WMU15308 (transcribed_cluster) Watermelon (97103) v1

NameWMU15308
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr7 : 257724 .. 258875 (+)
Sequence length334
The following sequences are available for this feature:

transcribed_cluster sequence

ATTGCAGGTTGTACGGACTGTTGTGGATTAACTGGTGCTTCCTGAAACCCCAATTGAGATGTCTCTCCTTGATCTCGGTTCTCAGTTGGTGGCATGCTGTTTAAGTCCAAGTCCATTGATTTCCTACGATGATAACCTCTTGCGGTATGTCCCCTCATGGCCTGAGTACTCATCAATATTTTGGAGCTCCTCAGCAACCTGAAATGAACGGTTGAAAAATATCTTGATATTTGAGGTGGTAAATAGATTAGATTAAATGAGATGAGATGAGATGAGATAATTAGTTCTAGGGTTTGTGATATCTGTAGTTGGGGTTCTAAGGGTTGAGAGGTGG
BLAST of WMU15308 vs. NCBI nr
Match: gi|449453284|ref|XP_004144388.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 5.5e-18
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = -3

Query: 3   MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPA 62
           MSTQAMRGHT RGYHRRKS+DLDLNSMPPTENRDQGETSQL  Q+A VN QQ VQPA
Sbjct: 1   MSTQAMRGHTTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPA 57

Query: 63  122
           
Sbjct: 61  57

Query: 123 174
           
Sbjct: 121 57

BLAST of WMU15308 vs. NCBI nr
Match: gi|659120837|ref|XP_008460373.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-17
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = -3

Query: 3   MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPA 62
           MSTQAMRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQL  Q+A VN QQ VQPA
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPA 57

Query: 63  122
           
Sbjct: 61  57

Query: 123 174
           
Sbjct: 121 57

BLAST of WMU15308 vs. NCBI nr
Match: gi|659120828|ref|XP_008460369.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-17
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = -3

Query: 3   MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPA 62
           MSTQAMRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQL  Q+A VN QQ VQPA
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPA 57

Query: 63  122
           
Sbjct: 61  57

Query: 123 174
           
Sbjct: 121 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|449453284|ref|XP_004144388.1|5.5e-1885.96PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus][more]
gi|659120837|ref|XP_008460373.1|2.1e-1784.21PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo][more]
gi|659120828|ref|XP_008460369.1|2.1e-1784.21PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla002710Cla002710gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0154413S2_0154413EST
S3_0042939S3_0042939EST
S3_0071345S3_0071345EST
S3_0078434S3_0078434EST
S3_0101626S3_0101626EST
S3_0126738S3_0126738EST
S3_0182949S3_0182949EST