WMU44595 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU44595
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr1 : 9710384 .. 9710680 (-)
Sequence length	337

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGTGCCGACGGCCTGGTCCTGATTCAGAGCGGCGCCGTTGTACGGAGAGATTGGAACGGCGTTACCGACGAGGAACGGAGACCAGATGTTGAGATCGTTGTGGCCTTGGTAGGTAGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAAACGGCGTAGACGTCGAGGCGGTCGTAGTAGATGCCGATCTTGTCGTTAGGGCTCCGGGAGGAGACGGTGACTTGGATACTGGAGGAGATAAAAGTTAGCGGCGGTGACATTGAAGATGAAGACGGTGGCGTCTTGGATGCCCCCGTAATGGCCGACCTCTGCGTTGTATACCACCTGCT

Library


Library category	ESTs
watermelon fruit 18d library	2

Homology

[Close]

BLAST of WMU44595 vs. TAIR10
Match: AT3G52470.1 (AT3G52470.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 105.1 bits (261), Expect = 2.8e-23
Identity = 46/68 (67.65%), Postives = 52/68 (76.47%), Query Frame = -1


Query: 5   PNDKIGIYYDRLDVYAVYRNQQITLRTVIQPTYQGHNDLNIWSPFLVGNAVPISPYNGAA 64
           PN KIGIYYDRL VYA Y NQQITLRT I PTYQGH ++N+WSPF+ G AVPI+PYN  A
Sbjct: 79  PNSKIGIYYDRLHVYATYMNQQITLRTAIPPTYQGHKEVNVWSPFVYGTAVPIAPYNSVA 138

Query: 65  LNQDQAVG 124
           L +++  G
Sbjct: 139 LGEEKDRG 146

Query: 125  184
           
Sbjct: 199  146

Query: 185  209
           
Sbjct: 259  146

[Close]

BLAST of WMU44595 vs. TAIR10
Match: AT3G11660.1 (AT3G11660.1 NDR1/HIN1-like 1)

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-22
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = -1


Query: 5   PNDKIGIYYDRLDVYAVYRNQQITLRTVIQPTYQGHNDLNIWSPFLVGNAVPISPYNGAA 64
           PN+KIGIYYDRLDVYA YR+QQIT  T I PTYQGH D++IWSPF+ G +VPI+P+NG +
Sbjct: 80  PNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPFNGVS 139

Query: 65  LNQDQAVG 124
           L+ D+  G
Sbjct: 140 LDTDKDNG 147

Query: 125  184
           
Sbjct: 200  147

Query: 185  209
           
Sbjct: 260  147

[Close]

BLAST of WMU44595 vs. TAIR10
Match: AT2G35960.1 (AT2G35960.1 NDR1/HIN1-like 12)

HSP 1 Score: 102.1 bits (253), Expect = 2.3e-22
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = -1


Query: 5   NDKIGIYYDRLDVYAVYRNQQITLRTVIQPTYQGHNDLNIWSPFLVGNAVPISPYNGAAL 64
           N +IGIYYDRL VYA YRNQQITLRT I PTYQGH + N+WSPF+ GN+VPI+P+N  AL
Sbjct: 82  NSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVAL 141

Query: 65  NQDQAVG 124
             +Q  G
Sbjct: 142 GDEQNRG 148

Query: 125  184
           
Sbjct: 202  148

Query: 185  206
           
Sbjct: 262  148

[Close]

BLAST of WMU44595 vs. TAIR10
Match: AT3G44220.1 (AT3G44220.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 101.3 bits (251), Expect = 4.0e-22
Identity = 44/68 (64.71%), Postives = 51/68 (75.00%), Query Frame = -1


Query: 5   PNDKIGIYYDRLDVYAVYRNQQITLRTVIQPTYQGHNDLNIWSPFLVGNAVPISPYNGAA 64
           PNDKIGI+YDRLD+YA YRNQQ+TL T++  TYQGH D+ IWSPFL G  VP++PY   A
Sbjct: 80  PNDKIGIFYDRLDIYASYRNQQVTLATLLPATYQGHLDVTIWSPFLYGTTVPVAPYFSPA 139

