WMU40043 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU40043
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	polyribonucleotide nucleotidyltransferase, putative
Location	Chr8 : 10734297 .. 10738075 (+)
Sequence length	805

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGGGTGAGGAACAAACGAGGGTTGTTCTCAGTAACCGTAAGGTCATGGCTGACAGCAACGCAGAGCTTGCAATTGGATCGGTGGTCACTGGAACAGTTCTAAAACTTAAAGAGTATGGTGCCTTTGTTGACATCGGTGGAATCCATGGTCTTCTTCACATCAGTGAGATAAGTCATGATCGCATACGAGATGTTGCAGCAGTTCTTAAGCCGGGAGACGTTCTCAAGGTCATGATATTGAACATTGATCGTGAAAAAGGCCATATTCGTCTTTCTACCAAGAAGCTAGAGCCTAATACCGGGGACATGATTTGCAATCCAGGGCTTGTTTTTGAAAAGGCTGAGGAAATGGCACATAGATTTAGGCAAAGATTAGCTCAAGCAGAGGCATTGGCACGTGCAGACTTGCTTAGTTTTCAGCCTGAGGGCAGATTAACTTTGAACAGTGATGGAATATTGGATCCGGCTACCCCAGAGTTGGGGGCTAAAGAATGAAGTCTCAACGAGGCTCTAAAATGCATGGTCATGCCTACACGTTAATGCACGTATTCGATGTTGCATTATCCAAAATAGTTAACAAGAAAATAACGTCAAAGACTGAAATTACATCATTTTTCTAATGTAGGTAGATATTTTGAAAATTTAGGGATAAAAATGATTTTCTTAAAGAAGTTTGGGATTATGTAGATGTTATAGAAGTTCAGGGATCAAAATATAATAATGTTGAAAGTTGAGGGATGAAATTAAAATTTATATACGCTTATGTTGATTCATCTATTTAAGTTGTAACATTGAATGGGTTTTTA

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 18d library	1
watermelon fruit 34d library	2

Homology

[Close]

BLAST of WMU40043 vs. TAIR10
Match: AT5G30510.1 (AT5G30510.1 ribosomal protein S1)

HSP 1 Score: 189.1 bits (479), Expect = 3.5e-48
Identity = 98/158 (62.03%), Postives = 112/158 (70.89%), Query Frame = 3


Query: 6   EEQTRVVLSNRKVMADSNAELAIGSVVTGTVLKLKEYGAFVDIGGIHGLLHISEISHDRI 65
           EEQT++VLSNRK +ADS A+L IGSVV G V  LK YGAF+DIGGI+GLLH+S+ISHDR+
Sbjct: 241 EEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHDRV 300

Query: 66  RDVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHXXX 125
            D+A VL+PGD LKVMIL+ DR++G + LSTKKLEP  GDMI NP LVFEKAEEMA    
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 126 XXXXXXXXXXXXXXXSFQPEGRLTLNSDGILDPATPEL 185
                           FQPE  LTL+SDGIL P   EL
Sbjct: 361 QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSEL 398

Query: 186  245
           
Sbjct: 421  398

Query: 246  305
           
Sbjct: 481  398

Query: 306  365
           
Sbjct: 541  398

Query: 366  425
           
Sbjct: 601  398

Query: 426  480
           
Sbjct: 661  398

[Close]

BLAST of WMU40043 vs. TAIR10
Match: AT3G23700.1 (AT3G23700.1 Nucleic acid-binding proteins superfamily)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 3


Query: 6   EEQTRVVLSNRKVMADSNAE-LAIGSVVTGTVLKLKEYGAFV----DIGGIH--GLLHIS 65
           EE  +++LS +  +    ++ + +G V  G V  +++YGAF+    D G  H  GL+H+S
Sbjct: 172 EENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVS 231

