MU57895 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU57895
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	AP2/B3-like transcriptional factor family protein
Location	chr6 : 1778185 .. 1781184 (-)
Sequence length	795

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAGAATGAATGATCTGAAGAAAATACGGCGACTGATTGTCTCGCCATCTGCTTCCTTCGAGCCCAAAGGCTTCTGTAAGTGATTTGTACTGAAAAACGGTCCGCAGATGCAGTCAGAAAGGAATCCTCCGACAGAGCTTCCAACAATAGAGCCGCAAAATGGAGAAACTATGCCCCTTTCAGGCAAACCCTACCATGCTTTTATTCTTTCTAAATCGCATGTTGCTCCCATATATAATTTGGTTTTGCCGGCTAAATTTCATTCTATTTTACCTGCTATTGTCATCCCTGCGGTTCTTTTATGTCGAGGCAAGAAATGGAAGATAGATTATTATGGAAACAGACGTGGTAAGGCACTCGATTCAAAACAGTGGAGGAAATTTGTTAATGATAATTGTCTCAAATCCGGAGATGCTTGTGTATTTGAGCTCTTGGAGTGCAGCAGCAGCATACTTAAATTTAGAGTTCAAATTCTCCGTGGTGACATACCTTTGGAGCTGCACGACAAGTTCAGTGGGGAGACAAAAGAGACCCCCATACACCTTGACTAGCTTCCCTTTGTGTGGTTTCGTAGTTTTCAAAAGTCCCGACTTGTCGACATCATATTGCGGTTCTAGAATCAGACAGCCTATTTGATATTTATGTAGTTCAACCAAGATGGTTTTGGTGCTGCAATGAAGTTGTGCTTCCTCGTGAGACGTGCAATGCATTATGTTACTTGTGTTCTTATGCCAAATGCACCAGGTTATATGGTTAATATGTAGATCCATTTTTTATTGTCATGGCCGACACATCT

Library


Library category	ESTs
melon MNR09P2 library	1

Homology

[Close]

BLAST of MU57895 vs. Swiss-Prot
Match: Y4869_ORYSJ (B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os04g0386900 PE=2 SV=3)

HSP 1 Score: 102.4 bits (254), Expect = 7.5e-21
Identity = 58/144 (40.28%), Postives = 79/144 (54.86%), Query Frame = 2


Query: 125 PPTELPTIEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVIPAVLLC 184
           PP   P    ++G  +PL GKPY   I+ KSHV P + +V+P  F  +LP+   PA L  
Sbjct: 71  PPEPEPEKVARHG-VLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTPATLSW 130

Query: 185 RGKKWKIDYYGNRRGKALDSKQWRKFVNDNCLKSGDACVFELL---ECSSSILKFRVQIL 244
           RG+ W + + G R  + L++  WR F  DN L+ GD CVFELL         ++FRVQ+L
Sbjct: 131 RGRSWGMRFTGGRLIQRLEA-GWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEFRVQVL 190

Query: 245 RGDIPLELHDKFSGETKETPIHLD 304
           R +IP  +  +  G T  TPI +D
Sbjct: 191 RAEIPARIRGRAGGYTSATPIVID 212

Query: 305  364
           
Sbjct: 251  212

Query: 365  424
           
Sbjct: 311  212

Query: 425  484
           
Sbjct: 371  212

Query: 485  544
           
Sbjct: 431  212

Query: 545  548
           
Sbjct: 491  212

[Close]

BLAST of MU57895 vs. Swiss-Prot
Match: Y6112_ORYSJ (B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica GN=Os06g0112300 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.8e-14
Identity = 52/141 (36.88%), Postives = 73/141 (51.77%), Query Frame = 2


Query: 125 PPTELPTIEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSIL--PAIVIPAVL 184
           PP    + E     T   +G P+   +++KSH+ P + + +P +F   L  P     AVL
Sbjct: 33  PPPASGSGEDWEATTPLAAGNPFFTALIAKSHLHPKFQMWIPPRFQHRLAEPEARTAAVL 92

Query: 185 LCRGKKWKIDYYGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLEC-SSSILKFRVQIL 244
              GK W   Y G+ + K LD+  W +F  DN L  GDACVFEL+   ++  L+F+VQIL
Sbjct: 93  HSGGKSWATSYCGHLKMKKLDAG-WSEFAVDNRLLVGDACVFELVAMGAAGGLEFQVQIL 152

Query: 245 RGDIPLELHDKFSGETKETPI 304
           RG +P E+     G T + PI
Sbjct: 153 RGGLPAEVVTS-KGLTSDQPI 171

Query: 305  364
           
Sbjct: 213  171

Query: 365  424
           
Sbjct: 273  171

Query: 425  484
           
Sbjct: 333  171

Query: 485  539
           
Sbjct: 393  171

[Close]

BLAST of MU57895 vs. TrEMBL
Match: A0A0A0L3V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126890 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 4.4e-76
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 2


Query: 107 MQSERNPPTELPTIEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI 166
           MQS R PPTELPT+EPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI
Sbjct: 1   MQSARKPPTELPTMEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI 60

Query: 167 PAVLLCRGKKWKIDYYGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLECSSSILKFRV 226
           PAVLLCRGKKWKIDY+GNRRGKALDSKQWRKFVNDNCLKSGDA VFELLECSSSILKFRV
Sbjct: 61  PAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRV 120

Query: 227 QILRGDIPLELHDKFSGETKETPIHLD 286
           QIL GDIPLELHDKFSGETKETPIHLD
Sbjct: 121 QILSGDIPLELHDKFSGETKETPIHLD 147

Query: 287  346
           
Sbjct: 181  147

Query: 347  406
           
Sbjct: 241  147

Query: 407  466
           
Sbjct: 301  147

Query: 467  526
           
Sbjct: 361  147

Query: 527  548
           
Sbjct: 421  147

[Close]

BLAST of MU57895 vs. TrEMBL
Match: M5X861_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025386mg PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.2e-30
Identity = 74/149 (49.66%), Postives = 96/149 (64.43%), Query Frame = 2


Query: 101 PQMQSERNPPTELPTIEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAI 160
           PQM+   +  T  P IE +  E  PLSGKP+   +L+K+ + P+  LV+P KF + LP+ 
Sbjct: 6   PQME---DLSTSNPVIELEGDEFWPLSGKPFFDVVLTKTSIKPMCQLVVPGKFSATLPSC 65

Query: 161 VIPAVLLCRGKKWKIDYYGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLECSSSILKF 220
            IP VL  RGK W++ Y+G+   K LD+  W+ F  DN LK GDACVFE LECSS+ L F
Sbjct: 66  SIPTVLTFRGKNWEMTYHGSSNYKRLDN--WKAFAIDNNLKVGDACVFEQLECSSTRLVF 125

Query: 221 RVQILRGDIPLELHDKFSGETKETPIHLD 280
           RVQILRGDIP E  DK  G+  + PI L+
Sbjct: 126 RVQILRGDIPSEFLDKLDGDNVDAPIVLE 149

Query: 281  340
           
Sbjct: 186  149

Query: 341  400
           
Sbjct: 246  149

Query: 401  460
           
Sbjct: 306  149

Query: 461  520
           
Sbjct: 366  149

Query: 521  548
           
Sbjct: 426  149

[Close]

BLAST of MU57895 vs. TrEMBL
Match: M5X1G4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012926mg PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 71/139 (51.08%), Postives = 92/139 (66.19%), Query Frame = 2


Query: 131 TELPTIEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVIPAVLLCRG 190
           T  P IE +  E  PLSGKP+   +L+K+++  +Y LV+P KF + LP+  IP VL+ RG
Sbjct: 12  TSNPVIELEGDEFWPLSGKPFFDVVLTKTNIKRLYQLVVPGKFSATLPSCSIPTVLIFRG 71

Query: 191 KKWKIDYYGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLECSSSILKFRVQILRGDIP 250
           K W++ Y+G+   K LD+  WR F  DN LK GDACVFE LECSS+ L FRVQILRGDI 
Sbjct: 72  KNWEMIYHGSSSHKRLDN--WRAFAVDNNLKVGDACVFEQLECSSTRLVFRVQILRGDIS 131

