Cla002710 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002710
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Zinc finger family protein (AHRD V1 ***- D7L6H8_ARALL)
Location	Chr7 : 257459 .. 257881 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGGACATACCGCAAGAGGTTATCATCGTAGGAAATCAATGGACTTGGACTTAAACAGCATGCCACCAACTGAGAACCGAGATCAAGGAGAGACATCTCAATTGGGGTTTCAGGAAGCACCAGTTAATCCACAACAGTCCGTACAACCTGCAATGATTGACATTGAGGCCCTTGATGATGATGTCATTGAATCATCCGCCAGAGCTTTTGCTGAAGTATGTTTCCTGTGGCTTCCCTTGAATGCTTAATACTTGCGATTATTCTATCCATATTATATTCTTGTTCTATTGATTCTGATCTGTATTCCGTGAATTCCATTGATTTTCTGTCAGGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAATATAGTTGATGTGGATGCAGGTATGTATATTTCAGCTGGTGGAGGACTTTAG

mRNA sequence

ATGAGGGGACATACCGCAAGAGGTTATCATCGTAGGAAATCAATGGACTTGGACTTAAACAGCATGCCACCAACTGAGAACCGAGATCAAGGAGAGACATCTCAATTGGGGTTTCAGGAAGCACCAGTTAATCCACAACAGTCCGTACAACCTGCAATGATTGACATTGAGGCCCTTGATGATGATGTCATTGAATCATCCGCCAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAATATAGTTGATGTGGATGCAGGTATGTATATTTCAGCTGGTGGAGGACTTTAG

Coding sequence (CDS)

ATGAGGGGACATACCGCAAGAGGTTATCATCGTAGGAAATCAATGGACTTGGACTTAAACAGCATGCCACCAACTGAGAACCGAGATCAAGGAGAGACATCTCAATTGGGGTTTCAGGAAGCACCAGTTAATCCACAACAGTCCGTACAACCTGCAATGATTGACATTGAGGCCCTTGATGATGATGTCATTGAATCATCCGCCAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAATATAGTTGATGTGGATGCAGGTATGTATATTTCAGCTGGTGGAGGACTTTAG

Protein sequence

MRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMIDIEALDDDVIESSARAFAEAKNKSRRNARKNIVDVDAGMYISAGGGL

Homology

[Close]

BLAST of Cla002710 vs. TrEMBL
Match: A0A0A0LBP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G630250 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.1e-30
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 22  MPPTENRDQGETSQLGFQEAPVNPQQSVQPAMIDIEALDDDVIESSARAFAEAKNKSRRN 81
           MPPTENRDQGETSQL  Q+A VN QQ VQPAMIDIEA+DDDVIESSARAFAEAKNKSRRN
Sbjct: 1   MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRN 60

Query: 82  ARKNIVDVDAGMYISAGGGL 102
           ARKN+VDVDAG++ISAGG L
Sbjct: 61  ARKNVVDVDAGLFISAGGAL 80

[Close]

BLAST of Cla002710 vs. TrEMBL
Match: A0A0D2SKU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G156200 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 51/93 (54.84%), Postives = 70/93 (75.27%), Query Frame = 1


Query: 1  MRGHTARGYHRRKSMDLDLNSMPPTENRDQ-GETSQLGFQEAPVNPQQSVQPAMIDIEAL 60
          +RG + RGY RRK++ LDLN +PP+E R+Q G + Q G+++      Q+  PA ID+EA+
Sbjct: 6  IRGPSLRGYRRRKAV-LDLN-VPPSEIREQEGTSQQAGYEDQTNQSVQTGPPATIDVEAI 65

Query: 61 DDDVIESSARAFAEAKNKSRRNARKNIVDVDAG 93
          DDDVIESSARAFAEA+N SRR+  + +VDVD+G
Sbjct: 66 DDDVIESSARAFAEAQNNSRRSRGRTVVDVDSG 96

[Close]

BLAST of Cla002710 vs. TrEMBL
Match: A0A0D2QTJ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G156200 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 51/93 (54.84%), Postives = 70/93 (75.27%), Query Frame = 1


Query: 1  MRGHTARGYHRRKSMDLDLNSMPPTENRDQ-GETSQLGFQEAPVNPQQSVQPAMIDIEAL 60
          +RG + RGY RRK++ LDLN +PP+E R+Q G + Q G+++      Q+  PA ID+EA+
Sbjct: 6  IRGPSLRGYRRRKAV-LDLN-VPPSEIREQEGTSQQAGYEDQTNQSVQTGPPATIDVEAI 65

Query: 61 DDDVIESSARAFAEAKNKSRRNARKNIVDVDAG 93
          DDDVIESSARAFAEA+N SRR+  + +VDVD+G
Sbjct: 66 DDDVIESSARAFAEAQNNSRRSRGRTVVDVDSG 96

