WMU12461 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU12461
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description10 kDa chaperonin
LocationChr4 : 16518715 .. 16520212 (+)
Sequence length406
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

AAGGACCTCTCTTACAATTTGCAAAGTTCTTCTTCATCGTTTTGTTTTTAGGGTTTTAGGTTTGAGATTCAATTTCTTCCGATTGCTTCAAATGGCGAAGCGTTTGGTTCCATTGCTGAATCGCGTTCTGATCGAGAAGATCGTGCCTCCTGCCAAAACCAATTCCGGCATTCTGCTTCCTGAGAAGTCCAGTAAGCTTAACTCTGGAAAAAGTTATCTCTGTTGGTCCTGGGGCTCGTGATAGAGAGGGGAAAAGATTTATTCCCTGTCACTGTAAAAGAAGGTGACACCGTCCTCCTACCAGAATATGGAGGCACTGAAGTCAAGCTTGGAGAAAAAACAGTATGTATACTTGTTCTCTTACTTTTGTTATTTATTTAAGTTTTGGTCTGTTATTTGCTCAAGA
Homology
[Close]
BLAST of WMU12461 vs. TAIR10
Match: AT1G23100.1 (AT1G23100.1 GroES-like family protein)

HSP 1 Score: 68.2 bits (165), Expect = 4.5e-12
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           MAKRL+P LNRVL+EKI+PP+KT SGILLPEKSS+LNSG+
Sbjct: 1   MAKRLIPTLNRVLVEKILPPSKTVSGILLPEKSSQLNSGR 40

Query: 152  211
           
Sbjct: 61   40


HSP 2 Score: 52.0 bits (123), Expect = 3.4e-07
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 1 

Query: 244 ERGKDLFPVTVKEGDTVLLPEYGGTEVKLGEK 303
           +R  +L PV+VKEGD VLLPE+GGT+VKLGEK
Sbjct: 50  DRAGNLIPVSVKEGDNVLLPEFGGTQVKLGEK 81

Query: 304  340
           
Sbjct: 110  81

[Close]
BLAST of WMU12461 vs. TAIR10
Match: AT1G14980.1 (AT1G14980.1 chaperonin 10)

HSP 1 Score: 64.3 bits (155), Expect = 6.5e-11
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           M KRL+P  NR+L+++++ PAKT SGILLPEKSSKLNSGK
Sbjct: 1   MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGK 40

Query: 152  211
           
Sbjct: 61   40


HSP 2 Score: 52.0 bits (123), Expect = 3.4e-07
Identity = 26/32 (81.25%), Postives = 26/32 (81.25%), Query Frame = 1 

Query: 247 RGKD--LFPVTVKEGDTVLLPEYGGTEVKLGE 306
           R KD  L PV+VKEGDTVLLPEYGGT+VKLGE
Sbjct: 49  RDKDGKLIPVSVKEGDTVLLPEYGGTQVKLGE 80

Query: 307  337
           
Sbjct: 109  80


HSP 3 Score: 29.6 bits (65), Expect = 1.8e+00
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 3 

Query: 210 KVISVGPGARDREGKRFIPCHCK 269
           KVI+VGPG+RD++GK  IP   K
Sbjct: 40  KVIAVGPGSRDKDGK-LIPVSVK 61

Query: 270  279
           
Sbjct: 100  61

[Close]
BLAST of WMU12461 vs. Swiss-Prot
Match: CH10_ARATH (10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           M KRL+P  NR+L+++++ PAKT SGILLPEKSSKLNSGK
Sbjct: 1   MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGK 40

Query: 152  211
           
Sbjct: 61   40


HSP 2 Score: 52.0 bits (123), Expect = 6.0e-06
Identity = 26/32 (81.25%), Postives = 26/32 (81.25%), Query Frame = 1 

Query: 247 RGKD--LFPVTVKEGDTVLLPEYGGTEVKLGE 306
           R KD  L PV+VKEGDTVLLPEYGGT+VKLGE
Sbjct: 49  RDKDGKLIPVSVKEGDTVLLPEYGGTQVKLGE 80

Query: 307  337
           
Sbjct: 109  80


HSP 3 Score: 29.6 bits (65), Expect = 3.1e+01
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 3 

Query: 210 KVISVGPGARDREGKRFIPCHCK 269
           KVI+VGPG+RD++GK  IP   K
Sbjct: 40  KVIAVGPGSRDKDGK-LIPVSVK 61

Query: 270  279
           
Sbjct: 100  61

[Close]
BLAST of WMU12461 vs. Swiss-Prot
Match: CH10_BRANA (10 kDa chaperonin OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.5e-09
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           M KRL+P  NR+L++ ++ PAKT SGILLPEK+SKLNSGK
Sbjct: 1   MMKRLIPTFNRILVQGVIQPAKTESGILLPEKASKLNSGK 40

