MU56419 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU56419
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	E3 ubiquitin-protein ligase
Location	chr11 : 18186362 .. 18188570 (-)
Sequence length	788

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCTCTTCAAATTCATATTCCTTCTTCTTCCTCCTCTCTCAACCAACCTTCTTAACTCACACGCACATACTAATCCGCCGATTAAGTTTCGCTTGAGGCATTATAGAAAGAAGACTGCAGAAACATAAACCTGGCCATGGAACAGCAGTACCTTGAAGAGGCTTTGATGCCAAACGACAATTCATTAGGAGGAGACAAATTACGTTTAGACATCCAAACATATATTTCAGATGCTGAAGATGAAGCTTCCCATGGCTTTGACTGCAACATATGCCTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTATAAATGGCTTCACTCCAAGAAATTATCTGCACAACAATGCCAACAAGTGGAATGCCGATGTCCTGTTTGCAAGGCCAAAGTCTCCCGTGCTACTCTCATCCCAATCTACGGAAAATTTCAAACTACAGATGCCTCCAAAGCTAAAGCACCTCCAAATCTTGGCCCAGCCATCCCACGCAGACCGCTTGGGTGGCATGCTTGTGAGGCAGAGACACCAGCATCTCCAACCCCCCAGCTTCATTCCCACAACTATTCTCCTCAGTCACACTCCTACTACTCACAAACACAAAACGAATACATCTCTTCGTCAATGCTTAGCTCAAGTATCACAACAAACATTATCCATCCAGTGATTGGAATGTTTGGTGACACGATTTACCCAAGAACGTTGGGAAACACAACAACGAACCTGTACAGTTATCCAAATTCATATGGTAATGTGAGCAACAG

Library


Library category	ESTs
melon A library	1

Homology

[Close]

BLAST of MU56419 vs. Swiss-Prot
Match: RMA1_CAPAN (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.9e-38
Identity = 90/222 (40.54%), Postives = 121/222 (54.50%), Query Frame = 1


Query: 121 NINLAMEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVV 180
           N ++A+EQ  L+     +D  LG  K   D      + E+  S GFDCNICLD V +PV+
Sbjct: 2   NQDMALEQ--LDTTFNKHDTPLGKWKSMND------EVEENISGGFDCNICLDCVHEPVI 61

Query: 181 TLCGHLFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGK-FQTTDASK 240
           TLCGHL+CWPCIYKW++ + +S++   Q + +CPVCKA+VS  TLIP+YG+  Q+T  S+
Sbjct: 62  TLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSE 121

Query: 241 AKAPPNLGPAIPRRP----LGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEYXXX 300
            KA PNLG  IP+RP     G H     T ++P+  L    Y  QS +     Q  Y   
Sbjct: 122 GKA-PNLGIVIPQRPPSPRCGGHFLLPTTDSNPSQLLQRRGYQQQSQTRQPAYQGSYMSS 181

Query: 301 XXXXXXXXXXXXHPVIGMFGDTIYPRTLGNTTTNLYSYPNSY 360
                            M G+  Y R  GN++T +Y+YPNSY
Sbjct: 182 PMLSPGGATANMLQ-HSMIGEVAYARIFGNSSTTMYTYPNSY 213

Query: 361  420
           
Sbjct: 242  213

Query: 421  480
           
Sbjct: 302  213

Query: 481  540
           
Sbjct: 362  213

Query: 541  600
           
Sbjct: 422  213

Query: 601  660
           
Sbjct: 482  213

Query: 661  720
           
Sbjct: 542  213

Query: 721  772
           
Sbjct: 602  213

[Close]

BLAST of MU56419 vs. Swiss-Prot
Match: RMA3_ARATH (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.7e-30
Identity = 77/201 (38.31%), Postives = 102/201 (50.75%), Query Frame = 1


Query: 196 KLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSAQQ 255
           K + ++ T  +  +   S  FDCNICLD+  DPVVTLCGHLFCWPCIYKWLH  +LS+  
Sbjct: 22  KQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLH-VQLSSVS 81

Query: 256 CQQVECRCPVCKAKVSRATLIPIYGKFQTTDASK--AKAPPNLGPAIPRRPLGWHACEAE 315
             Q +  CPVCK+ ++  +L+P+YG+  ++ +S   +K    L   IPRRP         
Sbjct: 82  VDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPI 141