Query: 66  EISHDRIRDVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLE 125
           E+S D ++DV  VL+ GD ++V++ NID+EK  I LS K+LE
Sbjct: 232 EVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLE 273

Query: 126  185
           
Sbjct: 292  273

Query: 186  245
           
Sbjct: 352  273

Query: 246  291
           
Sbjct: 412  273

[Close]

BLAST of WMU40043 vs. TAIR10
Match: AT5G14580.1 (AT5G14580.1 polyribonucleotide nucleotidyltransferase, putative)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-11
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 3


Query: 63  ELAIGSVVTGTVLKLKEYGAFVDI-GGIHGLLHISEISHDRIRDVAAVLKPGDVLKVMIL 122
           EL +G V  GTV  +KEYGAFV+  GG  GLLH+SE+SH+ +  V+ VL  G  +  M +
Sbjct: 674 ELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHMSELSHEPVSKVSDVLDIGQCITTMCI 733

Query: 123 NIDREKGHIRLSTKKLEP 182
             D  +G+I+LS K L P
Sbjct: 734 ETD-VRGNIKLSRKALLP 750

Query: 183  242
           
Sbjct: 794  750

Query: 243  294
           
Sbjct: 854  750

[Close]

BLAST of WMU40043 vs. TAIR10
Match: AT3G11964.1 (AT3G11964.1 RNA binding;RNA binding)

HSP 1 Score: 58.9 bits (141), Expect = 5.4e-09
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 3


Query: 63   ELAIGSVVTGTVLKLKEYGAFVDIG--GIHGLLHISEISHDRIRDVAAVLKPGDVLKVMI 122
            +L +G +++G + +++ +G F+DI   G+ GL HIS++S DR+ +V A  K G+ ++  I
Sbjct: 1431 KLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKI 1490

Query: 123  LNIDREKGHIRLSTKKLEPNTGD 182
            L +D EK  I L  K      GD
Sbjct: 1491 LKLDEEKKRISLGMKSSYLMNGD 1513

Query: 183   242
            
Sbjct: 1551  1513

Query: 243   302
            
Sbjct: 1611  1513

Query: 303   306
            
Sbjct: 1671  1513

[Close]

BLAST of WMU40043 vs. TAIR10
Match: AT1G71720.1 (AT1G71720.1 Nucleic acid-binding proteins superfamily)

HSP 1 Score: 56.2 bits (134), Expect = 3.5e-08
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 3


Query: 6   EEQTRVVLSNRKVMADSNAELAIGSVVTGTVLKLKEYGAFVDIG--GIHGLLHISEISHD 65
           E++  ++LS +  +A     L  G+++ GTV+K+  YGA V +G     GLLHIS I+  
Sbjct: 341 EDKNDLILSEK--VAWEKLYLREGTLLEGTVVKILPYGAQVKLGDSSRSGLLHISNITRR 400

Query: 66  RIRDVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMA 125
           RI  V+ VL+  + +KV+++        I LS   LE   G  I +   VF +AEEMA
Sbjct: 401 RIGSVSDVLQVDESVKVLVVK-SLFPDKISLSIADLESEPGLFISDREKVFTEAEEMA 455

Query: 126  185
           
Sbjct: 461  455

Query: 186  245
           
Sbjct: 521  455

Query: 246  305
           
Sbjct: 581  455

Query: 306  354
           
Sbjct: 641  455

[Close]

BLAST of WMU40043 vs. Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.7e-49
Identity = 102/161 (63.35%), Postives = 117/161 (72.67%), Query Frame = 3


Query: 6   EEQTRVVLSNRKVMADSNAELAIGSVVTGTVLKLKEYGAFVDIGGIHGLLHISEISHDRI 65
           EEQ+R+V+SNRK MADS A+L IGSVVTGTV  LK YGAF+DIGGI+GLLH+S+ISHDR+
Sbjct: 238 EEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 297