Query: 152  211
           
Sbjct: 61   40


HSP 2 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 27/33 (81.82%), Postives = 27/33 (81.82%), Query Frame = 1 

Query: 247 RGKD--LFPVTVKEGDTVLLPEYGGTEVKLGEK 306
           R KD  L PV+VKEGDTVLLPEYGGT+VKLGEK
Sbjct: 49  RDKDGKLIPVSVKEGDTVLLPEYGGTQVKLGEK 81

Query: 307  340
           
Sbjct: 109  81


HSP 3 Score: 29.6 bits (65), Expect = 3.1e+01
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 3 

Query: 210 KVISVGPGARDREGKRFIPCHCK 269
           KVI+VGPG+RD++GK  IP   K
Sbjct: 40  KVIAVGPGSRDKDGK-LIPVSVK 61

Query: 270  279
           
Sbjct: 100  61

[Close]
BLAST of WMU12461 vs. TrEMBL
Match: A0A0A0KYT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G426760 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.6e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           MAKRL+PLLNRVLIEKIVPP KTNSGILLPEKS+KLNSGK
Sbjct: 1   MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGK 40

Query: 152  211
           
Sbjct: 61   40

[Close]
BLAST of WMU12461 vs. TrEMBL
Match: A0A0A0KYT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G426760 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.3e-03
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 

Query: 244 ERGKDLFPVTVKEGDTVLLPEYGGTEVKLGEK 303
           +R   + P++VKEGD VLLPEYGG EVKLGEK
Sbjct: 50  DREGKIIPISVKEGDMVLLPEYGGNEVKLGEK 81

Query: 304  340
           
Sbjct: 110  81


HSP 2 Score: 33.1 bits (74), Expect = 3.2e+02
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 3 

Query: 210 KVISVGPGARDREGKRFIPCHCK 269
           KVI+VGPGARDREGK  IP   K
Sbjct: 40  KVIAVGPGARDREGK-IIPISVK 61

Query: 270  279
           
Sbjct: 100  61


HSP 3 Score: 74.7 bits (182), Expect = 9.6e-11
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           MAKRL+PL NRVL+EKIVPP+KTN+GILLPEKSSKLNSGK
Sbjct: 1   MAKRLIPLFNRVLVEKIVPPSKTNAGILLPEKSSKLNSGK 40

Query: 152  211
           
Sbjct: 61   40

[Close]
BLAST of WMU12461 vs. TrEMBL
Match: A0A0L9U7G2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g212700 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-02
Identity = 22/27 (81.48%), Postives = 22/27 (81.48%), Query Frame = 1 

Query: 259 LFPVTVKEGDTVLLPEYGGTEVKLGEK 318
           L PV V EGDTVLLPEYGGTEVKL  K
Sbjct: 55  LIPVAVNEGDTVLLPEYGGTEVKLDNK 81

Query: 319  340
           
Sbjct: 115  81


HSP 2 Score: 74.7 bits (182), Expect = 9.6e-11
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           MAKRL+PL NRVL+EKIVPP+KTN+GILLPEKSSKLNSGK
Sbjct: 1   MAKRLIPLFNRVLVEKIVPPSKTNAGILLPEKSSKLNSGK 40

Query: 152  211
           
Sbjct: 61   40

[Close]
BLAST of WMU12461 vs. TrEMBL
Match: C6SZ55_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G125800 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.3e-03
Identity = 23/27 (85.19%), Postives = 23/27 (85.19%), Query Frame = 1 

Query: 259 LFPVTVKEGDTVLLPEYGGTEVKLGEK 318
           L PV VKEGDTVLLPEYGGTEVKL  K
Sbjct: 55  LIPVAVKEGDTVLLPEYGGTEVKLDNK 81

Query: 319  340
           
Sbjct: 115  81


HSP 2 Score: 74.7 bits (182), Expect = 9.6e-11
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           MAKRL+PL NRVL+EKIVPP+KTN+GILLPEKSSKLNSGK
Sbjct: 1   MAKRLIPLFNRVLVEKIVPPSKTNAGILLPEKSSKLNSGK 40

Query: 152  211
           
Sbjct: 61   40

[Close]
BLAST of WMU12461 vs. TrEMBL
Match: A0A0B2REQ7_GLYSO (10 kDa chaperonin OS=Glycine soja GN=glysoja_025834 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.3e-03
Identity = 23/27 (85.19%), Postives = 23/27 (85.19%), Query Frame = 1 

Query: 259 LFPVTVKEGDTVLLPEYGGTEVKLGEK 318
           L PV VKEGDTVLLPEYGGTEVKL  K
Sbjct: 55  LIPVAVKEGDTVLLPEYGGTEVKLDNK 81