Query: 316 TPASP----------TPQLHSHNYSPQSHSYYSQTQNEYXXXXXXXXXXXXXXXHPVIGM 375
           T AS           +P  H+H YSP+  +    T                   +PVIGM
Sbjct: 142 TSASSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTD--------LANAVMMSFLYPVIGM 201

Query: 376 FGDTIYPRTLGNTTTNLYSYP 435
           FGD +Y R  G T TN  + P
Sbjct: 202 FGDLVYTRIFG-TFTNTIAQP 212

Query: 436  495
           
Sbjct: 262  212

Query: 496  555
           
Sbjct: 322  212

Query: 556  615
           
Sbjct: 382  212

Query: 616  675
           
Sbjct: 442  212

Query: 676  735
           
Sbjct: 502  212

Query: 736  763
           
Sbjct: 562  212

[Close]

BLAST of MU56419 vs. Swiss-Prot
Match: RMA1_ARATH (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27
Identity = 70/186 (37.63%), Postives = 94/186 (50.54%), Query Frame = 1


Query: 232 AEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSAQQCQQVECRCPVCK 291
           ++D     FDCNICLDSVQ+PVVTLCGHLFCWPCI+KWL  +  S     Q   +CPVCK
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCK 97

Query: 292 AKVSRATLIPIYGKFQTTDASKAKAPPNLGPAIPRRPLGWHACEAETPASPTPQL----- 351
           +KVS +TL+P+YG+ + T   + K       ++P+RP+G      E P SP         
Sbjct: 98  SKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVG-PVYRLEMPNSPYASTDLRLS 157

Query: 352 -HSHNYSPQSHSYYSQTQNEYXXXXXXXXXXXXXXXHPVIGMFGDTIYPRTLGNTTTNLY 411
              H  SPQ   YY  +                    PV+ M G+ +  R  G    + +
Sbjct: 158 QRVHFNSPQ-EGYYPVS-----GVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRF 210

Query: 412 SYPNSY 471
           +YP++Y
Sbjct: 218 AYPDTY 210

Query: 472  531
           
Sbjct: 278  210

Query: 532  591
           
Sbjct: 338  210

Query: 592  651
           
Sbjct: 398  210

Query: 652  711
           
Sbjct: 458  210

Query: 712  771
           
Sbjct: 518  210

[Close]

BLAST of MU56419 vs. Swiss-Prot
Match: RMA2_ARATH (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-23
Identity = 53/105 (50.48%), Postives = 64/105 (60.95%), Query Frame = 1


Query: 256 FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSAQQCQQVE-----CRCPVCKAKV 315
           FDCNICLD V+DPVVTLCGHLFCWPCI+KW ++   S Q+  Q +      +CPVCK+ V
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 316 SRATLIPIYGKFQTTDASKAKAPPN-LGPAIPRRPLGWHACEAET 375
           S ATL+PIYG+ Q    S +  P    GP    R +G    E E+
Sbjct: 79  SEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGES 123

Query: 376  435
           
Sbjct: 139  123

Query: 436  495
           
Sbjct: 199  123

Query: 496  553
           
Sbjct: 259  123

[Close]

BLAST of MU56419 vs. Swiss-Prot
Match: RN185_PONAB (E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-16
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 256 FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATL 315
           F+CNICLD+ +D V++LCGHLFCWPC+++WL ++       +QV   CPVCKA +SR  +
Sbjct: 37  FECNICLDTAKDAVISLCGHLFCWPCLHQWLETR-----PNRQV---CPVCKAGISRDKV 96

Query: 316 IPIYGKFQTTDAS-KAKAPP 375
           IP+YG+  T     + K PP
Sbjct: 97  IPLYGRGSTGQQDPREKTPP 108

Query: 376  435
           
Sbjct: 157  108

Query: 436  493
           
Sbjct: 217  108

[Close]

BLAST of MU56419 vs. TrEMBL
Match: A0A0A0KB39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128040 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 3.4e-105
Identity = 184/218 (84.40%), Postives = 192/218 (88.07%), Query Frame = 1


Query: 136 MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 195
           MEQ+YLEE LM NDNSLGGD+L LD Q YISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 196 LFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPN 255
           LFCWPCIYKWLH KKLSAQ+CQQVECRCPVCKAKVSRATL+PIYGKFQTTDASKA+APPN
Sbjct: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120

