Cla010948 (gene) Watermelon (97103) v1

Overview
NameCla010948
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 31437588 .. 31438220 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATAAGGTGTTAATAAAACTTGATGATAGTTTTGCGAAAATGGACTTCGATGGAAAATGGCGAGAAATTGGATCCTTGCATTTGAAGATTGAAAATTGGTCTTACAAAGCACATTCTCATCCAAAGTTCATTGTGAGTTATGATGGTTGGCTTTCGTTAAAAAATTTACCTTTTCCTTTTTGGACTCGCCCTACCTTTGAAGCCATCGAAGAAAATAATGAGGGTTTGGTTAGTATTTCTCCTCAAACTTTGAATTTCTTGGATTATTCTGGAGCTCGCATTGAAGTTAAAAGAAATTTGTGTGATTTGCTCCCCGCTGAAATTGAAATTAAAGATAAGACTAATGGTAATTTTCACCTTAGATTTGGTGATATTTATCCATTAGATACTCCAAGTATCCTCCAAGGCGAGTTATTTTTCAACGATTTTTCTTTAGCACAAGATGATTTTGCTAAGGAGACTCTAATGGTTTATTTTGCAGAGGGTATTGATAATTTGTTTGAGAATGGTGAAAATGATCAAGCAAAATTGTCTCCCATTATCCCTGCCAAGTTCTCCACTTTGATTGAACAATGTGGTTTTCAGATGGAAGTGATTCCTCCTCAATATCCTTCAATTAAAGCATAG

mRNA sequence

ATGGCTGATAAGGTGTTAATAAAACTTGATGATAGTTTTGCGAAAATGGACTTCGATGGAAAATGGCGAGAAATTGGATCCTTGCATTTGAAGATTGAAAATTGGTCTTACAAAGCACATTCTCATCCAAAGTTCATTGTGAGTTATGATGGTTGGCTTTCGTTAAAAAATTTACCTTTTCCTTTTTGGACTCGCCCTACCTTTGAAGCCATCGAAGAAAATAATGAGGGTTTGGTTAGTATTTCTCCTCAAACTTTGAATTTCTTGGATTATTCTGGAGCTCGCATTGAAGTTAAAAGAAATTTGTGTGATTTGCTCCCCGCTGAAATTGAAATTAAAGATAAGACTAATGGTAATTTTCACCTTAGATTTGGTGATATTTATCCATTAGATACTCCAAGTATCCTCCAAGGCGAGTTATTTTTCAACGATTTTTCTTTAGCACAAGATGATTTTGCTAAGGAGACTCTAATGGTTTATTTTGCAGAGGGTATTGATAATTTGTTTGAGAATGGTGAAAATGATCAAGCAAAATTGTCTCCCATTATCCCTGCCAAGTTCTCCACTTTGATTGAACAATGTGGTTTTCAGATGGAAGTGATTCCTCCTCAATATCCTTCAATTAAAGCATAG

Coding sequence (CDS)

ATGGCTGATAAGGTGTTAATAAAACTTGATGATAGTTTTGCGAAAATGGACTTCGATGGAAAATGGCGAGAAATTGGATCCTTGCATTTGAAGATTGAAAATTGGTCTTACAAAGCACATTCTCATCCAAAGTTCATTGTGAGTTATGATGGTTGGCTTTCGTTAAAAAATTTACCTTTTCCTTTTTGGACTCGCCCTACCTTTGAAGCCATCGAAGAAAATAATGAGGGTTTGGTTAGTATTTCTCCTCAAACTTTGAATTTCTTGGATTATTCTGGAGCTCGCATTGAAGTTAAAAGAAATTTGTGTGATTTGCTCCCCGCTGAAATTGAAATTAAAGATAAGACTAATGGTAATTTTCACCTTAGATTTGGTGATATTTATCCATTAGATACTCCAAGTATCCTCCAAGGCGAGTTATTTTTCAACGATTTTTCTTTAGCACAAGATGATTTTGCTAAGGAGACTCTAATGGTTTATTTTGCAGAGGGTATTGATAATTTGTTTGAGAATGGTGAAAATGATCAAGCAAAATTGTCTCCCATTATCCCTGCCAAGTTCTCCACTTTGATTGAACAATGTGGTTTTCAGATGGAAGTGATTCCTCCTCAATATCCTTCAATTAAAGCATAG

Protein sequence

MADKVLIKLDDSFAKMDFDGKWREIGSLHLKIENWSYKAHSHPKFIVSYDGWLSLKNLPFPFWTRPTFEAIEENNEGLVSISPQTLNFLDYSGARIEVKRNLCDLLPAEIEIKDKTNGNFHLRFGDIYPLDTPSILQGELFFNDFSLAQDDFAKETLMVYFAEGIDNLFENGENDQAKLSPIIPAKFSTLIEQCGFQMEVIPPQYPSIKA
Homology
[Close]
BLAST of Cla010948 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-09
Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = 1 

Query: 22  WREIGSLHLKIENWSYKAHSHPKFIVSYDGWLSLKNLPFPFWTRPTFEAIEENNEGLVSI 81
           W  +G  ++K E W+ K H+ PKF+ SY GW+ ++ +P   W   +F  I +   G + +
Sbjct: 187 WTTVGRFYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEV 246

Query: 82  SPQTLNFLDYSGARIEVKRNLCDLLPAEIEIKDKTNGNF 121
           + +T    D   A I VK N    +PA I++ DK   ++
Sbjct: 247 AKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSY 285

[Close]
BLAST of Cla010948 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 70.9 bits (172), Expect = 3.1e-09
Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = 1 

Query: 22  WREIGSLHLKIENWSYKAHSHPKFIVSYDGWLSLKNLPFPFWTRPTFEAIEENNEGLVSI 81
           W  +G  ++K E W+ K H+ PKF+ SY GW+ ++ +P   W   +F  I +   G + +
Sbjct: 187 WTTVGRFYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEV 246

Query: 82  SPQTLNFLDYSGARIEVKRNLCDLLPAEIEIKDKTNGNF 121
           + +T    D   A I VK N    +PA I++ DK   ++
Sbjct: 247 AKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSY 285

The following BLAST results are available for this feature:
BLAST of Cla010948 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GB30_CUCME2.1e-0931.31Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla010948 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135793|gb|ADN33672.1|3.1e-0931.31hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU18345watermelon EST collection version 2.0transcribed_cluster
WMU37372watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010948Cla010948.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU37372WMU37372transcribed_cluster
WMU18345WMU18345transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla010948Watermelon (97103) v2wmwmbB174
Cla010948Wax gourdwgowmB191
Cla010948Cucurbita maxima (Rimu)cmawmB234
Cla010948Cucurbita moschata (Rifu)cmowmB220
Cla010948Watermelon (Charleston Gray)wcgwmB372
Cla010948Cucurbita pepo (Zucchini)cpewmB602
Cla010948Bottle gourd (USVL1VR-Ls)lsiwmB444