WMU37372 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU37372
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein FAM32A-like protein
Location	Chr7 : 31432601 .. 31440610 (-)
Sequence length	577

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGTTACGGAAAATAGCCATCTCTATGAGTATGAGTGCAGCAAGTAACAGGTCGGATTGGTTCGGAAAGAAAATTCTCTCCTCACCCTCCACCCGTAGCAGCGAGGAAGAACAAAATCATTTTTATTATCCATGAAAGGAAAGTAGTTGAAGCAAATTGGAATCTGCATCGTTGCAATAGTTGAATCTCGTCCTCAGAAGTGCTGAAATTTTCTTAGGGCCTCAGGCAATGTCTTCCTACGATAATGTTGTTGGTGGGAAGTTGAAGCTTAAAGGGAAAGCTCTTGATGTGAAAGTAGGTGGGGTGAAGAAAAAAAGAAACCTAAAAAGAATCAAGATCAAAATATCTCTAGAGCTGGAGAATGAGCATCCGGCAGGTGGAAGTGCTGCCAGTGGTGAAATGGCAAGTGATGCGAATGAGGAAGAAATAGATGAAGCCAACAAGTCAACTGAGGATGGGAAGGTTCCTCACTATGATGATCATCTAACACCAGCGGAAAAACGTTATATTGAACAGAAGGAGAGAATTGATGTTCATAAGAACTAGGACCAAGAAAGCTAATAAATCTCATCGTGACC

Library


Library category	ESTs
watermelon fruit 10d library	3
watermelon fruit 18d library	2
watermelon fruit 26d library	1
watermelon fruit 34d library	1

Homology

[Close]

BLAST of WMU37372 vs. TAIR10
Match: AT1G16810.1 (AT1G16810.1 unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.8e-07
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 3


Query: 417 EEEIDEANKSTEDGKVPHY---DDHLTPAEKRYIEQKERIDVHK 476
           +EE++ + K++ED K+      DDHLTPAE+RYIEQK+R+DV K
Sbjct: 66  DEEMNRSEKASEDAKLQQQLDDDDHLTPAERRYIEQKQRLDVQK 109

Query: 477  536
           
Sbjct: 126  109

Query: 537  540
           
Sbjct: 186  109

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BLAST of WMU37372 vs. TrEMBL
Match: A0A0A0LE92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G640580 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 3


Query: 414 NEEEIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKERIDVHK 473
           NEEEIDEANKSTE+GKVPHYDDHLTPAE+RYIEQKERIDVH+
Sbjct: 28  NEEEIDEANKSTEEGKVPHYDDHLTPAERRYIEQKERIDVHR 69

Query: 474  533
           
Sbjct: 88   69

Query: 534  540
           
Sbjct: 148  69

[Close]

BLAST of WMU37372 vs. TrEMBL
Match: M5XB95_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013180mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.1e-11
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 3


Query: 414 NEEEIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKERIDVHK 473
           +EEEI++ANKS E+GK PHYDDHLTPAE+RYIEQ+ERID H+
Sbjct: 60  DEEEINDANKSGEEGKAPHYDDHLTPAERRYIEQRERIDTHR 101

Query: 474  533
           
Sbjct: 120  101

Query: 534  540
           
Sbjct: 180  101

[Close]

BLAST of WMU37372 vs. TrEMBL
Match: A0A061G9R4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027792 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.3e-09
Identity = 28/41 (68.29%), Postives = 38/41 (92.68%), Query Frame = 3


Query: 417 EEEIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKERIDVHK 476
           EE+I++A+KS+ +GK PHYDDHLTPAE+RYIEQ+E +DVH+
Sbjct: 61  EEDINDADKSSGEGKAPHYDDHLTPAERRYIEQREELDVHR 101

Query: 477  536
           
Sbjct: 121  101

Query: 537  540
           
Sbjct: 181  101

[Close]

BLAST of WMU37372 vs. TrEMBL
Match: A0A0B0PTN0_GOSAR (Protein FAM32A-like protein OS=Gossypium arboreum GN=F383_11884 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-08
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 3


Query: 414 NEEEIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKERIDVHK 473
           NEE+I+ A KS+ +   PHYDDHLTPAE+RYIEQ+E++DVH+
Sbjct: 64  NEEDINNAEKSSGEKAAPHYDDHLTPAERRYIEQREQLDVHR 105

Query: 474  533
           
Sbjct: 124  105

Query: 534  540
           
Sbjct: 184  105

[Close]

BLAST of WMU37372 vs. TrEMBL
Match: A0A0D2TI94_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G119200 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-08
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 3


Query: 414 NEEEIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKERIDVHK 473
           NEE+I+ A KS+ +   PHYDDHLTPAE+RYIEQ+E++DVH+
Sbjct: 133 NEEDINNAEKSSGEKAAPHYDDHLTPAERRYIEQREQLDVHR 174

Query: 474  533
           
Sbjct: 193  174

Query: 534  540
           
Sbjct: 253  174

[Close]

BLAST of WMU37372 vs. NCBI nr
Match: gi|449453340|ref|XP_004144416.1| (PREDICTED: protein FAM32A [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 6.2e-17
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 3


Query: 345 SLELENEHPXXXXXXXXXXXXXXNEEEIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKER 404
           S ELENEHP              NEEEIDEANKSTE+GKVPHYDDHLTPAE+RYIEQKER
Sbjct: 40  SRELENEHPAGGSAASGEEPSDANEEEIDEANKSTEEGKVPHYDDHLTPAERRYIEQKER 99