Query: 251 LELHDKFSGETKETPIHLD 310
            E  DK  G+  + PI L+
Sbjct: 132 SEFLDKLGGDNVDAPIVLE 148

Query: 311  370
           
Sbjct: 192  148

Query: 371  430
           
Sbjct: 252  148

Query: 431  490
           
Sbjct: 312  148

Query: 491  548
           
Sbjct: 372  148

[Close]

BLAST of MU57895 vs. TrEMBL
Match: M5XNL5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020952mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.3e-29
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 2


Query: 128 PTELPTIEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVIPAVLLCR 187
           PT  P IE +  E  PLSGKP+   +L+K+ + P+Y LV+P KF++ LP+  I  VL  R
Sbjct: 14  PTSNPVIELEGDEFWPLSGKPFFDVVLTKTTIKPMYQLVVPGKFNATLPSCSIHTVLAFR 73

Query: 188 GKKWKIDYYGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLECSSSILKFRVQILRGDI 247
           GK W+I Y+ +   K LD+  WR F  DN LK G ACVFE LECSS+ L FRVQILRGDI
Sbjct: 74  GKNWEIIYHESSSCKRLDN--WRPFAIDNNLKVGGACVFEQLECSSTRLVFRVQILRGDI 133

Query: 248 PLELHDKFSGETKETPIHLD 307
           P E  DK +G+  + PI L+
Sbjct: 134 PSEFLDKLNGDNVDAPIVLE 151

Query: 308  367
           
Sbjct: 194  151

Query: 368  427
           
Sbjct: 254  151

Query: 428  487
           
Sbjct: 314  151

Query: 488  547
           
Sbjct: 374  151

[Close]

BLAST of MU57895 vs. TrEMBL
Match: A5AIM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020729 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-28
Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 2


Query: 104 QMQSERNPPTELPTIEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIV 163
           +M+      +E P  + Q  E  PL GKPY   +L KSH   +  +VLP K H  +P+ V
Sbjct: 16  KMEESGGQTSEEPATKFQADEIHPLLGKPYFHVVLVKSH---LNQMVLPTKMHPSVPSAV 75

Query: 164 IPAVLLCRGKKWKIDYYGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLECSSSILKFR 223
           IPAVL+ + K+W++ + G+ R        WR FVNDN LK+GDACVFEL+EC++S +KFR
Sbjct: 76  IPAVLVHQXKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACVFELMECNTSNIKFR 135

Query: 224 VQILRGDIPLELHDKFSGETKETPIHLD 283
           VQILRGDIP  L D+ +GET +T I ++
Sbjct: 136 VQILRGDIPSMLLDRANGETSDTAIVIE 160

Query: 284  343
           
Sbjct: 196  160

Query: 344  403
           
Sbjct: 256  160

Query: 404  463
           
Sbjct: 316  160

Query: 464  523
           
Sbjct: 376  160

Query: 524  548
           
Sbjct: 436  160

[Close]

BLAST of MU57895 vs. NCBI nr
Match: gi|778677528|ref|XP_011650806.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 2.8e-76
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 2


Query: 107 MQSERNPPTELPTIEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI 166
           MQS R PPTELPT+EPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI
Sbjct: 1   MQSARKPPTELPTMEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI 60

Query: 167 PAVLLCRGKKWKIDYYGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLECSSSILKFRV 226
           PAVLLCRGKKWKIDY+GNRRGKALDSKQWRKFVNDNCLKSGDA VFELLECSSSILKFRV
Sbjct: 61  PAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRV 120

Query: 227 QILRGDIPLELHDKFSGETKETPIHLD 286
           QIL GDIPLELHDKFSGETKETPIHLD
Sbjct: 121 QILSGDIPLELHDKFSGETKETPIHLD 147

Query: 287  346
           
Sbjct: 181  147

Query: 347  406
           
Sbjct: 241  147

Query: 407  466
           
Sbjct: 301  147

Query: 467  526
           
Sbjct: 361  147

Query: 527  548
           
Sbjct: 421  147

[Close]

