MU65909 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU65909
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ADP-ribosylation factor
Location	chr3 : 18558595 .. 18559613 (+)
Sequence length	843

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AACGCATCCATCCAGAACGCCGCCGACGCCTCTCGTGCTCACCCATCCCAAACGTCACCGAACGTCGAACGCCAAACGCTAACTTCCATTCGAACGTCGAACGCCTAACGCGAACGCCTAACGCGAACGCGAACGCCGCTCCCCGTCTCTTTTGCTGTCTTTGTTGTTTGTTAGGCTGCTTGATTTGATTACTTTTGTTGGTTTCTTTTTTTTTACGTATCAGGTTCTTAGACAAATTGAAAATACCCGGCTAAGGAAAAGGAGAAATGGGATTGACCTTCACCAACCTTTTCAATAGGCTTTTTGCAAAGAAGGAGATGCAGATTTTGATGGTTGGTCTTGATGCTGCTGAAAAGACCACGATCTTGTACAAGCTCAAGCTCGGAGAAATTGTCACAACTATTCCTACAATGGGTGGCATTGGCGGGTACCTCCTTTTCGTTTCTTCAGAGAGTTGGTGCTGTGGTGCGTAATGGGGGCAAGCTATTTGCTGTAGGGAGTGGTGCATCTGTGGTAAGTCAGTTGTTTTCCCCCTTTGTTCTGCCTTTGGCTTGATTTAAGCAATTACGTTGCCTCTTAACTATTACTCGGCGCTGTCACTGCGTTATGGTCTGTAGATAATATAATATTAAATTTATCGTGGTATGTGGTTCGAAGGATTTCTTTTCGTTAAAACCTCTTCCATGTTATTTCATCCCAAAGTTAATATTAGCTTAAGCTTTTTGATCAATGGTGATTTAGGATGGACTGGGAACATTTGAAATCACTTTTATCAAACTCCATATGGTTTAGAGTTTGGTATGGGAACATTTTTTTGTACTGAGGTCAATATATACCTATACT

Library


Library category	ESTs
melon CM-TEa library	1

Homology

[Close]

BLAST of MU65909 vs. Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 5.3e-17
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 3


Query: 267 MGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 326
           MGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

Query: 327  386
           
Sbjct: 61   50

Query: 387  417
           
Sbjct: 121  50

[Close]

BLAST of MU65909 vs. Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 5.3e-17
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 3


Query: 267 MGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 326
           MGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

Query: 327  386
           
Sbjct: 61   50

Query: 387  417
           
Sbjct: 121  50

[Close]

BLAST of MU65909 vs. Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 89.7 bits (221), Expect = 5.3e-17
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 3


Query: 267 MGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 326
           MGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

Query: 327  386
           
Sbjct: 61   50

Query: 387  417
           
Sbjct: 121  50

[Close]

BLAST of MU65909 vs. Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-16
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 3


Query: 267 MGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 326
           MGL+FT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

Query: 327  386
           
Sbjct: 61   50

Query: 387  417
           
Sbjct: 121  50

[Close]

BLAST of MU65909 vs. Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-16
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 3


Query: 267 MGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 326
           MGL+FT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

Query: 327  386
           
Sbjct: 61   50

Query: 387  417
           
Sbjct: 121  50

[Close]

BLAST of MU65909 vs. TrEMBL
Match: A0A0E0JQ56_ORYPU (Uncharacterized protein OS=Oryza punctata PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3


Query: 246 PG*GKGEMGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 305
           P    GEMGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 101 PSRAAGEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 157

Query: 306  365
           
Sbjct: 161  157

Query: 366  417
           
Sbjct: 221  157

[Close]

BLAST of MU65909 vs. TrEMBL
Match: J3L559_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.4e-16
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 3


Query: 258 KGEMGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 317
           +GEMGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 59  QGEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 111

Query: 318  377
           
Sbjct: 119  111

Query: 378  417
           
Sbjct: 179  111

[Close]