Query: 405 IDVHK 464
           IDVH+
Sbjct: 100 IDVHR 104

Query: 465  524
           
Sbjct: 160  104

Query: 525  540
           
Sbjct: 220  104

[Close]

BLAST of WMU37372 vs. NCBI nr
Match: gi|659130305|ref|XP_008465099.1| (PREDICTED: protein FAM32A [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 2.4e-16
Identity = 46/65 (70.77%), Postives = 50/65 (76.92%), Query Frame = 3


Query: 345 SLELENEHPXXXXXXXXXXXXXXNEEEIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKER 404
           S ELENEHP              NEEEI+EANKSTE+GKVPHYDDHLTPAE+RYIEQKER
Sbjct: 40  SRELENEHPAGGSAASGEEPSDANEEEINEANKSTEEGKVPHYDDHLTPAERRYIEQKER 99

Query: 405 IDVHK 464
           IDVH+
Sbjct: 100 IDVHR 104

Query: 465  524
           
Sbjct: 160  104

Query: 525  540
           
Sbjct: 220  104

[Close]

BLAST of WMU37372 vs. NCBI nr
Match: gi|700203283|gb|KGN58416.1| (hypothetical protein Csa_3G640580 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 3


Query: 414 NEEEIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKERIDVHK 473
           NEEEIDEANKSTE+GKVPHYDDHLTPAE+RYIEQKERIDVH+
Sbjct: 28  NEEEIDEANKSTEEGKVPHYDDHLTPAERRYIEQKERIDVHR 69

Query: 474  533
           
Sbjct: 88   69

Query: 534  540
           
Sbjct: 148  69

[Close]

BLAST of WMU37372 vs. NCBI nr
Match: gi|645243455|ref|XP_008227982.1| (PREDICTED: protein FAM32A-like [Prunus mume])

HSP 1 Score: 73.6 bits (179), Expect = 4.3e-10
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 3


Query: 414 NEEEIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKERIDVHK 473
           +EEEI++ANKS E+GK PHYDDHLTPAE+RYIEQ+ERID H+
Sbjct: 60  DEEEINDANKSGEEGKAPHYDDHLTPAERRYIEQRERIDTHR 101

Query: 474  533
           
Sbjct: 120  101

Query: 534  540
           
Sbjct: 180  101

[Close]

BLAST of WMU37372 vs. NCBI nr
Match: gi|595928676|ref|XP_007215136.1| (hypothetical protein PRUPE_ppa013180mg [Prunus persica])

HSP 1 Score: 73.6 bits (179), Expect = 4.3e-10
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 3


Query: 414 NEEEIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKERIDVHK 473
           +EEEI++ANKS E+GK PHYDDHLTPAE+RYIEQ+ERID H+
Sbjct: 60  DEEEINDANKSGEEGKAPHYDDHLTPAERRYIEQRERIDTHR 101

Query: 474  533
           
Sbjct: 120  101

Query: 534  540
           
Sbjct: 180  101

The following BLAST results are available for this feature:

BLAST of WMU37372 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16810.1	2.8e-07	54.55	unknown protein	[more]

BLAST of WMU37372 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE92_CUCSA	1.5e-14	92.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G640580 PE=4 SV=1	[more]
M5XB95_PRUPE	6.1e-11	76.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013180mg PE=4 SV=1	[more]
A0A061G9R4_THECC	4.3e-09	68.29	Uncharacterized protein OS=Theobroma cacao GN=TCM_027792 PE=4 SV=1	[more]
A0A0B0PTN0_GOSAR	6.3e-08	64.29	Protein FAM32A-like protein OS=Gossypium arboreum GN=F383_11884 PE=4 SV=1	[more]
A0A0D2TI94_GOSRA	6.3e-08	64.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G119200 PE=4 SV=1	[more]

BLAST of WMU37372 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453340\|ref\|XP_004144416.1\|	6.2e-17	72.31	PREDICTED: protein FAM32A [Cucumis sativus]	[more]
gi\|659130305\|ref\|XP_008465099.1\|	2.4e-16	70.77	PREDICTED: protein FAM32A [Cucumis melo]	[more]
gi\|700203283\|gb\|KGN58416.1\|	1.1e-13	92.86	hypothetical protein Csa_3G640580 [Cucumis sativus]	[more]
gi\|645243455\|ref\|XP_008227982.1\|	4.3e-10	76.19	PREDICTED: protein FAM32A-like [Prunus mume]	[more]
gi\|595928676\|ref\|XP_007215136.1\|	4.3e-10	76.19	hypothetical protein PRUPE_ppa013180mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR013865	DUF1754_euk

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla010948	Cla010948	gene
Cla010947	Cla010947	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0003538	S1_0003538	EST
S1_0049450	S1_0049450	EST
S1_0063548	S1_0063548	EST
S2_0162564	S2_0162564	EST
S2_0172784	S2_0172784	EST
S3_0067497	S3_0067497	EST
S4_0135056	S4_0135056	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013865	Protein of unknown function DUF1754, eukaryotic	PANTHER	PTHR13282	UNCHARACTERIZED	coord: 1..104 score: 4.8
IPR013865	Protein of unknown function DUF1754, eukaryotic	PFAM	PF08555	DUF1754	coord: 4..100 score: 7.1
None	No IPR available	PANTHER	PTHR13282:SF6	PROTEIN FAM32A	coord: 1..104 score: 4.8