Query: 66  RDVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHXXX 125
            D+A VL+PGD LKVMIL+ DRE+G + LSTKKLEP  GDMI NP LVFEKAEEMA    
Sbjct: 298 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 357

Query: 126 XXXXXXXXXXXXXXXSFQPEGRLTLNSDGILDPATPELGAK 185
                           FQPE  LTL+SDGIL P T +L A+
Sbjct: 358 QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAE 398

Query: 186  245
           
Sbjct: 418  398

Query: 246  305
           
Sbjct: 478  398

Query: 306  365
           
Sbjct: 538  398

Query: 366  425
           
Sbjct: 598  398

Query: 426  485
           
Sbjct: 658  398

Query: 486  489
           
Sbjct: 718  398

[Close]

BLAST of WMU40043 vs. Swiss-Prot
Match: RPS1_ARATH (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana GN=RPS1 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.2e-47
Identity = 98/158 (62.03%), Postives = 112/158 (70.89%), Query Frame = 3


Query: 6   EEQTRVVLSNRKVMADSNAELAIGSVVTGTVLKLKEYGAFVDIGGIHGLLHISEISHDRI 65
           EEQT++VLSNRK +ADS A+L IGSVV G V  LK YGAF+DIGGI+GLLH+S+ISHDR+
Sbjct: 241 EEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHDRV 300

Query: 66  RDVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHXXX 125
            D+A VL+PGD LKVMIL+ DR++G + LSTKKLEP  GDMI NP LVFEKAEEMA    
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 126 XXXXXXXXXXXXXXXSFQPEGRLTLNSDGILDPATPEL 185
                           FQPE  LTL+SDGIL P   EL
Sbjct: 361 QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSEL 398

Query: 186  245
           
Sbjct: 421  398

Query: 246  305
           
Sbjct: 481  398

Query: 306  365
           
Sbjct: 541  398

Query: 366  425
           
Sbjct: 601  398

Query: 426  480
           
Sbjct: 661  398

[Close]

BLAST of WMU40043 vs. Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4)

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-28
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 3


Query: 6   EEQTRVVLSNRKVMADSNAE-LAIGSVVTGTVLKLKEYGAFVDIGGIHGLLHISEISHDR 65
           E++ R+VLS+R+ + +     L +G VV G V  +K YGAF+DIGG+ GLLHISEISHD 
Sbjct: 173 EDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDH 232

Query: 66  IRDVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMA 125
           I    +V    D +KVMI+++D E+G I LSTK+LEP  GDM+ NP +V+EKAEEMA
Sbjct: 233 IETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMA 289

Query: 126  185
           
Sbjct: 293  289

Query: 186  245
           
Sbjct: 353  289

Query: 246  305
           
Sbjct: 413  289

Query: 306  354
           
Sbjct: 473  289

HSP 2 Score: 47.8 bits (112), Expect = 2.2e-04
Identity = 25/73 (34.25%), Postives = 40/73 (54.79%), Query Frame = 3


Query: 75  GSVVTGTVLKLKEYGAFVDIGG-IHGLLHISEISHDRIRDVAAVLKPGDVLKVMILNIDR 134
           G  V GTV  L+  GA +DIG      L + E+S +R+     VL+P ++ +  IL+ + 
Sbjct: 32  GDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEEVLQPSEMREFFILSDEN 91

Query: 135 EKGHIRLSTKKLE 194
           E G + LS +++E
Sbjct: 92  EDGQLTLSIRRIE 104

Query: 195  254
           
Sbjct: 152  104

Query: 255  291
           
Sbjct: 212  104

[Close]

BLAST of WMU40043 vs. Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rps1A PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.3e-24
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 3


Query: 6   EEQTRVVLSNRKVMADSNAE-LAIGSVVTGTVLKLKEYGAFVDIGGIHGLLHISEISHDR 65
           EE+ R+VLS+R+ + +     L +  VV G+V  +K YGAF+DIGG+ GLLHISEISHD 
Sbjct: 172 EERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDH 231