BLAST of MU65909 vs. TrEMBL
Match: A0A0D9W0L9_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.2e-16
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 3


Query: 261 GEMGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 320
           GEMGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 11  GEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 62

Query: 321  380
           
Sbjct: 71   62

Query: 381  417
           
Sbjct: 131  62

[Close]

BLAST of MU65909 vs. TrEMBL
Match: A0A0E0C9E1_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.2e-16
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 3


Query: 261 GEMGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 320
           GEMGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 70  GEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 121

Query: 321  380
           
Sbjct: 130  121

Query: 381  417
           
Sbjct: 190  121

[Close]

BLAST of MU65909 vs. TrEMBL
Match: A0A0E0C9E3_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.2e-16
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 3


Query: 261 GEMGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 320
           GEMGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 5   GEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 56

Query: 321  380
           
Sbjct: 65   56

Query: 381  417
           
Sbjct: 125  56

[Close]

BLAST of MU65909 vs. TAIR10
Match: AT5G14670.1 (AT5G14670.1 ADP-ribosylation factor A1B)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-17
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 3


Query: 267 MGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 326
           MGL FT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 1   MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

Query: 327  386
           
Sbjct: 61   50

Query: 387  417
           
Sbjct: 121  50

[Close]

BLAST of MU65909 vs. TAIR10
Match: AT1G70490.1 (AT1G70490.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-17
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 3


Query: 267 MGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 326
           MGL+F  LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

Query: 327  386
           
Sbjct: 61   50

Query: 387  417
           
Sbjct: 121  50

[Close]

BLAST of MU65909 vs. TAIR10
Match: AT1G23490.1 (AT1G23490.1 ADP-ribosylation factor 1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-17
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 3


Query: 267 MGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 326
           MGL+F  LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

Query: 327  386
           
Sbjct: 61   50

Query: 387  417
           
Sbjct: 121  50

[Close]

BLAST of MU65909 vs. TAIR10
Match: AT1G10630.1 (AT1G10630.1 ADP-ribosylation factor A1F)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-17
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 3


Query: 267 MGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 326
           MGL+F  LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

Query: 327  386
           
Sbjct: 61   50

Query: 387  417
           
Sbjct: 121  50

[Close]

BLAST of MU65909 vs. TAIR10
Match: AT2G47170.1 (AT2G47170.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-17
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 3


Query: 267 MGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 326
           MGL+F  LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 1   MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50

Query: 327  386
           
Sbjct: 61   50

Query: 387  417
           
Sbjct: 121  50

[Close]

BLAST of MU65909 vs. NCBI nr
Match: gi|20161472|dbj|BAB90396.1| (ADP-ribosylation factor [Oryza sativa Japonica Group])

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 3


Query: 255 GKGEMGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 314
           G GEMGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 175 GDGEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 228

Query: 315  374
           
Sbjct: 235  228

Query: 375  417
           
Sbjct: 295  228

[Close]

BLAST of MU65909 vs. NCBI nr
Match: gi|960468742|ref|XP_010232477.2| (PREDICTED: ADP-ribosylation factor 2 [Brachypodium distachyon])

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 3


Query: 261 GEMGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 320
           GEMGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 75  GEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 126

Query: 321  380
           
Sbjct: 135  126

Query: 381  417
           
Sbjct: 195  126

[Close]

BLAST of MU65909 vs. NCBI nr
Match: gi|475592749|gb|EMT22177.1| (ADP-ribosylation factor [Aegilops tauschii])

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 3


Query: 255 GKGEMGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 314
           G  EMGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 20  GGDEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 73

Query: 315  374
           
Sbjct: 80   73

Query: 375  417
           
Sbjct: 140  73

[Close]

BLAST of MU65909 vs. NCBI nr
Match: gi|697151091|ref|XP_009629758.1| (PREDICTED: ADP-ribosylation factor 2 isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 3


Query: 264 EMGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 323
           EMGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 63  EMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 113

Query: 324  383
           
Sbjct: 123  113

Query: 384  417
           
Sbjct: 183  113

[Close]