[Close]

BLAST of Cla002710 vs. TrEMBL
Match: A0A0B0N1C0_GOSAR (E3 ubiquitin ligase RNF4 OS=Gossypium arboreum GN=F383_30452 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 1  MRGHTARGYHRRKSMDLDLNSMPPTENRDQ-GETSQLGFQEAPVNPQQSVQPAMIDIEAL 60
          ++G + RGY RRK++ LDLN +PPTE R+Q G + Q G ++    P Q   PA ID+EA+
Sbjct: 6  VKGPSLRGYRRRKAL-LDLN-VPPTEIREQEGTSQQAGSEQLTAQPVQPPPPATIDVEAI 65

Query: 61 DDDVIESSARAFAEAKNKSRRNARKNIVDVDAG 93
          DDDVIESSA AFA AKN SRR+  + +VDVD+G
Sbjct: 66 DDDVIESSAIAFAAAKNNSRRSRGRTVVDVDSG 96

[Close]

BLAST of Cla002710 vs. TrEMBL
Match: A0A0D2SKT6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G156200 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-16
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 1


Query: 1   MRGHTARGYHRRKSMDLDLNSMPPTENRDQ-GETSQLGFQEAPVNPQQSVQPAMIDIEAL 60
           +RG + RGY RRK++ LDLN +PP+E R+Q G + Q G+++      Q+  PA ID+EA+
Sbjct: 6   IRGPSLRGYRRRKAV-LDLN-VPPSEIREQEGTSQQAGYEDQTNQSVQTGPPATIDVEAI 65

Query: 61  DDDVIESSARAFAEAKNKSRRNARKNIVDVDAGMYISA 98
           DDDVIESSARAFAEA+N SRR+  + +VDVD+  +ISA
Sbjct: 66  DDDVIESSARAFAEAQNNSRRSRGRTVVDVDSA-HISA 100

[Close]

BLAST of Cla002710 vs. NCBI nr
Match: gi|449453284|ref|XP_004144388.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 7.5e-38
Identity = 81/91 (89.01%), Postives = 85/91 (93.41%), Query Frame = 1


Query: 1  MRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMIDIEALD 60
          MRGHT RGYHRRKS+DLDLNSMPPTENRDQGETSQL  Q+A VN QQ VQPAMIDIEA+D
Sbjct: 6  MRGHTTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAID 65

Query: 61 DDVIESSARAFAEAKNKSRRNARKNIVDVDA 92
          DDVIESSARAFAEAKNKSRRNARKN+VDVDA
Sbjct: 66 DDVIESSARAFAEAKNKSRRNARKNVVDVDA 96

[Close]

BLAST of Cla002710 vs. NCBI nr
Match: gi|659120837|ref|XP_008460373.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 2.9e-37
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMIDIEALD 60
          MRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQL  Q+A VN QQ VQPAMIDIEA+D
Sbjct: 6  MRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAID 65

Query: 61 DDVIESSARAFAEAKNKSRRNARKNIVDVDA 92
          DDVIESSARAFAEAKNKSRRNARKN+VDVDA
Sbjct: 66 DDVIESSARAFAEAKNKSRRNARKNVVDVDA 96

[Close]

BLAST of Cla002710 vs. NCBI nr
Match: gi|659120828|ref|XP_008460369.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 2.9e-37
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMIDIEALD 60
          MRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQL  Q+A VN QQ VQPAMIDIEA+D
Sbjct: 6  MRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAID 65

Query: 61 DDVIESSARAFAEAKNKSRRNARKNIVDVDA 92
          DDVIESSARAFAEAKNKSRRNARKN+VDVDA
Sbjct: 66 DDVIESSARAFAEAKNKSRRNARKNVVDVDA 96

[Close]

BLAST of Cla002710 vs. NCBI nr
Match: gi|700203236|gb|KGN58369.1| (hypothetical protein Csa_3G630250 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 4.4e-30
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 22  MPPTENRDQGETSQLGFQEAPVNPQQSVQPAMIDIEALDDDVIESSARAFAEAKNKSRRN 81
           MPPTENRDQGETSQL  Q+A VN QQ VQPAMIDIEA+DDDVIESSARAFAEAKNKSRRN
Sbjct: 1   MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRN 60

Query: 82  ARKNIVDVDAGMYISAGGGL 102
           ARKN+VDVDAG++ISAGG L
Sbjct: 61  ARKNVVDVDAGLFISAGGAL 80

[Close]

BLAST of Cla002710 vs. NCBI nr
Match: gi|823189552|ref|XP_012490871.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X8 [Gossypium raimondii])

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 51/93 (54.84%), Postives = 70/93 (75.27%), Query Frame = 1