Query: 256 LGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEY-XXXXXXXXXXXX 315
           LGPAIPRRPLG HACEAETPASPTPQLHS NYSPQSHSYY+QTQNEY             
Sbjct: 121 LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180

Query: 316 XXXHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSN 375
              HPVIGMFGDTIY RT GNTTTNLY+YPNSYGNV+N
Sbjct: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNN 218

Query: 376  435
           
Sbjct: 241  218

Query: 436  495
           
Sbjct: 301  218

Query: 496  555
           
Sbjct: 361  218

Query: 556  615
           
Sbjct: 421  218

Query: 616  675
           
Sbjct: 481  218

Query: 676  735
           
Sbjct: 541  218

Query: 736  787
           
Sbjct: 601  218

[Close]

BLAST of MU56419 vs. TrEMBL
Match: U5FVY0_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0013s13580g PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.5e-49
Identity = 108/223 (48.43%), Postives = 140/223 (62.78%), Query Frame = 1


Query: 145 QYLEEALMPNDNSLGGDKLRL----DIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCG 204
           QY+EE +  ND +   DK  L     +   + D++D  S GFDCNICLDSV DPVVTLCG
Sbjct: 5   QYMEETMAQNDYNRE-DKPSLPNWKSVSETVIDSDDSRSSGFDCNICLDSVHDPVVTLCG 64

Query: 205 HLFCWPCIYKWLHSKKLSAQ-QCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAP 264
           HL+CWPCIYKWLH + +SA+ Q Q  + +CPVCKA+VS++T++P++G+ QTT   K KA 
Sbjct: 65  HLYCWPCIYKWLHFQSISAENQDQHPQQQCPVCKAEVSQSTIVPLFGRGQTTKPCKGKA- 124

Query: 265 PNLGPAIPRRPLGWHACEAETPASP--------TPQL-HSHNYSPQSHSYYSQTQNEYXX 324
           PNLG  IPRRP G  AC  ++P SP        TPQ+ H HNY  QS  YYSQ ++    
Sbjct: 125 PNLGIIIPRRPPG-RACGFDSPRSPIATSSPRVTPQIHHRHNYPHQSQHYYSQPRSNSTS 184

Query: 325 XXXXXXXXXXXXXHPVIGMFGDTIYPRTLGNTTTNLYSYPNSY 384
                           +GMFG+ +Y R  GN+ TN++SYPNSY
Sbjct: 185 PMRSPGGSTLNMPALEVGMFGEMMYSRVFGNSITNIHSYPNSY 224

Query: 385  444
           
Sbjct: 245  224

Query: 445  504
           
Sbjct: 305  224

Query: 505  564
           
Sbjct: 365  224

Query: 565  624
           
Sbjct: 425  224

Query: 625  684
           
Sbjct: 485  224

Query: 685  744
           
Sbjct: 545  224

Query: 745  772
           
Sbjct: 605  224

[Close]

BLAST of MU56419 vs. TrEMBL
Match: A0A067JX84_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25796 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 7.7e-49
Identity = 106/219 (48.40%), Postives = 140/219 (63.93%), Query Frame = 1


Query: 142 QQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGHLF 201
           Q Y+EE++  ND+ +  D  +      I+D+ED  S GF+CNICLDSVQ+PVVTLCGHL+
Sbjct: 4   QHYIEESIEENDH-MREDNWK-STSDNIADSEDSTSSGFECNICLDSVQEPVVTLCGHLY 63

Query: 202 CWPCIYKWLHSKKLSAQ-QCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPNL 261
           CWPCIYKWLH + +SA+ +  + + +CPVCKA+VS  TL+P++G+ QT   SK+KA PNL
Sbjct: 64  CWPCIYKWLHFQSISAENEDLEPQQQCPVCKAEVSEGTLVPLFGRGQTAKPSKSKA-PNL 123

Query: 262 GPAIPRRPLGWHACEAETPAS--------PTPQLHSHNYSPQSHSYYSQTQNEYXXXXXX 321
           G  IPRRPLG  AC  ++P S        PT Q ++ NY+  S  YYS+           
Sbjct: 124 GIIIPRRPLGL-ACGFDSPRSPFMTSSPQPTQQTYNRNYTNHSQVYYSRPGGYSPSPMIN 183

Query: 322 XXXXXXXXXHPVIGMFGDTIYPRTLGNTTTNLYSYPNSY 381
                     PVIGMFG+ IY R  GN+ TN+YSYP+SY
Sbjct: 184 PRVTAANMFDPVIGMFGEMIYARVFGNSVTNIYSYPDSY 218

