WMU33345 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU33345
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr10 : 1343338 .. 1346671 (+)
Sequence length514
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ATGGTAGCACTGAGAGAGCCGCCAGCGGAATTAATGAAGAGTCTAATATCCTTAGTAGAGTCCTGAGCATCCAAGAGCAAGAGCTGACTCATAATAGCATCGGCCACAAAGTCATCAATGCTGTTCCCCAAGAAGACGATCCTCTCCCTCGAAAAGCAGGCCCATGGCGTCAGTCTCGGCGCCTCTCCGGGCGGCATCCGGGCGTCTGTGGACCCCGTCATAAGGACGGAGCACGGCGGAGCGTAGGGTTCTGGGAGGGTTTAAGAGCGGTTGTTTTGAGGACTGATGAAGCCGAAGAAAAGGATAGAGTGGATTTTGAGCTTGGGGAAGAAATTTGATGGTTTTCCATGAGAATTGGGAAGGCCGAGAGAGGAAGCCTGAGGAATAAGAGTAGAACAGCGTGAAAGAAGCTCCATGGATTTTACAAGCACTGCTCTGCTTCAGCTCTCGAAAACCAAGAAGAAGCGGAGAGACGATGACTTTGGGGATTTGGTTGGGTGAGAAATACAGATTC
Homology
[Close]
BLAST of WMU33345 vs. TAIR10
Match: AT5G45390.1 (AT5G45390.1 CLP protease P4)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-18
Identity = 64/138 (46.38%), Postives = 79/138 (57.25%), Query Frame = -3 

Query: 3   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKIHSILFFGFISPQNNRS*TLPEPYAP 62
           M  LS  S+L P   S  L +S    S+ FPK     +     ISP    +   P  +A 
Sbjct: 1   MGTLSLSSSLKPSLVSSRLNSSSSASSSSFPKPNNLYLKPTKLISPPLRTTSPSPLRFAN 60

Query: 63  PCSVLMTGSTDARMPPGEAPRLTPWACFSRERIVFLGNSIDDFVADAIMSQLLLLDAQDS 122
             S+ M+ + ++ +   E+  +       RERIVFLG+SIDDFVADAIMSQLLLLDA+D 
Sbjct: 61  -ASIEMSQTQESAIRGAESDVM---GLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDP 120

Query: 123 TKDIRLFINSAGGSLSAT 182
            KDI+LFINS GGSLSAT
Sbjct: 121 KKDIKLFINSPGGSLSAT 134

Query: 183  242
           
Sbjct: 181  134

Query: 243  302
           
Sbjct: 241  134

Query: 303  362
           
Sbjct: 301  134

Query: 363  417
           
Sbjct: 361  134

[Close]
BLAST of WMU33345 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3)

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-12
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = -3 

Query: 6   RERIVFLGNSIDDFVADAIMSQLLLLDAQDSTKDIRLFINSAGGSLSA 65
           R+RIVFLG+ +DD  AD ++SQLLLLDA+DS +DI LFINS GGS++A
Sbjct: 92  RQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITA 139

Query: 66   125
           
Sbjct: 152  139

Query: 126  150
           
Sbjct: 212  139

[Close]
BLAST of WMU33345 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5)

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-07
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = -3 

Query: 6   RIVFLGNSIDDFVADAIMSQLLLLDAQDSTKDIRLFINSAGGSLSA 65
           RI+  G ++DD +A+ I++QLL LDA D TKDI +++NS GGS++A
Sbjct: 123 RIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTA 168

Query: 66   125
           
Sbjct: 183  168

Query: 126  144
           
Sbjct: 243  168

[Close]
BLAST of WMU33345 vs. Swiss-Prot
Match: CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-17
Identity = 64/138 (46.38%), Postives = 79/138 (57.25%), Query Frame = -3 

Query: 3   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKIHSILFFGFISPQNNRS*TLPEPYAP 62
           M  LS  S+L P   S  L +S    S+ FPK     +     ISP    +   P  +A 
Sbjct: 1   MGTLSLSSSLKPSLVSSRLNSSSSASSSSFPKPNNLYLKPTKLISPPLRTTSPSPLRFAN 60

