MU61009 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU61009
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Unplaced genomic scaffold supercont1.82, whole genome shotgun sequence
Location	chr7 : 447670 .. 449161 (-)
Sequence length	614

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GATCCTTTCTGCAGTCGGATTTTGGTGATCAATTGAAAGTGTAGAGGGCAATTATGGGAGGCGGTGGACATGGAGCTGGAACTACTTACAAGGGCGTGACCATACACCCACCAAAGCGATGGCACACCGTCACCGGCAAGGGGCTGTGCGCCATTATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGGCTGGAGACATCCATGGGAAGGCCATGGTCATGGTGACCATGGTGACCATGGGCATGGGCACTAGAGAAAAAAAAGTCAAAACAAAGTGTGTCCTAGCATTCTGATATAATTACAACACTGAACTATTAGCTATTTGACATCAGTTTACTTGTAGTGGCTCGATGCTAATGGTGGGCGAAGGGGAAATGGCAAGGCCTCAGTTGCAGGTTATCTATTTGAACGTTAAGAGTACCATATTTGCTAAGTTCTTTTCAAATAAGGATATTGTGATAGCCAAATGGATATAAACATCACTTCATCATTTTTATTTTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTAATTTGTGTTCAATCACAGCTGTGGTTGAGTTGAAGCAAAGATCAATGCGCTATTTCTG

Library


Library category	ESTs
melon VFLP2 library	1

Homology

[Close]

BLAST of MU61009 vs. Swiss-Prot
Match: NDUB2_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana GN=At1g76200 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-22
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 3


Query: 84  TYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 143
           TYKGVT+H PK WHTVTGKGLCA+MWFW+LYRAKQDGPVV+GWRHPW+
Sbjct: 11  TYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWD 58

Query: 144  203
           
Sbjct: 71   58

Query: 204  228
           
Sbjct: 131  58

[Close]

BLAST of MU61009 vs. TrEMBL
Match: A0A0A0L0L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653460 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.3e-23
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 3


Query: 81  TTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 140
           TT+KGVTIHPPKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWE
Sbjct: 10  TTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWE 58

Query: 141  200
           
Sbjct: 70   58

Query: 201  228
           
Sbjct: 130  58

[Close]

BLAST of MU61009 vs. TrEMBL
Match: A0A151RAS0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_039011 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 3


Query: 81  TTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 140
           TTYKGVTIH PKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWE
Sbjct: 10  TTYKGVTIHHPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWE 58

Query: 141  200
           
Sbjct: 70   58

Query: 201  228
           
Sbjct: 130  58

[Close]

BLAST of MU61009 vs. TrEMBL
Match: A0A0L9V7N9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g190300 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 3


Query: 81  TTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 140
           TTYKGVTIH PKRWHT+TGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWE
Sbjct: 8   TTYKGVTIHQPKRWHTITGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWE 56

Query: 141  200
           
Sbjct: 68   56

Query: 201  228
           
Sbjct: 128  56

[Close]

BLAST of MU61009 vs. TrEMBL
Match: A0A061FE98_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_034349 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-22
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 3


Query: 81  TTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 140
           TTYKGVT+H PKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE
Sbjct: 9   TTYKGVTLHHPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 57

Query: 141  200
           
Sbjct: 69   57

Query: 201  228
           
Sbjct: 129  57

[Close]

BLAST of MU61009 vs. TrEMBL
Match: I1LPI3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G025500 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.8e-22
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 3


Query: 81  TTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 140
           TTYKGVTIH PKRWHT+TGKGLCA+MWFWV YRAKQDGPVVLGWRHPWE
Sbjct: 9   TTYKGVTIHQPKRWHTITGKGLCAVMWFWVFYRAKQDGPVVLGWRHPWE 57

Query: 141  200
           
Sbjct: 69   57

Query: 201  228
           
Sbjct: 129  57

[Close]

BLAST of MU61009 vs. TAIR10
Match: AT1G76200.1 (AT1G76200.1 unknown protein)

HSP 1 Score: 107.8 bits (268), Expect = 7.8e-24
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 3


Query: 84  TYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 143
           TYKGVT+H PK WHTVTGKGLCA+MWFW+LYRAKQDGPVV+GWRHPW+
Sbjct: 11  TYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWD 58