Query: 66  IRDVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMA 125
           I    +V    D +KVMI+++D E+G I LSTK+LEP  G M+ +  LV E A+EMA
Sbjct: 232 IDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMA 288

Query: 126  185
           
Sbjct: 292  288

Query: 186  245
           
Sbjct: 352  288

Query: 246  305
           
Sbjct: 412  288

Query: 306  354
           
Sbjct: 472  288

[Close]

BLAST of WMU40043 vs. Swiss-Prot
Match: RS1_LEULA (30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-17
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 3


Query: 18  RVVLSNRKVMADSNA--------ELAIGSVVTGTVLKLKEYGAFVDIGGIHGLLHISEIS 77
           R++LS + V A   A        +L++G VV GTV +L ++GAFVD+GG+ GL+H+SEIS
Sbjct: 204 RLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEIS 263

Query: 78  HDRIRDVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLEPNTGD 137
           HDR+++ A VL  GD + V IL +D EKG I LS K  +    D
Sbjct: 264 HDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWD 307

Query: 138  197
           
Sbjct: 324  307

Query: 198  257
           
Sbjct: 384  307

Query: 258  306
           
Sbjct: 444  307

HSP 2 Score: 70.5 bits (171), Expect = 3.2e-11
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 3


Query: 63  ELAIGSVVTGTVLKLKEYGAFVDI-GGIHGLLHISEISHDRIRDVAAVLKPGDVLKVMIL 122
           ++A GSV+ GTV ++K++GAFV+I  GI GL+H+S+IS+ RI + + VLK GD ++V +L
Sbjct: 312 QIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVL 371

Query: 123 NIDREKGHIRLSTKKLE--PNTGDMICNPG 182
           +I   +  I LS K LE  P   D   N G
Sbjct: 372 DIKPAEERISLSMKALEEKPEREDRRGNDG 401

Query: 183  242
           
Sbjct: 432  401

Query: 243  302
           
Sbjct: 492  401

Query: 303  324
           
Sbjct: 552  401

[Close]

BLAST of WMU40043 vs. NCBI nr
Match: gi|659076992|ref|XP_008438974.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo])

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-49
Identity = 106/167 (63.47%), Postives = 121/167 (72.46%), Query Frame = 3


Query: 6   EEQTRVVLSNRKVMADSNAELAIGSVVTGTVLKLKEYGAFVDIGGIHGLLHISEISHDRI 65
           EEQ+R+VLSNRK MADS A+L IGSVVTGTV  LK YGAF+DIGGI+GLLH+S+ISHDRI
Sbjct: 241 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 300

Query: 66  RDVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHXXX 125
            D+A VL+PGD LKVMIL+ DRE+G + LSTKKLEP  GDMI NP LVFEKAEEMA    
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 126 XXXXXXXXXXXXXXXSFQPEGRLTLNSDGILDPATPELGAKE*SLNE 185
                           FQPE  LTL +DGIL P TPEL  +   LN+
Sbjct: 361 QRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLND 407

Query: 186  245
           
Sbjct: 421  407

Query: 246  305
           
Sbjct: 481  407

Query: 306  365
           
Sbjct: 541  407

Query: 366  425
           
Sbjct: 601  407

Query: 426  485
           
Sbjct: 661  407

Query: 486  507
           
Sbjct: 721  407

[Close]

BLAST of WMU40043 vs. NCBI nr
Match: gi|449459770|ref|XP_004147619.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 3.0e-49
Identity = 106/167 (63.47%), Postives = 121/167 (72.46%), Query Frame = 3


Query: 6   EEQTRVVLSNRKVMADSNAELAIGSVVTGTVLKLKEYGAFVDIGGIHGLLHISEISHDRI 65
           EEQ+R+VLSNRK MADS A+L IGSVVTGTV  LK YGAF+DIGGI+GLLH+S+ISHDRI
Sbjct: 241 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 300