Query: 382  441
           
Sbjct: 244  218

Query: 442  501
           
Sbjct: 304  218

Query: 502  561
           
Sbjct: 364  218

Query: 562  621
           
Sbjct: 424  218

Query: 622  681
           
Sbjct: 484  218

Query: 682  741
           
Sbjct: 544  218

Query: 742  772
           
Sbjct: 604  218

[Close]

BLAST of MU56419 vs. TrEMBL
Match: B9N2C6_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s13210g PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.5e-47
Identity = 107/223 (47.98%), Postives = 140/223 (62.78%), Query Frame = 1


Query: 142 QQYLEEALMPNDNSLGGDKLRLD---IQTYISDAEDEASHGFDCNICLDSVQDPVVTLCG 201
           +QYLEE +  ND +       L    I     D+++  S+GFDCNICLDSVQDPVVTLCG
Sbjct: 4   EQYLEETVAQNDYNREYKPSLLKWKPIPKTAIDSDESPSNGFDCNICLDSVQDPVVTLCG 63

Query: 202 HLFCWPCIYKWLHSKKLSAQ-QCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAP 261
           HL+CWPCIYKWLHS+ +SA+ Q QQ + +CPVCKA+VS++T++P++G+ QTT  S  KA 
Sbjct: 64  HLYCWPCIYKWLHSQSISAENQDQQPQQQCPVCKAEVSQSTIVPLFGRGQTTKPSMRKA- 123

Query: 262 PNLGPAIPRRPLGWHACEAETPASP----TPQ-----LHSHNYSPQSHSYYSQTQNEYXX 321
           PN+G  IP RP G  AC  ++P +P    +P+      H HNY  QS  +YSQ  +    
Sbjct: 124 PNVGIIIPHRPPGL-ACGFDSPRTPIATGSPRPVQQIHHRHNYPHQSQLHYSQPGSYSAS 183

Query: 322 XXXXXXXXXXXXXHPVIGMFGDTIYPRTLGNTTTNLYSYPNSY 381
                         PV+GMFG+ IY R  GN+ TN+ SYPNSY
Sbjct: 184 PMHSPRGTTINMADPVVGMFGEMIYARVFGNSITNMPSYPNSY 224

Query: 382  441
           
Sbjct: 244  224

Query: 442  501
           
Sbjct: 304  224

Query: 502  561
           
Sbjct: 364  224

Query: 562  621
           
Sbjct: 424  224

Query: 622  681
           
Sbjct: 484  224

Query: 682  741
           
Sbjct: 544  224

Query: 742  772
           
Sbjct: 604  224

[Close]

BLAST of MU56419 vs. TrEMBL
Match: B9RW06_RICCO (Rnf5, putative OS=Ricinus communis GN=RCOM_1175310 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.2e-47
Identity = 104/219 (47.49%), Postives = 136/219 (62.10%), Query Frame = 1


Query: 145 QYLEEALMPNDNSLGGDKLRLD---IQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 204
           QY+EE L  ++ S        +   I   + D+++  S GFDCNICLD VQDPVVTLCGH
Sbjct: 8   QYVEEGLSESNYSRENTSPLENWKSISNSVIDSDESPSSGFDCNICLDPVQDPVVTLCGH 67

Query: 205 LFCWPCIYKWLHSKKLSAQ-QCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPP 264
           L+CWPCIYKWLH + +S + +  Q+  +CPVCKA+VS  TL+P++G+ QTT  SK+KA P
Sbjct: 68  LYCWPCIYKWLHFQSISTENEDLQLHQQCPVCKAEVSEGTLVPLFGRGQTTKPSKSKA-P 127

Query: 265 NLGPAIPRRPLGWHACEAETPASP-------TPQLHSHNYSPQSHSYYSQTQNEYXXXXX 324
           NLG  IPRRP G  AC  ++P SP       T ++++ NY  QS  YYSQ  +       
Sbjct: 128 NLGIIIPRRPRGL-ACGFDSPRSPFTSSPHQTQEIYNRNYPHQSQLYYSQPGSYSGSPML 187

Query: 325 XXXXXXXXXXHPVIGMFGDTIYPRTLGNTTTNLYSYPNS 384
                      PVIGMFG+ IY R  GN+ TN+Y+YPNS
Sbjct: 188 NPRVTAGNMFDPVIGMFGEMIYARVFGNSITNIYNYPNS 224