Query: 144  203
           
Sbjct: 71   58

Query: 204  228
           
Sbjct: 131  58

[Close]

BLAST of MU61009 vs. NCBI nr
Match: gi|659104403|ref|XP_008452937.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 119.4 bits (298), Expect = 7.3e-24
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 3


Query: 81  TTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 140
           TTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE
Sbjct: 10  TTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 58

Query: 141  200
           
Sbjct: 70   58

Query: 201  228
           
Sbjct: 130  58

[Close]

BLAST of MU61009 vs. NCBI nr
Match: gi|449455585|ref|XP_004145533.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 117.5 bits (293), Expect = 2.8e-23
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 3


Query: 81  TTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 140
           TT+KGVTIHPPKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWE
Sbjct: 10  TTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWE 58

Query: 141  200
           
Sbjct: 70   58

Query: 201  228
           
Sbjct: 130  58

[Close]

BLAST of MU61009 vs. NCBI nr
Match: gi|1012327980|gb|KYP39652.1| (hypothetical protein KK1_039011 [Cajanus cajan])

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 3


Query: 81  TTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 140
           TTYKGVTIH PKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWE
Sbjct: 10  TTYKGVTIHHPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWE 58

Query: 141  200
           
Sbjct: 70   58

Query: 201  228
           
Sbjct: 130  58

[Close]

BLAST of MU61009 vs. NCBI nr
Match: gi|950940154|ref|XP_014492516.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 3


Query: 81  TTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 140
           TTYKGVTIH PKRWHT+TGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWE
Sbjct: 8   TTYKGVTIHQPKRWHTITGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWE 56

Query: 141  200
           
Sbjct: 68   56

Query: 201  228
           
Sbjct: 128  56

[Close]

BLAST of MU61009 vs. NCBI nr
Match: gi|590594905|ref|XP_007017978.1| (Uncharacterized protein TCM_034349 [Theobroma cacao])

HSP 1 Score: 115.2 bits (287), Expect = 1.4e-22
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 3


Query: 81  TTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 140
           TTYKGVT+H PKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE
Sbjct: 9   TTYKGVTLHHPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWE 57

Query: 141  200
           
Sbjct: 69   57

Query: 201  228
           
Sbjct: 129  57

The following BLAST results are available for this feature:

BLAST of MU61009 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUB2_ARATH	1.4e-22	85.42	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thali...	[more]

BLAST of MU61009 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0L4_CUCSA	4.3e-23	95.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653460 PE=4 SV=1	[more]
A0A151RAS0_CAJCA	1.6e-22	95.92	Uncharacterized protein OS=Cajanus cajan GN=KK1_039011 PE=4 SV=1	[more]
A0A0L9V7N9_PHAAN	1.6e-22	93.88	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g190300 PE=4 SV=1	[more]
A0A061FE98_THECC	2.1e-22	95.92	Uncharacterized protein OS=Theobroma cacao GN=TCM_034349 PE=4 SV=1	[more]
I1LPI3_SOYBN	4.8e-22	91.84	Uncharacterized protein OS=Glycine max GN=GLYMA_12G025500 PE=4 SV=1	[more]

BLAST of MU61009 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76200.1	7.8e-24	85.42	unknown protein	[more]

BLAST of MU61009 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104403\|ref\|XP_008452937.1\|	7.3e-24	100.00	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|449455585\|ref\|XP_004145533.1\|	2.8e-23	95.92	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|1012327980\|gb\|KYP39652.1\|	1.1e-22	95.92	hypothetical protein KK1_039011 [Cajanus cajan]	[more]
gi\|950940154\|ref\|XP_014492516.1\|	1.1e-22	93.88	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|590594905\|ref\|XP_007017978.1\|	1.4e-22	95.92	Uncharacterized protein TCM_034349 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR026627	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2

Vocabulary: **Cellular Component**
Term	Definition
GO:0005743	mitochondrial inner membrane
GO:0005747	mitochondrial respiratory chain complex I

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005747	mitochondrial respiratory chain complex I

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C017010	MELO3C017010	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
GA33YA06FM1	GA33YA06FM1	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026627	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2	PANTHER	PTHR15223	NADH-UBIQUINONE OXIDOREDUCTASE AGGG SUBUNIT	coord: 3..68 score: 2.8