WMU09287 (transcribed_cluster) Watermelon (97103) v1

NameWMU09287
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr3 : 24093460 .. 24093935 (+)
Sequence length477
The following sequences are available for this feature:

transcribed_cluster sequence

CGAAAGCTGTCAAGAAGTCGAGGTTTAGTTATCCAAACCGTTGTTGAAGATTCTCCTGATAATGGTTCTCATTCAGGTGCGACTGCAATTTTGAGGTGCAAGAGAAAGCTTAGTCAAGGTTAGGTTGATTAATTAGAGCTCCGAAAGCTCCCAAATGTGAATGCTTCTTTTTGTTCTGTTGGTTGTATATTTAATGGCTGTCTTGTAAATAGGTAATTAGGTTCTAAGAGAAAATGATTGGCAAATTTAACTTTTCTTACAGAGTTTCGATTAAGTTGTAATGATGATTGCGAAGTACTATGCCTTTTGGGTAGCTTAGATCAAGCTCCAATCATTTTGTAAAGGTTCTTTTTTGTTTGAACGGGGAATGATGATAGCCTGAAAGTAGTGCCAGGGGCATTTGTTTTGTGATTTTTATGAACAAAATATATGGATTTCGAATTAGGTTTAAATGCTATTAGTCTTTTTATAGTTTAC
BLAST of WMU09287 vs. TrEMBL
Match: A0A0A0LZJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G605680 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-09
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1

Query: 1   RKLSRSRGLVIQTVVEDSPDNGSHSGATAILRCKRKLSQG*VD 60
           RKLSR+RGLV+Q+VVEDSPDNGS SGATAILR KRKLSQG V+
Sbjct: 373 RKLSRNRGLVMQSVVEDSPDNGSQSGATAILRGKRKLSQGWVN 415

Query: 61  120
           
Sbjct: 433 415

Query: 121 130
           
Sbjct: 493 415

BLAST of WMU09287 vs. NCBI nr
Match: gi|449462613|ref|XP_004149035.1| (PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-09
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1

Query: 1   RKLSRSRGLVIQTVVEDSPDNGSHSGATAILRCKRKLSQG*VD 60
           RKLSR+RGLV+Q+VVEDSPDNGS SGATAILR KRKLSQG V+
Sbjct: 373 RKLSRNRGLVMQSVVEDSPDNGSQSGATAILRGKRKLSQGWVN 415

Query: 61  120
           
Sbjct: 433 415

Query: 121 130
           
Sbjct: 493 415

BLAST of WMU09287 vs. NCBI nr
Match: gi|659100485|ref|XP_008451119.1| (PREDICTED: non-structural maintenance of chromosomes element 4 homolog A [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 8.9e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1

Query: 1   RKLSRSRGLVIQTVVEDSPDNGSHSGATAILRCKRKLSQG 60
           RKLSR+RGLV+Q+VVEDSPDNGS SG TAILR KRKLSQG
Sbjct: 369 RKLSRNRGLVMQSVVEDSPDNGSQSGPTAILRGKRKLSQG 408

Query: 61  120
           
Sbjct: 429 408

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LZJ0_CUCSA2.8e-0983.72Uncharacterized protein OS=Cucumis sativus GN=Csa_1G605680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449462613|ref|XP_004149035.1|1.0e-0983.72PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [C... [more]
gi|659100485|ref|XP_008451119.1|8.9e-0985.00PREDICTED: non-structural maintenance of chromosomes element 4 homolog A [Cucumi... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla004793Cla004793gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0115384S1_0115384EST
S2_0142163S2_0142163EST
S3_0065904S3_0065904EST
S3_0100799S3_0100799EST