Query: 385  444
           
Sbjct: 248  224

Query: 445  504
           
Sbjct: 308  224

Query: 505  564
           
Sbjct: 368  224

Query: 565  624
           
Sbjct: 428  224

Query: 625  684
           
Sbjct: 488  224

Query: 685  744
           
Sbjct: 548  224

Query: 745  769
           
Sbjct: 608  224

[Close]

BLAST of MU56419 vs. TAIR10
Match: AT4G27470.1 (AT4G27470.1 RING membrane-anchor 3)

HSP 1 Score: 132.5 bits (332), Expect = 3.8e-31
Identity = 77/201 (38.31%), Postives = 102/201 (50.75%), Query Frame = 1


Query: 196 KLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSAQQ 255
           K + ++ T  +  +   S  FDCNICLD+  DPVVTLCGHLFCWPCIYKWLH  +LS+  
Sbjct: 22  KQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLH-VQLSSVS 81

Query: 256 CQQVECRCPVCKAKVSRATLIPIYGKFQTTDASK--AKAPPNLGPAIPRRPLGWHACEAE 315
             Q +  CPVCK+ ++  +L+P+YG+  ++ +S   +K    L   IPRRP         
Sbjct: 82  VDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPI 141

Query: 316 TPASP----------TPQLHSHNYSPQSHSYYSQTQNEYXXXXXXXXXXXXXXXHPVIGM 375
           T AS           +P  H+H YSP+  +    T                   +PVIGM
Sbjct: 142 TSASSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTD--------LANAVMMSFLYPVIGM 201

Query: 376 FGDTIYPRTLGNTTTNLYSYP 435
           FGD +Y R  G T TN  + P
Sbjct: 202 FGDLVYTRIFG-TFTNTIAQP 212

Query: 436  495
           
Sbjct: 262  212

Query: 496  555
           
Sbjct: 322  212

Query: 556  615
           
Sbjct: 382  212

Query: 616  675
           
Sbjct: 442  212

Query: 676  735
           
Sbjct: 502  212

Query: 736  763
           
Sbjct: 562  212

[Close]

BLAST of MU56419 vs. TAIR10
Match: AT4G03510.1 (AT4G03510.1 RING membrane-anchor 1)

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-29
Identity = 70/186 (37.63%), Postives = 94/186 (50.54%), Query Frame = 1


Query: 232 AEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSAQQCQQVECRCPVCK 291
           ++D     FDCNICLDSVQ+PVVTLCGHLFCWPCI+KWL  +  S     Q   +CPVCK
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCK 97

Query: 292 AKVSRATLIPIYGKFQTTDASKAKAPPNLGPAIPRRPLGWHACEAETPASPTPQL----- 351
           +KVS +TL+P+YG+ + T   + K       ++P+RP+G      E P SP         
Sbjct: 98  SKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVG-PVYRLEMPNSPYASTDLRLS 157

Query: 352 -HSHNYSPQSHSYYSQTQNEYXXXXXXXXXXXXXXXHPVIGMFGDTIYPRTLGNTTTNLY 411
              H  SPQ   YY  +                    PV+ M G+ +  R  G    + +
Sbjct: 158 QRVHFNSPQ-EGYYPVS-----GVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRF 210

Query: 412 SYPNSY 471
           +YP++Y
Sbjct: 218 AYPDTY 210

Query: 472  531
           
Sbjct: 278  210

Query: 532  591
           
Sbjct: 338  210

Query: 592  651
           
Sbjct: 398  210

Query: 652  711
           
Sbjct: 458  210

Query: 712  771
           
Sbjct: 518  210

[Close]

BLAST of MU56419 vs. TAIR10
Match: AT4G28270.1 (AT4G28270.1 RING membrane-anchor 2)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-24
Identity = 53/105 (50.48%), Postives = 64/105 (60.95%), Query Frame = 1


Query: 256 FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSAQQCQQVE-----CRCPVCKAKV 315
           FDCNICLD V+DPVVTLCGHLFCWPCI+KW ++   S Q+  Q +      +CPVCK+ V
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 316 SRATLIPIYGKFQTTDASKAKAPPN-LGPAIPRRPLGWHACEAET 375
           S ATL+PIYG+ Q    S +  P    GP    R +G    E E+
Sbjct: 79  SEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGES 123