Query: 66  RDVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHXXX 125
            D+A VL+PGD LKVMIL+ DRE+G + LSTKKLEP  GDMI NP LVFEKAEEMA    
Sbjct: 301 SDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 126 XXXXXXXXXXXXXXXSFQPEGRLTLNSDGILDPATPELGAKE*SLNE 185
                           FQPE  LTL +DGIL P TPEL  +   LN+
Sbjct: 361 QRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLND 407

Query: 186  245
           
Sbjct: 421  407

Query: 246  305
           
Sbjct: 481  407

Query: 306  365
           
Sbjct: 541  407

Query: 366  425
           
Sbjct: 601  407

Query: 426  485
           
Sbjct: 661  407

Query: 486  507
           
Sbjct: 721  407

[Close]

BLAST of WMU40043 vs. NCBI nr
Match: gi|225432062|ref|XP_002280604.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera])

HSP 1 Score: 203.4 bits (516), Expect = 5.1e-49
Identity = 104/167 (62.28%), Postives = 123/167 (73.65%), Query Frame = 3


Query: 6   EEQTRVVLSNRKVMADSNAELAIGSVVTGTVLKLKEYGAFVDIGGIHGLLHISEISHDRI 65
           EEQ+R+VLSNRK MADS A+L IGSVVTGTV  LK YGAF+DIGGI+GLLH+S+ISHDR+
Sbjct: 237 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 296

Query: 66  RDVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHXXX 125
            D+A VL+PGD+LKVMIL+ DRE+G + LSTKKLEP  GDMI NP LVFEKAEEMA    
Sbjct: 297 SDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 356

Query: 126 XXXXXXXXXXXXXXXSFQPEGRLTLNSDGILDPATPELGAKE*SLNE 185
                           FQPE  LTLNSDGIL P + +L A+   L++
Sbjct: 357 QRIAQAEAMARADMLRFQPESGLTLNSDGILGPVSADLPAEGLDLSD 403

Query: 186  245
           
Sbjct: 417  403

Query: 246  305
           
Sbjct: 477  403

Query: 306  365
           
Sbjct: 537  403

Query: 366  425
           
Sbjct: 597  403

Query: 426  485
           
Sbjct: 657  403

Query: 486  507
           
Sbjct: 717  403

[Close]

BLAST of WMU40043 vs. NCBI nr
Match: gi|700202052|gb|KGN57185.1| (hypothetical protein Csa_3G168960 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 8.6e-49
Identity = 105/166 (63.25%), Postives = 120/166 (72.29%), Query Frame = 3


Query: 9   EQTRVVLSNRKVMADSNAELAIGSVVTGTVLKLKEYGAFVDIGGIHGLLHISEISHDRIR 68
           EQ+R+VLSNRK MADS A+L IGSVVTGTV  LK YGAF+DIGGI+GLLH+S+ISHDRI 
Sbjct: 238 EQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRIS 297

Query: 69  DVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHXXXX 128
           D+A VL+PGD LKVMIL+ DRE+G + LSTKKLEP  GDMI NP LVFEKAEEMA     
Sbjct: 298 DIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ 357

Query: 129 XXXXXXXXXXXXXXSFQPEGRLTLNSDGILDPATPELGAKE*SLNE 188
                          FQPE  LTL +DGIL P TPEL  +   LN+
Sbjct: 358 RIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLND 403

Query: 189  248
           
Sbjct: 418  403

Query: 249  308
           
Sbjct: 478  403

Query: 309  368
           
Sbjct: 538  403

Query: 369  428
           
Sbjct: 598  403

Query: 429  488
           
Sbjct: 658  403

Query: 489  507
           
Sbjct: 718  403

[Close]

BLAST of WMU40043 vs. NCBI nr
Match: gi|567852275|ref|XP_006419301.1| (hypothetical protein CICLE_v10005364mg [Citrus clementina])

