WMU28765 (transcribed_cluster) Watermelon (97103) v1

NameWMU28765
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr5 : 94150 .. 105007 (-)
Sequence length412
The following sequences are available for this feature:

transcribed_cluster sequence

AGAAAGCTTAGCAAGCCGTGTCAAGACTTAAGACCAGACCAATTCGATAGTCGATTCATCCGTATTGGATTGGAGGGGAGAGATTTTGGAATTTGCCGAGACTGAGGGTTCCGTTTTGCTGACCACGATTCCCCTGAAAATGTCCGCTCGGCTGCTCAAAAAGGTTTTAAAGGAACAGGAGGAGCTTCAACAGCACTATTCTCAATCCTCCACCACTGAAGACGGACAGGATCCTGGGCCATCGTCACCTACTGCTTCTTCTATCAATCCCTTCGACCTCCTCATCGATGACGAAGATGACTCCCAAATTAACCCTCAACAGGACAATGACCAGGAGGTGGTTGACGAAATCTCCATGGACATGCATAAGCAGTTTGTGCACAATGGAACTAGAAGTGCAATTTCAACCTAC
BLAST of WMU28765 vs. TrEMBL
Match: A0A0A0L889_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116680 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.0e-25
Identity = 63/92 (68.48%), Postives = 68/92 (73.91%), Query Frame = 2

Query: 140 MSARXXXXXXXXXXXXXXHYSQSSTTEDGQDP--GPSSPTASSINPFDLLIDDEDDSQIN 199
           MSAR              HYSQSST EDG D   GPSSPTASSINPFDLLIDDEDDSQI+
Sbjct: 1   MSARLLKKVLKEQEELRQHYSQSSTAEDGHDSGSGPSSPTASSINPFDLLIDDEDDSQID 60

Query: 200 PQQDNDQEVVDEISMDMHKQFVHNGTRSAIST 259
           P QDNDQE V+E+S+D HKQFV NG +SAIST
Sbjct: 61  PHQDNDQEAVEEVSVDRHKQFVCNGAKSAIST 92

Query: 260 319
           
Sbjct: 121 92

Query: 320 379
           
Sbjct: 181 92

Query: 380 410
           
Sbjct: 241 92

BLAST of WMU28765 vs. NCBI nr
Match: gi|700201198|gb|KGN56331.1| (hypothetical protein Csa_3G116680 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 2.7e-22
Identity = 63/92 (68.48%), Postives = 68/92 (73.91%), Query Frame = 2

Query: 140 MSARXXXXXXXXXXXXXXHYSQSSTTEDGQDP--GPSSPTASSINPFDLLIDDEDDSQIN 199
           MSAR              HYSQSST EDG D   GPSSPTASSINPFDLLIDDEDDSQI+
Sbjct: 1   MSARLLKKVLKEQEELRQHYSQSSTAEDGHDSGSGPSSPTASSINPFDLLIDDEDDSQID 60

Query: 200 PQQDNDQEVVDEISMDMHKQFVHNGTRSAIST 259
           P QDNDQE V+E+S+D HKQFV NG +SAIST
Sbjct: 61  PHQDNDQEAVEEVSVDRHKQFVCNGAKSAIST 92

Query: 260 319
           
Sbjct: 121 92

Query: 320 379
           
Sbjct: 181 92

Query: 380 410
           
Sbjct: 241 92

BLAST of WMU28765 vs. NCBI nr
Match: gi|449431938|ref|XP_004133757.1| (PREDICTED: transcription factor 25 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 2.7e-22
Identity = 63/92 (68.48%), Postives = 68/92 (73.91%), Query Frame = 2

Query: 140 MSARXXXXXXXXXXXXXXHYSQSSTTEDGQDP--GPSSPTASSINPFDLLIDDEDDSQIN 199
           MSAR              HYSQSST EDG D   GPSSPTASSINPFDLLIDDEDDSQI+
Sbjct: 1   MSARLLKKVLKEQEELRQHYSQSSTAEDGHDSGSGPSSPTASSINPFDLLIDDEDDSQID 60

Query: 200 PQQDNDQEVVDEISMDMHKQFVHNGTRSAIST 259
           P QDNDQE V+E+S+D HKQFV NG +SAIST
Sbjct: 61  PHQDNDQEAVEEVSVDRHKQFVCNGAKSAIST 92

Query: 260 319
           
Sbjct: 121 92

Query: 320 379
           
Sbjct: 181 92

Query: 380 410
           
Sbjct: 241 92

BLAST of WMU28765 vs. NCBI nr
Match: gi|659074717|ref|XP_008437758.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor 25 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 64/98 (65.31%), Postives = 70/98 (71.43%), Query Frame = 2

Query: 140 MSARXXXXXXXXXXXXXXHYSQSSTTEDGQDP--GPSSPTASSINPFDLLIDDEDDSQIN 199
           MSAR              HYSQSSTTEDGQD   GPSSPTASSINPFDLLID+EDDSQI+
Sbjct: 1   MSARLLKKVLKEQEELRQHYSQSSTTEDGQDSGSGPSSPTASSINPFDLLIDEEDDSQID 60

Query: 200 P------QQDNDQEVVDEISMDMHKQFVHNGTRSAIST 259
           P      QQDND+E V+EIS+D  KQFV NG +SAIST
Sbjct: 61  PHQAVICQQDNDREAVEEISVDSRKQFVRNGAKSAIST 98

Query: 260 319
           
Sbjct: 121 98

Query: 320 379
           
Sbjct: 181 98

Query: 380 410
           
Sbjct: 241 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L889_CUCSA9.0e-2568.48Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700201198|gb|KGN56331.1|2.7e-2268.48hypothetical protein Csa_3G116680 [Cucumis sativus][more]
gi|449431938|ref|XP_004133757.1|2.7e-2268.48PREDICTED: transcription factor 25 [Cucumis sativus][more]
gi|659074717|ref|XP_008437758.1|1.1e-2065.31PREDICTED: LOW QUALITY PROTEIN: transcription factor 25 [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021066Cla021066gene
Cla021065Cla021065gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0051224S1_0051224EST
S1_0150986S1_0150986EST
S2_0005634S2_0005634EST
S2_0051607S2_0051607EST
S2_0060025S2_0060025EST
S2_0112743S2_0112743EST
S2_0144503S2_0144503EST
S2_0160018S2_0160018EST
S3_0112104S3_0112104EST
S4_0152285S4_0152285EST