Query: 63  PCSVLMTGSTDARMPPGEAPRLTPWACFSRERIVFLGNSIDDFVADAIMSQLLLLDAQDS 122
             S+ M+ + ++ +   E+  +       RERIVFLG+SIDDFVADAIMSQLLLLDA+D 
Sbjct: 61  -ASIEMSQTQESAIRGAESDVM---GLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDP 120

Query: 123 TKDIRLFINSAGGSLSAT 182
            KDI+LFINS GGSLSAT
Sbjct: 121 KKDIKLFINSPGGSLSAT 134

Query: 183  242
           
Sbjct: 181  134

Query: 243  302
           
Sbjct: 241  134

Query: 303  362
           
Sbjct: 301  134

Query: 363  417
           
Sbjct: 361  134

[Close]
BLAST of WMU33345 vs. Swiss-Prot
Match: CLPP3_ARATH (ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana GN=CLPP3 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.5e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = -3 

Query: 6   RERIVFLGNSIDDFVADAIMSQLLLLDAQDSTKDIRLFINSAGGSLSA 65
           R+RIVFLG+ +DD  AD ++SQLLLLDA+DS +DI LFINS GGS++A
Sbjct: 92  RQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITA 139

Query: 66   125
           
Sbjct: 152  139

Query: 126  150
           
Sbjct: 212  139

[Close]
BLAST of WMU33345 vs. Swiss-Prot
Match: CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-10
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = -3 

Query: 6   RERIVFLGNSIDDFVADAIMSQLLLLDAQDSTKDIRLFINSAGGSLSA 65
           RERIVFLG  +DD VAD+I++QLL L+A+D  KDI+L+INS GGS++A
Sbjct: 60  RERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTA 107

Query: 66   125
           
Sbjct: 120  107

Query: 126  150
           
Sbjct: 180  107

[Close]
BLAST of WMU33345 vs. Swiss-Prot
Match: CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-10
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = -3 

Query: 6   RERIVFLGNSIDDFVADAIMSQLLLLDAQDSTKDIRLFINSAGGSLSA 65
           RERIVFLG  +DD VAD+I++QLL L+A+D  KDI+L+INS GGS++A
Sbjct: 60  RERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTA 107

Query: 66   125
           
Sbjct: 120  107

Query: 126  150
           
Sbjct: 180  107

[Close]
BLAST of WMU33345 vs. Swiss-Prot
Match: CLPP2_NOSS1 (ATP-dependent Clp protease proteolytic subunit 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-10
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = -3 

Query: 6   RERIVFLGNSIDDFVADAIMSQLLLLDAQDSTKDIRLFINSAGGSLSA 65
           RERI+FLG  IDD VA+ I++QLL LDA+DS KDI+L+INS GGS+ A
Sbjct: 52  RERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYA 99

Query: 66   125
           
Sbjct: 112  99

Query: 126  150
           
Sbjct: 172  99

[Close]
BLAST of WMU33345 vs. TrEMBL
Match: A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G005040 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.7e-34
Identity = 93/146 (63.70%), Postives = 100/146 (68.49%), Query Frame = -3 

Query: 3   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLK-------IHSILFFGFISPQNNRS*T 62
           MELLSRCSTL P ASSLGLPNSHGKPSNFFPKLK         S+L    + P      T
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSR----T 60

Query: 63  LPEPYAPPCSVLMTGST-DARMPPGEAPRLTPWACFSRERIVFLGNSIDDFVADAIMSQL 122
           LP    PPCSV+    T DA     E   +       RERIVFLGNSIDDFVADAI+SQL
Sbjct: 61  LP----PPCSVMTAPQTPDAARRGAETDAM---GLLLRERIVFLGNSIDDFVADAIISQL 120

Query: 123 LLLDAQDSTKDIRLFINSAGGSLSAT 182
           LLLDA+DSTKDIRLFINSAGGSLS+T
Sbjct: 121 LLLDAKDSTKDIRLFINSAGGSLSST 135