Query: 1  MRGHTARGYHRRKSMDLDLNSMPPTENRDQ-GETSQLGFQEAPVNPQQSVQPAMIDIEAL 60
          +RG + RGY RRK++ LDLN +PP+E R+Q G + Q G+++      Q+  PA ID+EA+
Sbjct: 6  IRGPSLRGYRRRKAV-LDLN-VPPSEIREQEGTSQQAGYEDQTNQSVQTGPPATIDVEAI 65

Query: 61 DDDVIESSARAFAEAKNKSRRNARKNIVDVDAG 93
          DDDVIESSARAFAEA+N SRR+  + +VDVD+G
Sbjct: 66 DDDVIESSARAFAEAQNNSRRSRGRTVVDVDSG 96

The following BLAST results are available for this feature:

BLAST of Cla002710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBP4_CUCSA	3.1e-30	86.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G630250 PE=4 SV=1	[more]
A0A0D2SKU0_GOSRA	1.1e-16	54.84	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G156200 PE=4 SV=1	[more]
A0A0D2QTJ1_GOSRA	1.1e-16	54.84	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G156200 PE=4 SV=1	[more]
A0A0B0N1C0_GOSAR	2.5e-16	54.84	E3 ubiquitin ligase RNF4 OS=Gossypium arboreum GN=F383_30452 PE=4 SV=1	[more]
A0A0D2SKT6_GOSRA	3.3e-16	54.08	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G156200 PE=4 SV=1	[more]

BLAST of Cla002710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453284\|ref\|XP_004144388.1\|	7.5e-38	89.01	PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus]	[more]
gi\|659120837\|ref\|XP_008460373.1\|	2.9e-37	87.91	PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo]	[more]
gi\|659120828\|ref\|XP_008460369.1\|	2.9e-37	87.91	PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo]	[more]
gi\|700203236\|gb\|KGN58369.1\|	4.4e-30	86.25	hypothetical protein Csa_3G630250 [Cucumis sativus]	[more]
gi\|823189552\|ref\|XP_012490871.1\|	1.6e-16	54.84	PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X8 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU15308	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002710	Cla002710.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU15308	WMU15308	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002710	Csa3G630250	Cucumber (Chinese Long) v2	cuwmB227
Cla002710	MELO3C022715	Melon (DHL92) v3.5.1	mewmB364
Cla002710	CSPI03G27620	Wild cucumber (PI 183967)	cpiwmB225
Cla002710	Lsi05G011260	Bottle gourd (USVL1VR-Ls)	lsiwmB357

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002710	Cucurbita maxima (Rimu)	cmawmB492
Cla002710	Cucurbita maxima (Rimu)	cmawmB559
Cla002710	Cucurbita moschata (Rifu)	cmowmB486
Cla002710	Cucurbita moschata (Rifu)	cmowmB552
Cla002710	Cucurbita moschata (Rifu)	cmowmB791
Cla002710	Melon (DHL92) v3.5.1	mewmB460
Cla002710	Watermelon (Charleston Gray)	wcgwmB026
Cla002710	Cucumber (Chinese Long) v2	cuwmB223
Cla002710	Watermelon (Charleston Gray)	wcgwmB282
Cla002710	Watermelon (Charleston Gray)	wcgwmB374
Cla002710	Cucumber (Chinese Long) v2	cuwmB587
Cla002710	Cucurbita pepo (Zucchini)	cpewmB258
Cla002710	Cucurbita pepo (Zucchini)	cpewmB701
Cla002710	Cucurbita pepo (Zucchini)	cpewmB843
Cla002710	Bottle gourd (USVL1VR-Ls)	lsiwmB194
Cla002710	Bottle gourd (USVL1VR-Ls)	lsiwmB360
Cla002710	Cucumber (Gy14) v2	cgybwmB209
Cla002710	Cucumber (Gy14) v2	cgybwmB212
Cla002710	Cucumber (Gy14) v2	cgybwmB549
Cla002710	Melon (DHL92) v3.6.1	medwmB362
Cla002710	Melon (DHL92) v3.6.1	medwmB445
Cla002710	Silver-seed gourd	carwmB0285
Cla002710	Silver-seed gourd	carwmB0779
Cla002710	Cucumber (Chinese Long) v3	cucwmB234
Cla002710	Watermelon (97103) v2	wmwmbB162
Cla002710	Watermelon (97103) v2	wmwmbB176
Cla002710	Wax gourd	wgowmB266
Cla002710	Watermelon (97103) v1	wmwmB100
Cla002710	Cucumber (Gy14) v1	cgywmB084
Cla002710	Cucumber (Gy14) v1	cgywmB266
Cla002710	Cucumber (Gy14) v1	cgywmB476