Query: 65  LNQDQAVG 124
           L+QD   G
Sbjct: 140 LSQDLTAG 147

Query: 125  184
           
Sbjct: 200  147

Query: 185  209
           
Sbjct: 260  147

[Close]

BLAST of WMU44595 vs. TAIR10
Match: AT5G22200.1 (AT5G22200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-21
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = -1


Query: 5   PNDKIGIYYDRLDVYAVYRNQQITLRTVIQPTYQGHNDLNIWSPFLVGNAVPISPYNGAA 64
           PNDKIGI+YDRLD+Y  YRNQ++TL  ++  TYQGH ++ +WSPFL+G+AVP++PY  +A
Sbjct: 84  PNDKIGIFYDRLDIYVTYRNQEVTLARLLPSTYQGHLEVTVWSPFLIGSAVPVAPYLSSA 143

Query: 65  LNQDQAVG 124
           LN+D   G
Sbjct: 144 LNEDLFAG 151

Query: 125  184
           
Sbjct: 204  151

Query: 185  209
           
Sbjct: 264  151

[Close]

BLAST of WMU44595 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.2e-21
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = -1


Query: 5   NDKIGIYYDRLDVYAVYRNQQITLRTVIQPTYQGHNDLNIWSPFLVGNAVPISPYNGAAL 64
           N +IGIYYDRL VYA YRNQQITLRT I PTYQGH + N+WSPF+ GN+VPI+P+N  AL
Sbjct: 82  NSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVAL 141

Query: 65  NQDQAVG 124
             +Q  G
Sbjct: 142 GDEQNRG 148

Query: 125  184
           
Sbjct: 202  148

Query: 185  206
           
Sbjct: 262  148

[Close]

BLAST of WMU44595 vs. NCBI nr
Match: gi|659125306|ref|XP_008462618.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-31
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = -1


Query: 2   PNDKIGIYYDRLDVYAVYRNQQITLRTVIQPTYQGHNDLNIWSPFLVGNAVPISPYNGAA 61
           PNDKIG+YYDRLDVYAVYRNQQITLRT IQPTYQGHNDLNIWSPFLVGN+VPISPYNGAA
Sbjct: 79  PNDKIGVYYDRLDVYAVYRNQQITLRTGIQPTYQGHNDLNIWSPFLVGNSVPISPYNGAA 138

Query: 62  LNQDQAVGT 121
           LNQDQAVGT
Sbjct: 139 LNQDQAVGT 147

Query: 122  181
           
Sbjct: 199  147

Query: 182  209
           
Sbjct: 259  147

[Close]

BLAST of WMU44595 vs. NCBI nr
Match: gi|449451173|ref|XP_004143336.1| (PREDICTED: protein YLS9 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-29
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1


Query: 2   PNDKIGIYYDRLDVYAVYRNQQITLRTVIQPTYQGHNDLNIWSPFLVGNAVPISPYNGAA 61
           PNDKIG+YYDRLDVYAVY NQQITLRT IQPTYQGHND+NIWSPFL+GN VPISPYNGA 
Sbjct: 79  PNDKIGVYYDRLDVYAVYHNQQITLRTGIQPTYQGHNDVNIWSPFLIGNNVPISPYNGAT 138

Query: 62  LNQDQAVGT 121
           LNQDQAVGT
Sbjct: 139 LNQDQAVGT 147

Query: 122  181
           
Sbjct: 199  147

Query: 182  209
           
Sbjct: 259  147

[Close]

BLAST of WMU44595 vs. NCBI nr
Match: gi|224138358|ref|XP_002322794.1| (harpin-induced family protein [Populus trichocarpa])

HSP 1 Score: 116.7 bits (291), Expect = 2.6e-23
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = -1