Query: 183  242
           
Sbjct: 181  135

Query: 243  302
           
Sbjct: 241  135

Query: 303  362
           
Sbjct: 301  135

Query: 363  417
           
Sbjct: 361  135

[Close]
BLAST of WMU33345 vs. TrEMBL
Match: R0G7S7_9BRAS (ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Capsella rubella GN=CARUB_v10026821mg PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 68/155 (43.87%), Postives = 88/155 (56.77%), Query Frame = -3 

Query: 3   FLVFES*SRAVL--VKSMELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKIHSILFFGF 62
           F  F   SR +L    +M  LS  S+L P   S  L +S    S+ FPK     +     
Sbjct: 1   FPQFSVLSRLLLSFASAMGTLSLSSSLKPSLVSSRLNSSSSASSSSFPKPNSLYLKPTKL 60

Query: 63  ISPQNNRS*TLPEPYAPPCSVLMTGSTDARMPPGEAPRLTPWACFSRERIVFLGNSIDDF 122
           +SP    +   P  +A   S+ M+ + ++ +   E+  +       RERIVFLG+SIDDF
Sbjct: 61  VSPPLRTTSPSPLRFANASSIEMSQTQESAIRGAESDVM---GLLLRERIVFLGSSIDDF 120

Query: 123 VADAIMSQLLLLDAQDSTKDIRLFINSAGGSLSAT 182
           VADAIMSQLLLLDA+D  KDI+LFINS GGSLSAT
Sbjct: 121 VADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSAT 152

Query: 183  242
           
Sbjct: 181  152

Query: 243  302
           
Sbjct: 241  152

Query: 303  362
           
Sbjct: 301  152

Query: 363  422
           
Sbjct: 361  152

Query: 423  462
           
Sbjct: 421  152

[Close]
BLAST of WMU33345 vs. TrEMBL
Match: A0A0B2PR31_GLYSO (ATP-dependent Clp protease proteolytic subunit OS=Glycine soja GN=glysoja_006284 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-16
Identity = 75/154 (48.70%), Postives = 87/154 (56.49%), Query Frame = -3 

Query: 3   MELLSRCSTLIPQASSLGLPNSHGKP---SNFFPKLKIHSIL-------FFGFISPQNNR 62
           M+LLS  S   P  SS+   +S+ KP   S+FF   K HS          F   SP  ++
Sbjct: 1   MDLLS-ISPSHPLPSSIRTLSSNPKPPISSSFFFIPKPHSRFSKTPPRCVFTPASPIPSK 60

Query: 63  S*TLPEPYAPPCSVLM------TGSTDARMPPGEAPRLTPWACFSRERIVFLGNSIDDFV 122
           +      +  P S+        T ST AR   G+   L       RERIVFLG+SIDDFV
Sbjct: 61  NTNFGSQFRNPTSLTFELSSPQTPSTAARGAEGDVMGL-----LLRERIVFLGSSIDDFV 120

Query: 123 ADAIMSQLLLLDAQDSTKDIRLFINSAGGSLSAT 182
           ADAIMSQLLLLDAQD TKDIRLFINS GGSLSAT
Sbjct: 121 ADAIMSQLLLLDAQDPTKDIRLFINSTGGSLSAT 148

Query: 183  242
           
Sbjct: 181  148

Query: 243  302
           
Sbjct: 241  148

Query: 303  362
           
Sbjct: 301  148

Query: 363  417
           
Sbjct: 361  148

[Close]
BLAST of WMU33345 vs. TrEMBL
Match: A0A0D2R6I8_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_004G175000 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.3e-16
Identity = 68/138 (49.28%), Postives = 79/138 (57.25%), Query Frame = -3 

Query: 3   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKIHSILFFGFISPQNNRS*TLPEPYAP 62
           M LLS  S+L P  SSL L   H K S  FP      +      +P ++     P   + 
Sbjct: 1   MGLLSLSSSLTPSFSSLHLKPKH-KLSLTFPNPSF--VCSAPTSTPLSSSLKLKPTANSL 60