BLAST of MU57895 vs. NCBI nr
Match: gi|694428103|ref|XP_009341640.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 142.9 bits (359), Expect = 8.0e-31
Identity = 74/140 (52.86%), Postives = 91/140 (65.00%), Query Frame = 2


Query: 128 PTELPTIEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVIPAVLLCR 187
           PT    IE Q  E  PLS KP+   +++K++V P Y +V+PAKF   LP+  IP VL   
Sbjct: 5   PTSNSMIELQGDEFWPLSEKPFFEVVITKANVKPSYQMVIPAKFQQTLPSCSIPTVLTFG 64

Query: 188 GKKWKIDYYGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLECSSSILKFRVQILRGDI 247
           GK W++ Y      +  D+  WR+FVNDN LK GDACVFELLECSS+ L FRVQILRGDI
Sbjct: 65  GKNWEMTYTHGSGQRKFDTN-WREFVNDNNLKVGDACVFELLECSSTKLVFRVQILRGDI 124

Query: 248 PLELHDKFSGETKETPIHLD 307
           P EL  K  GET + PI +D
Sbjct: 125 PSELLGKLKGETVDAPIIID 143

Query: 308  367
           
Sbjct: 185  143

Query: 368  427
           
Sbjct: 245  143

Query: 428  487
           
Sbjct: 305  143

Query: 488  547
           
Sbjct: 365  143

[Close]

BLAST of MU57895 vs. NCBI nr
Match: gi|657949831|ref|XP_008345126.1| (PREDICTED: B3 domain-containing protein Os06g0112300-like [Malus domestica])

HSP 1 Score: 142.5 bits (358), Expect = 1.0e-30
Identity = 74/140 (52.86%), Postives = 92/140 (65.71%), Query Frame = 2


Query: 128 PTELPTIEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVIPAVLLCR 187
           PT  P IE Q  E  PLS KP+   +++K++V P Y +V+PAKF   LP+  I  VL+  
Sbjct: 5   PTSNPPIELQGDEFWPLSEKPFFEVVIAKANVKPSYQMVIPAKFQQTLPSCSIHTVLMFG 64

Query: 188 GKKWKIDYYGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLECSSSILKFRVQILRGDI 247
           GK W++ Y      +  D+  WR+FVNDN LK GDACVFELLECSS+ L FRVQILRGDI
Sbjct: 65  GKNWEMTYTCGSGQRKFDTN-WREFVNDNNLKVGDACVFELLECSSTKLIFRVQILRGDI 124

Query: 248 PLELHDKFSGETKETPIHLD 307
           P EL  K  GET + PI +D
Sbjct: 125 PSELLRKLKGETVDAPIIID 143

Query: 308  367
           
Sbjct: 185  143

Query: 368  427
           
Sbjct: 245  143

Query: 428  487
           
Sbjct: 305  143

Query: 488  547
           
Sbjct: 365  143

[Close]

BLAST of MU57895 vs. NCBI nr
Match: gi|645252559|ref|XP_008232177.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like [Prunus mume])

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 71/139 (51.08%), Postives = 93/139 (66.91%), Query Frame = 2


Query: 131 TELPTIEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVIPAVLLCRG 190
           T  P IE +  E  PLSGKP+   +L+K+++  +Y LV+P KF + LP+  +P VL  RG
Sbjct: 6   TSNPVIELEGDEFWPLSGKPFFDVVLTKTNINHLYQLVVPGKFSATLPSCSMPTVLTFRG 65

Query: 191 KKWKIDYYGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLECSSSILKFRVQILRGDIP 250
           K W++ Y+G+   K LD+  W+ FV DN LK GDACVFE LECSS+ L FRVQILRGDIP
Sbjct: 66  KNWEMIYHGSSSHKRLDN--WKAFVIDNNLKVGDACVFEQLECSSTRLVFRVQILRGDIP 125

Query: 251 LELHDKFSGETKETPIHLD 310
            E  DK  G+  + PI L+
Sbjct: 126 SEFLDKLDGDNVDAPIVLE 142

Query: 311  370
           
Sbjct: 186  142

Query: 371  430
           
Sbjct: 246  142

Query: 431  490
           
Sbjct: 306  142

Query: 491  548
           
Sbjct: 366  142

[Close]