Query: 2   PNDKIGIYYDRLDVYAVYRNQQITLRTVIQPTYQGHNDLNIWSPFLVGNAVPISPYNGAA 61
           PNDK+GIYYD+LDVYA YRNQQITLRT I  +YQGH ++++WSPF+ G+AVP+SPYN  A
Sbjct: 80  PNDKVGIYYDKLDVYATYRNQQITLRTSIPTSYQGHKEIDVWSPFIYGSAVPVSPYNSVA 139

Query: 62  LNQDQAVGT 121
           L+QDQA GT
Sbjct: 140 LSQDQATGT 148

Query: 122  181
           
Sbjct: 200  148

Query: 182  209
           
Sbjct: 260  148

[Close]

BLAST of WMU44595 vs. NCBI nr
Match: gi|698514525|ref|XP_009802139.1| (PREDICTED: protein YLS9-like [Nicotiana sylvestris])

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-23
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = -1


Query: 2   PNDKIGIYYDRLDVYAVYRNQQITLRTVIQPTYQGHNDLNIWSPFLVGNAVPISPYNGAA 61
           PNDKIGIYYD+LDVYA YR QQITL T++ PTYQGH D++IWSPF+ GN+VP++PY G A
Sbjct: 81  PNDKIGIYYDKLDVYATYRGQQITLPTLLPPTYQGHKDVSIWSPFVYGNSVPVAPYLGNA 140

Query: 62  LNQDQAVGT 121
           L+QDQ VGT
Sbjct: 141 LSQDQMVGT 149

Query: 122  181
           
Sbjct: 201  149

Query: 182  209
           
Sbjct: 261  149

[Close]

BLAST of WMU44595 vs. NCBI nr
Match: gi|743898624|ref|XP_011042605.1| (PREDICTED: protein YLS9-like [Populus euphratica])

HSP 1 Score: 115.2 bits (287), Expect = 7.6e-23
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = -1


Query: 2   PNDKIGIYYDRLDVYAVYRNQQITLRTVIQPTYQGHNDLNIWSPFLVGNAVPISPYNGAA 61
           PNDK+GIYYD+LDVYA YRNQQITLRT I  +YQGH ++++WSPF+ G+AVP++PYN  A
Sbjct: 80  PNDKVGIYYDKLDVYATYRNQQITLRTSIPTSYQGHKEIDVWSPFVYGSAVPVAPYNSVA 139

Query: 62  LNQDQAVGT 121
           L+QDQA GT
Sbjct: 140 LSQDQATGT 148

Query: 122  181
           
Sbjct: 200  148

Query: 182  209
           
Sbjct: 260  148

The following BLAST results are available for this feature:

BLAST of WMU44595 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52470.1	2.8e-23	67.65	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G11660.1	1.4e-22	66.18	NDR1/HIN1-like 1	[more]
AT2G35960.1	2.3e-22	67.16	NDR1/HIN1-like 12	[more]
AT3G44220.1	4.0e-22	64.71	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G22200.1	1.5e-21	58.82	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of WMU44595 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NHL12_ARATH	4.2e-21	67.16	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1	[more]

BLAST of WMU44595 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125306\|ref\|XP_008462618.1\|	1.5e-31	95.65	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|449451173\|ref\|XP_004143336.1\|	1.1e-29	89.86	PREDICTED: protein YLS9 [Cucumis sativus]	[more]
gi\|224138358\|ref\|XP_002322794.1\|	2.6e-23	71.01	harpin-induced family protein [Populus trichocarpa]	[more]
gi\|698514525\|ref\|XP_009802139.1\|	5.8e-23	72.46	PREDICTED: protein YLS9-like [Nicotiana sylvestris]	[more]
gi\|743898624\|ref\|XP_011042605.1\|	7.6e-23	69.57	PREDICTED: protein YLS9-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla008398	Cla008398	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0128793	S2_0128793	EST
S2_0138180	S2_0138180	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 21..112 score: 2.2
None	No IPR available	PANTHER	PTHR31415:SF2	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATED	coord: 21..112 score: 2.2