Query: 63  PCSVLMTGSTDARMPPGEAPRLTPWACFSRERIVFLGNSIDDFVADAIMSQLLLLDAQDS 122
             S   + +T  R    +A  L       RERIVFLGN+IDDFVADAI+SQLLLLDAQD 
Sbjct: 61  KLSAPQSPATAMRGAEADAMGL-----LLRERIVFLGNNIDDFVADAIISQLLLLDAQDP 120

Query: 123 TKDIRLFINSAGGSLSAT 182
           TKDIRLFINS GGSLSAT
Sbjct: 121 TKDIRLFINSPGGSLSAT 130

Query: 183  242
           
Sbjct: 181  130

Query: 243  302
           
Sbjct: 241  130

Query: 303  362
           
Sbjct: 301  130

Query: 363  417
           
Sbjct: 361  130

[Close]
BLAST of WMU33345 vs. TrEMBL
Match: M5X1H0_PRUPE (ATP-dependent Clp protease proteolytic subunit OS=Prunus persica GN=PRUPE_ppa009315mg PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-15
Identity = 67/145 (46.21%), Postives = 80/145 (55.17%), Query Frame = -3 

Query: 3   MELLSRCSTLIPQASSLGLPNS-HGKPSNFFPKLKIHSILFFGFISPQNNRS*TLPEPYA 62
           M++LS  S +    S+  L +S   KP + FP            +S Q       P+P  
Sbjct: 1   MDVLSISSPIFLHTSTSKLSHSSRSKPISHFPSSSSSKFPTIKSLSVQT------PKPTF 60

Query: 63  PPCSVLMTGS---TDARMPPGEAPRLTPWACFS---RERIVFLGNSIDDFVADAIMSQLL 122
              S  + GS   + A   P  A R T         RERIVFLG+SIDDFVADAI+SQLL
Sbjct: 61  TSKSQALDGSLLISSAPQTPATAMRGTEGDALGLLLRERIVFLGSSIDDFVADAIISQLL 120

Query: 123 LLDAQDSTKDIRLFINSAGGSLSAT 182
           LLDAQDS KDI+LFINS GGSLSAT
Sbjct: 121 LLDAQDSKKDIKLFINSTGGSLSAT 139

Query: 183  242
           
Sbjct: 181  139

Query: 243  302
           
Sbjct: 241  139

Query: 303  362
           
Sbjct: 301  139

Query: 363  417
           
Sbjct: 361  139

[Close]
BLAST of WMU33345 vs. NCBI nr
Match: gi|659095454|ref|XP_008448589.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-35
Identity = 97/146 (66.44%), Postives = 102/146 (69.86%), Query Frame = -3 

Query: 3   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLK-------IHSILFFGFISPQNNRS*T 62
           MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLK         S+L    + P      T
Sbjct: 1   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSR----T 60

Query: 63  LPEPYAPPCSVLMTGST-DARMPPGEAPRLTPWACFSRERIVFLGNSIDDFVADAIMSQL 122
           LP    PPCSV+    T DA     E   +       RERIVFLGNSIDDFVADAI+SQL
Sbjct: 61  LP----PPCSVMTAPQTPDASRRGAETDAM---GLLLRERIVFLGNSIDDFVADAIISQL 120

Query: 123 LLLDAQDSTKDIRLFINSAGGSLSAT 182
           LLLDAQDSTKDIRLFINSAGGSLSAT
Sbjct: 121 LLLDAQDSTKDIRLFINSAGGSLSAT 135

Query: 183  242
           
Sbjct: 181  135

Query: 243  302
           
Sbjct: 241  135

Query: 303  362
           
Sbjct: 301  135

Query: 363  417
           
Sbjct: 361  135

[Close]
BLAST of WMU33345 vs. NCBI nr
Match: gi|449456777|ref|XP_004146125.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 93/146 (63.70%), Postives = 100/146 (68.49%), Query Frame = -3 

Query: 3   MELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLK-------IHSILFFGFISPQNNRS*T 62
           MELLSRCSTL P ASSLGLPNSHGKPSNFFPKLK         S+L    + P      T
Sbjct: 1   MELLSRCSTLTPHASSLGLPNSHGKPSNFFPKLKSTLSFPSASSVLKTTALKPSR----T 60