BLAST of MU65909 vs. NCBI nr
Match: gi|1002855389|ref|XP_015692748.1| (PREDICTED: ADP-ribosylation factor 2 isoform X1 [Oryza brachyantha])

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 3


Query: 264 EMGLTFTNLFNRLFAKKEMQILMVGLDAAEKTTILYKLKLGEIVTTIPTMG 323
           EMGLTFT LF+RLFAKKEM+ILMVGLDAA KTTILYKLKLGEIVTTIPT+G
Sbjct: 60  EMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 110

Query: 324  383
           
Sbjct: 120  110

Query: 384  417
           
Sbjct: 180  110

The following BLAST results are available for this feature:

BLAST of MU65909 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARF2_ORYSJ	5.3e-17	90.00	ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2	[more]
ARF_MAIZE	5.3e-17	90.00	ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2	[more]
ARF1_ORYSJ	5.3e-17	90.00	ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 S...	[more]
ARF_VIGUN	1.6e-16	88.00	ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3	[more]
ARF1_DAUCA	1.6e-16	88.00	ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2	[more]

BLAST of MU65909 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0E0JQ56_ORYPU	1.9e-16	84.21	Uncharacterized protein OS=Oryza punctata PE=3 SV=1	[more]
J3L559_ORYBR	2.4e-16	88.68	Uncharacterized protein OS=Oryza brachyantha PE=3 SV=1	[more]
A0A0D9W0L9_9ORYZ	3.2e-16	90.38	Uncharacterized protein OS=Leersia perrieri PE=3 SV=1	[more]
A0A0E0C9E1_9ORYZ	3.2e-16	90.38	Uncharacterized protein OS=Oryza meridionalis PE=3 SV=1	[more]
A0A0E0C9E3_9ORYZ	3.2e-16	90.38	Uncharacterized protein OS=Oryza meridionalis PE=3 SV=1	[more]

BLAST of MU65909 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14670.1	1.1e-17	88.00	ADP-ribosylation factor A1B	[more]
AT1G70490.1	3.3e-17	86.00	Ras-related small GTP-binding family protein	[more]
AT1G23490.1	3.3e-17	86.00	ADP-ribosylation factor 1	[more]
AT1G10630.1	3.3e-17	86.00	ADP-ribosylation factor A1F	[more]
AT2G47170.1	5.7e-17	86.00	Ras-related small GTP-binding family protein	[more]

BLAST of MU65909 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|20161472\|dbj\|BAB90396.1\|	1.2e-16	88.89	ADP-ribosylation factor [Oryza sativa Japonica Group]	[more]
gi\|960468742\|ref\|XP_010232477.2\|	3.5e-16	90.38	PREDICTED: ADP-ribosylation factor 2 [Brachypodium distachyon]	[more]
gi\|475592749\|gb\|EMT22177.1\|	1.0e-15	87.04	ADP-ribosylation factor [Aegilops tauschii]	[more]
gi\|697151091\|ref\|XP_009629758.1\|	1.7e-15	90.20	PREDICTED: ADP-ribosylation factor 2 isoform X1 [Nicotiana tomentosiformis]	[more]
gi\|1002855389\|ref\|XP_015692748.1\|	1.7e-15	90.20	PREDICTED: ADP-ribosylation factor 2 isoform X1 [Oryza brachyantha]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006689	Small_GTPase_ARF/SAR
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005525	GTP binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C026141	MELO3C026141	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
TEa0005I20	TEa0005I20	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006689	Small GTPase superfamily, ARF/SAR type	PFAM	PF00025	Arf	coord: 6..50 score: 1.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 1..50 score: 1.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 4..50 score: 7.5
None	No IPR available	PANTHER	PTHR11711	ADP RIBOSYLATION FACTOR-RELATED	coord: 1..50 score: 5.5
None	No IPR available	PANTHER	PTHR11711:SF181	ADP-RIBOSYLATION FACTOR A1F	coord: 1..50 score: 5.5