Query: 376  435
           
Sbjct: 139  123

Query: 436  495
           
Sbjct: 199  123

Query: 496  553
           
Sbjct: 259  123

[Close]

BLAST of MU56419 vs. TAIR10
Match: AT1G19310.1 (AT1G19310.1 RING/U-box superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-24
Identity = 51/122 (41.80%), Postives = 67/122 (54.92%), Query Frame = 1


Query: 226 SDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSAQQCQQVECRCPV 285
           +D  +  S  F+CNICLD  QDP+VTLCGHLFCWPC+YKWLH    S          CPV
Sbjct: 11  NDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKD--------CPV 70

Query: 286 CKAKVSRATLIPIYGKFQTTDASKAKAPPNLGPAIPRRPLGWHACEAETPASPTPQLHSH 345
           CKA +    L+P+YG+ +++   ++K+ P L   +P RP G     A+ P       H H
Sbjct: 71  CKAVIEEDRLVPLYGRGKSSADPRSKSIPGL--EVPNRPSGQRPETAQPPDPNHGFAHHH 122

Query: 346 NY 405
            +
Sbjct: 131 GF 122

Query: 406  465
           
Sbjct: 191  122

Query: 466  525
           
Sbjct: 251  122

Query: 526  585
           
Sbjct: 311  122

Query: 586  592
           
Sbjct: 371  122

[Close]

BLAST of MU56419 vs. TAIR10
Match: AT1G74990.1 (AT1G74990.1 RING/U-box superfamily protein)

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-23
Identity = 55/132 (41.67%), Postives = 72/132 (54.55%), Query Frame = 1


Query: 223 ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSAQQCQQVECRCP 282
           I++ ED+AS+ F CNICL+  ++P+VTLCGHLFCWPC+YKWLH    S          CP
Sbjct: 6   ITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSN--------HCP 65

Query: 283 VCKAKVSRATLIPIYGKFQTTDASKAKAPPNLGPAIPRRPLGWHACEAETPASPTPQLHS 342
           VCKA V   TL+P+YG  + +   ++K   N G  +P RP    A   ET      Q H 
Sbjct: 66  VCKALVKEDTLVPLYGMGKPSSDPRSKL--NSGVTVPNRPA---ATRTETARPRLEQRHH 124

Query: 343 HNYSPQSHSYYS 402
            +     HS ++
Sbjct: 126 GSSFFGGHSSFA 124

Query: 403  462
           
Sbjct: 186  124

Query: 463  522
           
Sbjct: 246  124

Query: 523  582
           
Sbjct: 306  124

Query: 583  619
           
Sbjct: 366  124

[Close]

BLAST of MU56419 vs. NCBI nr
Match: gi|659094879|ref|XP_008448288.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo])

HSP 1 Score: 420.2 bits (1079), Expect = 2.6e-114
Identity = 202/218 (92.66%), Postives = 202/218 (92.66%), Query Frame = 1


Query: 136 MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 195
           MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 196 LFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPN 255
           LFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPN
Sbjct: 61  LFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPN 120

Query: 256 LGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEY-XXXXXXXXXXXX 315
           LGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEY             
Sbjct: 121 LGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEYISSSMLSSSSITT 180

Query: 316 XXXHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSN 375
              HPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSN
Sbjct: 181 NIIHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSN 218

Query: 376  435
           
Sbjct: 241  218

Query: 436  495
           
Sbjct: 301  218

Query: 496  555
           
Sbjct: 361  218

Query: 556  615
           
Sbjct: 421  218

Query: 616  675
           
Sbjct: 481  218

Query: 676  735
           
Sbjct: 541  218

Query: 736  787
           
Sbjct: 601  218

[Close]

BLAST of MU56419 vs. NCBI nr
Match: gi|449444358|ref|XP_004139942.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus])

HSP 1 Score: 382.9 bits (982), Expect = 4.6e-103
Identity = 184/218 (84.40%), Postives = 192/218 (88.07%), Query Frame = 1


Query: 136 MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 195
           MEQ+YLEE LM NDNSLGGD+L LD Q YISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 196 LFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPN 255
           LFCWPCIYKWLH KKLSAQ+CQQVECRCPVCKAKVSRATL+PIYGKFQTTDASKA+APPN
Sbjct: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120