Query: 63  LPEPYAPPCSVLMTGST-DARMPPGEAPRLTPWACFSRERIVFLGNSIDDFVADAIMSQL 122
           LP    PPCSV+    T DA     E   +       RERIVFLGNSIDDFVADAI+SQL
Sbjct: 61  LP----PPCSVMTAPQTPDAARRGAETDAM---GLLLRERIVFLGNSIDDFVADAIISQL 120

Query: 123 LLLDAQDSTKDIRLFINSAGGSLSAT 182
           LLLDA+DSTKDIRLFINSAGGSLS+T
Sbjct: 121 LLLDAKDSTKDIRLFINSAGGSLSST 135

Query: 183  242
           
Sbjct: 181  135

Query: 243  302
           
Sbjct: 241  135

Query: 303  362
           
Sbjct: 301  135

Query: 363  417
           
Sbjct: 361  135

[Close]
BLAST of WMU33345 vs. NCBI nr
Match: gi|695030976|ref|XP_009402980.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Musa acuminata subsp. malaccensis])

HSP 1 Score: 99.0 bits (245), Expect = 8.6e-18
Identity = 76/175 (43.43%), Postives = 90/175 (51.43%), Query Frame = -3 

Query: 3   ICISHPTKS-----PKSSSLRFFLVFES*SRAVLVKSMELLSRCSTLIPQASSLGLPNSH 62
           +C+S P K      P S SL    +    SR++   S   LS    L+  AS    P SH
Sbjct: 4   LCVSAPLKHSSLLPPSSFSLSPKTLLSPRSRSLRSISPPPLSPIRALVSSASPASKPFSH 63

Query: 63  GKPSNFFPKLKIHSILFFGFISPQNNRS*TLPEPYAPPCSVLMTGSTDARMPPGEAPRLT 122
           G        L+  S       SP ++ S    +P  P  +  M G+    M         
Sbjct: 64  GS-------LESQSYFSSPLSSPFDSFSPASSDPQTPAAA--MRGAESDVM--------- 123

Query: 123 PWACFSRERIVFLGNSIDDFVADAIMSQLLLLDAQDSTKDIRLFINSAGGSLSAT 182
                 RERIVFLG+SIDDFVADAI+SQLLLLDAQD TKDIRLFINSAGGSLSAT
Sbjct: 124 --GLLLRERIVFLGSSIDDFVADAIISQLLLLDAQDHTKDIRLFINSAGGSLSAT 158

Query: 183  242
           
Sbjct: 184  158

Query: 243  302
           
Sbjct: 244  158

Query: 303  362
           
Sbjct: 304  158

Query: 363  422
           
Sbjct: 364  158

Query: 423  482
           
Sbjct: 424  158

Query: 483  513
           
Sbjct: 484  158

[Close]
BLAST of WMU33345 vs. NCBI nr
Match: gi|565430447|ref|XP_006279656.1| (hypothetical protein CARUB_v10026821mg, partial [Capsella rubella])

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 68/155 (43.87%), Postives = 88/155 (56.77%), Query Frame = -3 

Query: 3   FLVFES*SRAVL--VKSMELLSRCSTLIPQASSLGLPNSHGKPSNFFPKLKIHSILFFGF 62
           F  F   SR +L    +M  LS  S+L P   S  L +S    S+ FPK     +     
Sbjct: 1   FPQFSVLSRLLLSFASAMGTLSLSSSLKPSLVSSRLNSSSSASSSSFPKPNSLYLKPTKL 60

Query: 63  ISPQNNRS*TLPEPYAPPCSVLMTGSTDARMPPGEAPRLTPWACFSRERIVFLGNSIDDF 122
           +SP    +   P  +A   S+ M+ + ++ +   E+  +       RERIVFLG+SIDDF
Sbjct: 61  VSPPLRTTSPSPLRFANASSIEMSQTQESAIRGAESDVM---GLLLRERIVFLGSSIDDF 120