Query: 319  340
           
Sbjct: 115  81


HSP 2 Score: 74.7 bits (182), Expect = 9.6e-11
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           MAKRL+PL NRVL+EKIVPP+KTN+GILLPEKSSKLNSGK
Sbjct: 1   MAKRLIPLFNRVLVEKIVPPSKTNAGILLPEKSSKLNSGK 40

Query: 152  211
           
Sbjct: 61   40

[Close]
BLAST of WMU12461 vs. NCBI nr
Match: gi|659111415|ref|XP_008455733.1| (PREDICTED: 10 kDa chaperonin-like [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 8.0e-11
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           MAKRL+PLLNRVLIEKIVPP KTNSGILLPEKSSKLNSGK
Sbjct: 1   MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGK 40

Query: 152  211
           
Sbjct: 61   40

[Close]
BLAST of WMU12461 vs. NCBI nr
Match: gi|1012262642|ref|XP_015946516.1| (PREDICTED: 10 kDa chaperonin-like [Arachis duranensis])

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 36/40 (90.00%), Postives = 40/40 (100.00%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           MAKRLVPLLNRVL+EKIVPP+KTN+GILLPEKS+KLNSGK
Sbjct: 1   MAKRLVPLLNRVLVEKIVPPSKTNAGILLPEKSTKLNSGK 40

Query: 152  211
           
Sbjct: 61   40

[Close]
BLAST of WMU12461 vs. NCBI nr
Match: gi|449453157|ref|XP_004144325.1| (PREDICTED: 10 kDa chaperonin-like [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           MAKRL+PLLNRVLIEKIVPP KTNSGILLPEKS+KLNSGK
Sbjct: 1   MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGK 40

Query: 152  211
           
Sbjct: 61   40

[Close]
BLAST of WMU12461 vs. NCBI nr
Match: gi|645270941|ref|XP_008240684.1| (PREDICTED: 10 kDa chaperonin-like [Prunus mume])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 35/40 (87.50%), Postives = 40/40 (100.00%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           MAKRLVPLLNRVL+EKI+PP+KTN+GILLPEKS+KLNSGK
Sbjct: 1   MAKRLVPLLNRVLVEKIIPPSKTNAGILLPEKSTKLNSGK 40

Query: 152  211
           
Sbjct: 61   40

[Close]
BLAST of WMU12461 vs. NCBI nr
Match: gi|951071347|ref|XP_014491183.1| (PREDICTED: 10 kDa chaperonin-like [Vigna radiata var. radiata])

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 2 

Query: 92  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGK 151
           MAKRL+PL NRVL+EKIVPP+KTN+GILLPEKSSKLNSGK
Sbjct: 1   MAKRLIPLFNRVLVEKIVPPSKTNAGILLPEKSSKLNSGK 40

Query: 152  211
           
Sbjct: 61   40

The following BLAST results are available for this feature:
BLAST of WMU12461 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G23100.14.5e-1280.00 GroES-like family protein[more]
AT1G14980.16.5e-1170.00 chaperonin 10[more]
BLAST of WMU12461 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CH10_ARATH1.2e-0970.0010 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=3 SV=1[more]
CH10_BRANA7.5e-0967.5010 kDa chaperonin OS=Brassica napus PE=3 SV=1[more]
BLAST of WMU12461 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYT6_CUCSA5.6e-1192.50Uncharacterized protein OS=Cucumis sativus GN=Csa_4G426760 PE=3 SV=1[more]
A0A0A0KYT6_CUCSA3.3e-0368.75Uncharacterized protein OS=Cucumis sativus GN=Csa_4G426760 PE=3 SV=1[more]
A0A0L9U7G2_PHAAN1.6e-0281.48Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g212700 PE=3 SV=1[more]
C6SZ55_SOYBN4.3e-0385.19Uncharacterized protein OS=Glycine max GN=GLYMA_03G125800 PE=2 SV=1[more]
A0A0B2REQ7_GLYSO4.3e-0385.1910 kDa chaperonin OS=Glycine soja GN=glysoja_025834 PE=3 SV=1[more]
BLAST of WMU12461 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111415|ref|XP_008455733.1|8.0e-1195.00PREDICTED: 10 kDa chaperonin-like [Cucumis melo][more]
gi|1012262642|ref|XP_015946516.1|1.8e-1090.00PREDICTED: 10 kDa chaperonin-like [Arachis duranensis][more]
gi|449453157|ref|XP_004144325.1|1.8e-1092.50PREDICTED: 10 kDa chaperonin-like [Cucumis sativus][more]
gi|645270941|ref|XP_008240684.1|2.3e-1087.50PREDICTED: 10 kDa chaperonin-like [Prunus mume][more]
gi|951071347|ref|XP_014491183.1|3.1e-1087.50PREDICTED: 10 kDa chaperonin-like [Vigna radiata var. radiata][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla012094Cla012094gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0107383S2_0107383EST
S2_0158587S2_0158587EST