query: 2   IVATHNRVDYTGSSAMES-NENEETDYKNFQSMADIVTSK 61
           IVATHNRVDYTGSSAMES NENEET+YKNFQSM DIV SK
Sbjct: 75  IVATHNRVDYTGSSAMESNNENEETEYKNFQSMTDIVMSK 114

Query: 62  119
           
Sbjct: 135 114

BLAST of WMU48548 vs. NCBI nr
Match: gi|449432165|ref|XP_004133870.1| (PREDICTED: transcription repressor MYB6 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 3.7e-09
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 2

Query: 2   IVATHNRVDYTGSSAMES-NENEETDYKNFQSMADIVTSK 61
           IVATHNRVDYTGSSAMES NENEET+YKNFQSM DIV SK
Sbjct: 222 IVATHNRVDYTGSSAMESNNENEETEYKNFQSMTDIVMSK 261

Query: 62  119
           
Sbjct: 282 261

BLAST of WMU48548 vs. NCBI nr
Match: gi|659077729|ref|XP_008439352.1| (PREDICTED: transcription factor MYB34-like [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-08
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 2

Query: 2   IVATHNRVDYTGSSAMESN-ENEETDYKNFQSMADIVTSK 61
           IVATH+RVDYTGSSAMESN ENEET+YKNFQSM DIV SK
Sbjct: 265 IVATHDRVDYTGSSAMESNNENEETEYKNFQSMTDIVMSK 304

Query: 62  119
           
Sbjct: 325 304

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|700201393|gb|KGN56526.1|3.7e-0990.00hypothetical protein Csa_3G122500 [Cucumis sativus][more]
gi|449432165|ref|XP_004133870.1|3.7e-0990.00PREDICTED: transcription repressor MYB6 [Cucumis sativus][more]
gi|659077729|ref|XP_008439352.1|1.4e-0887.50PREDICTED: transcription factor MYB34-like [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021243Cla021243gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0003897S1_0003897EST