Query: 123 VADAIMSQLLLLDAQDSTKDIRLFINSAGGSLSAT 182
           VADAIMSQLLLLDA+D  KDI+LFINS GGSLSAT
Sbjct: 121 VADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSAT 152

Query: 183  242
           
Sbjct: 181  152

Query: 243  302
           
Sbjct: 241  152

Query: 303  362
           
Sbjct: 301  152

Query: 363  422
           
Sbjct: 361  152

Query: 423  462
           
Sbjct: 421  152

[Close]
BLAST of WMU33345 vs. NCBI nr
Match: gi|734348253|gb|KHN11831.1| (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Glycine soja])

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-16
Identity = 75/154 (48.70%), Postives = 87/154 (56.49%), Query Frame = -3 

Query: 3   MELLSRCSTLIPQASSLGLPNSHGKP---SNFFPKLKIHSIL-------FFGFISPQNNR 62
           M+LLS  S   P  SS+   +S+ KP   S+FF   K HS          F   SP  ++
Sbjct: 1   MDLLS-ISPSHPLPSSIRTLSSNPKPPISSSFFFIPKPHSRFSKTPPRCVFTPASPIPSK 60

Query: 63  S*TLPEPYAPPCSVLM------TGSTDARMPPGEAPRLTPWACFSRERIVFLGNSIDDFV 122
           +      +  P S+        T ST AR   G+   L       RERIVFLG+SIDDFV
Sbjct: 61  NTNFGSQFRNPTSLTFELSSPQTPSTAARGAEGDVMGL-----LLRERIVFLGSSIDDFV 120

Query: 123 ADAIMSQLLLLDAQDSTKDIRLFINSAGGSLSAT 182
           ADAIMSQLLLLDAQD TKDIRLFINS GGSLSAT
Sbjct: 121 ADAIMSQLLLLDAQDPTKDIRLFINSTGGSLSAT 148

Query: 183  242
           
Sbjct: 181  148

Query: 243  302
           
Sbjct: 241  148

Query: 303  362
           
Sbjct: 301  148

Query: 363  417
           
Sbjct: 361  148

The following BLAST results are available for this feature:
BLAST of WMU33345 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G45390.11.4e-1846.38 CLP protease P4[more]
AT1G66670.12.6e-1266.67 CLP protease proteolytic subunit 3[more]
AT1G02560.14.2e-0752.17 nuclear encoded CLP protease 5[more]
BLAST of WMU33345 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CLPP4_ARATH2.5e-1746.38ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis t... [more]
CLPP3_ARATH4.5e-1166.67ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis t... [more]
CLPP2_SYNE73.8e-1064.58ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (str... [more]
CLPP3_SYNP63.8e-1064.58ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain AT... [more]
CLPP2_NOSS15.0e-1066.67ATP-dependent Clp protease proteolytic subunit 2 OS=Nostoc sp. (strain PCC 7120 ... [more]
BLAST of WMU33345 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3S1_CUCSA7.7e-3463.70ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G00504... [more]
R0G7S7_9BRAS1.1e-1643.87ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Capsella rubella GN... [more]
A0A0B2PR31_GLYSO1.9e-1648.70ATP-dependent Clp protease proteolytic subunit OS=Glycine soja GN=glysoja_006284... [more]
A0A0D2R6I8_GOSRA7.3e-1649.28ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_00... [more]
M5X1H0_PRUPE1.2e-1546.21ATP-dependent Clp protease proteolytic subunit OS=Prunus persica GN=PRUPE_ppa009... [more]
BLAST of WMU33345 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095454|ref|XP_008448589.1|1.2e-3566.44PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu... [more]
gi|449456777|ref|XP_004146125.1|1.1e-3363.70PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu... [more]
gi|695030976|ref|XP_009402980.1|8.6e-1843.43PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Musa... [more]
gi|565430447|ref|XP_006279656.1|1.2e-1643.87hypothetical protein CARUB_v10026821mg, partial [Capsella rubella][more]
gi|734348253|gb|KHN11831.1|2.1e-1648.70ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Glycine soja][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla008866Cla008866gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0012295S2_0012295EST
S3_0108472S3_0108472EST
S3_0138305S3_0138305EST