BLAST of MU57895 vs. NCBI nr
Match: gi|470135893|ref|XP_004303740.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 140.6 bits (353), Expect = 4.0e-30
Identity = 71/133 (53.38%), Postives = 88/133 (66.17%), Query Frame = 2


Query: 146 IEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVIPAVLLCRGKKWKI 205
           I+    E  PLSGKP+   IL+KSHV P Y L +PAK HSILP   IP VL   GK W++
Sbjct: 13  IQLHGEEFWPLSGKPFFDIILAKSHVKPSYMLGIPAKLHSILPPCSIPTVLNFAGKSWEM 72

Query: 206 DYYGNRRGKALDSKQWRKFVNDNCLKSGDACVFELLECSSSILKFRVQILRGDIPLELHD 265
              G  R   LD + W+ FV+DN LK+GD CVFE++ECS++ L+ RVQILRGDIP EL +
Sbjct: 73  TCGGKHRKHKLDKESWKAFVDDNKLKAGDGCVFEVMECSTTKLELRVQILRGDIPAELLE 132

Query: 266 KFSGETKETPIHL 325
           K  G+  E PI L
Sbjct: 133 KERGDEAEKPIVL 145

Query: 326  385
           
Sbjct: 193  145

Query: 386  445
           
Sbjct: 253  145

Query: 446  505
           
Sbjct: 313  145

Query: 506  545
           
Sbjct: 373  145

The following BLAST results are available for this feature:

BLAST of MU57895 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4869_ORYSJ	7.5e-21	40.28	B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os0...	[more]
Y6112_ORYSJ	6.8e-14	36.88	B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica GN=Os0...	[more]

BLAST of MU57895 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3V3_CUCSA	4.4e-76	95.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126890 PE=4 SV=1	[more]
M5X861_PRUPE	6.2e-30	49.66	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025386mg PE=4 S...	[more]
M5X1G4_PRUPE	1.4e-29	51.08	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012926mg PE=4 SV=1	[more]
M5XNL5_PRUPE	2.3e-29	51.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020952mg PE=4 SV=1	[more]
A5AIM5_VITVI	2.0e-28	47.30	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020729 PE=4 SV=1	[more]

BLAST of MU57895 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778677528\|ref\|XP_011650806.1\|	2.8e-76	95.92	PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus]	[more]
gi\|694428103\|ref\|XP_009341640.1\|	8.0e-31	52.86	PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2 [Pyrus x br...	[more]
gi\|657949831\|ref\|XP_008345126.1\|	1.0e-30	52.86	PREDICTED: B3 domain-containing protein Os06g0112300-like [Malus domestica]	[more]
gi\|645252559\|ref\|XP_008232177.1\|	3.0e-30	51.08	PREDICTED: B3 domain-containing protein Os04g0386900-like [Prunus mume]	[more]
gi\|470135893\|ref\|XP_004303740.1\|	4.0e-30	53.38	PREDICTED: B3 domain-containing protein Os04g0386900-like [Fragaria vesca subsp....	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003340	B3_DNA-bd
IPR015300	DNA-bd_pseudobarrel_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006216	MELO3C006216	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
CA21YJ16FM1	CA21YJ16FM1	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 35..124 score: 3.6
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 34..126 score: 4.
IPR003340	B3 DNA binding domain	PROFILE	PS50863	B3	coord: 30..126 score: 1
IPR015300	DNA-binding pseudobarrel domain	GENE3D	G3DSA:2.40.330.10		coord: 26..124 score: 1.3
IPR015300	DNA-binding pseudobarrel domain	unknown	SSF101936	DNA-binding pseudobarrel domain	coord: 26..124 score: 1.2
None	No IPR available	PANTHER	PTHR31391	FAMILY NOT NAMED	coord: 17..144 score: 2.5
None	No IPR available	PANTHER	PTHR31391:SF15	SUBFAMILY NOT NAMED	coord: 17..144 score: 2.5