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 103/160 (64.38%), Postives = 118/160 (73.75%), Query Frame = 3


Query: 6   EEQTRVVLSNRKVMADSNAELAIGSVVTGTVLKLKEYGAFVDIGGIHGLLHISEISHDRI 65
           EEQ+R+VLSNRK MADS A+L IGSVV GTV  LK YGAF+DIGGI+GLLH+S+ISHDR+
Sbjct: 167 EEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 226

Query: 66  RDVAAVLKPGDVLKVMILNIDREKGHIRLSTKKLEPNTGDMICNPGLVFEKAEEMAHXXX 125
            D+A VL+PGD LKVMIL+ DRE+G + LSTKKLEP  GDMI NP LVFEKAEEMA    
Sbjct: 227 ADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 286

Query: 126 XXXXXXXXXXXXXXXSFQPEGRLTLNSDGILDPATPELGA 185
                           FQPE  LTLNSDGIL P +P+L A
Sbjct: 287 QRIAQAEAMARADMLRFQPESGLTLNSDGILGPLSPDLPA 326

Query: 186  245
           
Sbjct: 347  326

Query: 246  305
           
Sbjct: 407  326

Query: 306  365
           
Sbjct: 467  326

Query: 366  425
           
Sbjct: 527  326

Query: 426  485
           
Sbjct: 587  326

The following BLAST results are available for this feature:

BLAST of WMU40043 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G30510.1	3.5e-48	62.03	ribosomal protein S1	[more]
AT3G23700.1	1.1e-12	39.22	Nucleic acid-binding proteins superfamily	[more]
AT5G14580.1	2.0e-11	47.44	polyribonucleotide nucleotidyltransferase, putative	[more]
AT3G11964.1	5.4e-09	36.14	RNA binding;RNA binding	[more]
AT1G71720.1	3.5e-08	36.44	Nucleic acid-binding proteins superfamily	[more]

BLAST of WMU40043 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR1_SPIOL	1.7e-49	63.35	30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1	[more]
RPS1_ARATH	6.2e-47	62.03	30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana GN=RPS1 PE=1 SV=...	[more]
RS1_SYNP6	3.8e-28	53.85	30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA...	[more]
RS1A_SYNY3	7.3e-24	50.43	30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus...	[more]
RS1_LEULA	3.0e-17	46.15	30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2	[more]

BLAST of WMU40043 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076992\|ref\|XP_008438974.1\|	1.7e-49	63.47	PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo]	[more]
gi\|449459770\|ref\|XP_004147619.1\|	3.0e-49	63.47	PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis sativus]	[more]
gi\|225432062\|ref\|XP_002280604.1\|	5.1e-49	62.28	PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera]	[more]
gi\|700202052\|gb\|KGN57185.1\|	8.6e-49	63.25	hypothetical protein Csa_3G168960 [Cucumis sativus]	[more]
gi\|567852275\|ref\|XP_006419301.1\|	1.9e-48	64.38	hypothetical protein CICLE_v10005364mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003029	S1_domain
IPR012340	NA-bd_OB-fold
IPR022967	S1_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla003778	Cla003778	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0000170	S1_0000170	EST
S2_0053927	S2_0053927	EST
S4_0039217	S4_0039217	EST
S4_0060082	S4_0060082	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 23..94 score: 4.5
IPR003029	S1 domain	PROFILE	PS50126	S1	coord: 26..94 score: 22
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 21..96 score: 1.7
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 19..100 score: 1.27
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 24..94 score: 3.3
None	No IPR available	unknown	Coil	Coil	coord: 111..131 scor
None	No IPR available	PANTHER	PTHR10724	S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1	coord: 3..180 score: 9.9
None	No IPR available	PANTHER	PTHR10724:SF7	RIBOSOMAL PROTEIN S1-RELATED	coord: 3..180 score: 9.9