MU65154 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU65154
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Unknown protein
Location	chr11 : 3670463 .. 3671202 (-)
Sequence length	758

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACAAATGTCACTTCTCGAACAGTTTGCGACGTAGGTTTTACAGTAAAGCTCATTCTAAACACCAATGTGTTAATGGAGGAGAGGATGGAAAGAAGAAAAGGGTCGTCGTCGTTGGCTCCGGTTGGGCTGGCCTTGCCGCTGCTAATCACCTCTGCAATCAGGTTCTTTTTGAAGAACAGTTGCAAAGGAACATAGGAAAGGGAGAGGAAGAATAATAAATTAGTATAGCAGTCCATATTAACTTCCTAGCTCTCTGAGTCTCTACCTTGGTGCCAGTGTCAGTTTAACTGGTGAAATTTAGCTTCATCAATCAGTATAAGATTTTGGATCGGTGATTTAGCATGTTATTAATGGAAGACCTGTATTGTTATTCTCTCCTATTAATATTGATGGTTTAATTTAACATGGTACAAGAGGACATCCGCGAATTTAGTATAGGTCTAAGATCCAGCTCTCAACTTTATCATCTTTACATAATATATAAAAATATTATTTAGTTATGCGTTTGTCAGCCCTTTTCAACCCAGATTCAAGTATCAAATATTCTGCATTCGCCACTGAGAGAGGGAGTGTTATTAAAGTTCACTCGTCAGCTTTAAGTTTTGTAGTCGGTCGTTGATTTAACGTAGTACCGAAGCGATTTAACATTTTATGAAAGCAAGAAGTACAACTCCTATTATTTTATCTTCGACCGATGTTGATTCAATCGGTGGTTTAATAATTTTGGGTCAATAAGGGATTTAACAATATTTTTCATG

Library


Library category	ESTs
melon PSI library	1

Homology

[Close]

BLAST of MU65154 vs. TrEMBL
Match: A0A0A0LLQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271410 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-06
Identity = 30/53 (56.60%), Postives = 31/53 (58.49%), Query Frame = 3


Query: 3   KCHFSNSLRRRFYSKAHSKHQCVNXXXXXXXXXXXXXXXXWAGLAAANHLCNQ 62
           K HFSNSLR  FY KA+SKH C N                WAGLAAANHLCNQ
Sbjct: 17  KPHFSNSLRTGFYIKAYSKHLCFNGGEDGKKKRVVVVGSGWAGLAAANHLCNQ 69

Query: 63   122
           
Sbjct: 77   69

Query: 123  162
           
Sbjct: 137  69

[Close]

BLAST of MU65154 vs. NCBI nr
Match: gi|659115767|ref|XP_008457726.1| (PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-10
Identity = 35/53 (66.04%), Postives = 35/53 (66.04%), Query Frame = 3


Query: 3   KCHFSNSLRRRFYSKAHSKHQCVNXXXXXXXXXXXXXXXXWAGLAAANHLCNQ 62
           KCHFSNSLRR FYSKAHSKH CVN                WAGLAAANHLCNQ
Sbjct: 18  KCHFSNSLRRGFYSKAHSKHLCVNGGEDGKKKRVVVVGSGWAGLAAANHLCNQ 70

Query: 63   122
           
Sbjct: 78   70

Query: 123  162
           
Sbjct: 138  70

[Close]

BLAST of MU65154 vs. NCBI nr
Match: gi|449458684|ref|XP_004147077.1| (PREDICTED: zeta-carotene desaturase, chloroplastic/chromoplastic-like [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 8.5e-06
Identity = 30/53 (56.60%), Postives = 31/53 (58.49%), Query Frame = 3


Query: 3   KCHFSNSLRRRFYSKAHSKHQCVNXXXXXXXXXXXXXXXXWAGLAAANHLCNQ 62
           K HFSNSLR  FY KA+SKH C N                WAGLAAANHLCNQ
Sbjct: 17  KPHFSNSLRTGFYIKAYSKHLCFNGGEDGKKKRVVVVGSGWAGLAAANHLCNQ 69

Query: 63   122
           
Sbjct: 77   69

Query: 123  162
           
Sbjct: 137  69

[Close]

BLAST of MU65154 vs. NCBI nr
Match: gi|659115769|ref|XP_008457727.1| (PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 8.5e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1


Query: 73  MEERMERRKGSSSLAPVGLALPLLITSAIR 132
           MEERMERRKGSSSLAPVGLALPLLITSAIR
Sbjct: 1   MEERMERRKGSSSLAPVGLALPLLITSAIR 30

Query: 133  163
           
Sbjct: 61   30

The following BLAST results are available for this feature:

BLAST of MU65154 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLQ3_CUCSA	2.7e-06	56.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271410 PE=4 SV=1	[more]

BLAST of MU65154 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115767\|ref\|XP_008457726.1\|	7.4e-10	66.04	PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic-like isoform X1 [...	[more]
gi\|449458684\|ref\|XP_004147077.1\|	8.5e-06	56.60	PREDICTED: zeta-carotene desaturase, chloroplastic/chromoplastic-like [Cucumis s...	[more]
gi\|659115769\|ref\|XP_008457727.1\|	8.5e-06	100.00	PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic-like isoform X2 [...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR023753	FAD/NAD-binding_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C020832	MELO3C020832	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
PSI22F11	PSI22F11	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023753	FAD/NAD(P)-binding domain	GENE3D	G3DSA:3.50.50.60		coord: 20..53 score: 3.
IPR023753	FAD/NAD(P)-binding domain	unknown	SSF51905	FAD/NAD(P)-binding domain	coord: 17..51 score: 7.3