Query: 256 LGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEY-XXXXXXXXXXXX 315
           LGPAIPRRPLG HACEAETPASPTPQLHS NYSPQSHSYY+QTQNEY             
Sbjct: 121 LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180

Query: 316 XXXHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSN 375
              HPVIGMFGDTIY RT GNTTTNLY+YPNSYGNV+N
Sbjct: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNN 218

Query: 376  435
           
Sbjct: 241  218

Query: 436  495
           
Sbjct: 301  218

Query: 496  555
           
Sbjct: 361  218

Query: 556  615
           
Sbjct: 421  218

Query: 616  675
           
Sbjct: 481  218

Query: 676  735
           
Sbjct: 541  218

Query: 736  787
           
Sbjct: 601  218

[Close]

BLAST of MU56419 vs. NCBI nr
Match: gi|566201173|ref|XP_006376502.1| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 197.2 bits (500), Expect = 3.6e-47
Identity = 108/223 (48.43%), Postives = 140/223 (62.78%), Query Frame = 1


Query: 145 QYLEEALMPNDNSLGGDKLRL----DIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCG 204
           QY+EE +  ND +   DK  L     +   + D++D  S GFDCNICLDSV DPVVTLCG
Sbjct: 5   QYMEETMAQNDYNRE-DKPSLPNWKSVSETVIDSDDSRSSGFDCNICLDSVHDPVVTLCG 64

Query: 205 HLFCWPCIYKWLHSKKLSAQ-QCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAP 264
           HL+CWPCIYKWLH + +SA+ Q Q  + +CPVCKA+VS++T++P++G+ QTT   K KA 
Sbjct: 65  HLYCWPCIYKWLHFQSISAENQDQHPQQQCPVCKAEVSQSTIVPLFGRGQTTKPCKGKA- 124

Query: 265 PNLGPAIPRRPLGWHACEAETPASP--------TPQL-HSHNYSPQSHSYYSQTQNEYXX 324
           PNLG  IPRRP G  AC  ++P SP        TPQ+ H HNY  QS  YYSQ ++    
Sbjct: 125 PNLGIIIPRRPPG-RACGFDSPRSPIATSSPRVTPQIHHRHNYPHQSQHYYSQPRSNSTS 184

Query: 325 XXXXXXXXXXXXXHPVIGMFGDTIYPRTLGNTTTNLYSYPNSY 384
                           +GMFG+ +Y R  GN+ TN++SYPNSY
Sbjct: 185 PMRSPGGSTLNMPALEVGMFGEMMYSRVFGNSITNIHSYPNSY 224

Query: 385  444
           
Sbjct: 245  224

Query: 445  504
           
Sbjct: 305  224

Query: 505  564
           
Sbjct: 365  224

Query: 565  624
           
Sbjct: 425  224

Query: 625  684
           
Sbjct: 485  224

Query: 685  744
           
Sbjct: 545  224

Query: 745  772
           
Sbjct: 605  224

[Close]

BLAST of MU56419 vs. NCBI nr
Match: gi|802752613|ref|XP_012088296.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas])

HSP 1 Score: 196.8 bits (499), Expect = 4.6e-47
Identity = 106/219 (48.40%), Postives = 140/219 (63.93%), Query Frame = 1


Query: 142 QQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGHLF 201
           Q Y+EE++  ND+ +  D  +      I+D+ED  S GF+CNICLDSVQ+PVVTLCGHL+
Sbjct: 4   QHYIEESIEENDH-MREDNWK-STSDNIADSEDSTSSGFECNICLDSVQEPVVTLCGHLY 63

Query: 202 CWPCIYKWLHSKKLSAQ-QCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPNL 261
           CWPCIYKWLH + +SA+ +  + + +CPVCKA+VS  TL+P++G+ QT   SK+KA PNL
Sbjct: 64  CWPCIYKWLHFQSISAENEDLEPQQQCPVCKAEVSEGTLVPLFGRGQTAKPSKSKA-PNL 123

Query: 262 GPAIPRRPLGWHACEAETPAS--------PTPQLHSHNYSPQSHSYYSQTQNEYXXXXXX 321
           G  IPRRPLG  AC  ++P S        PT Q ++ NY+  S  YYS+           
Sbjct: 124 GIIIPRRPLGL-ACGFDSPRSPFMTSSPQPTQQTYNRNYTNHSQVYYSRPGGYSPSPMIN 183

Query: 322 XXXXXXXXXHPVIGMFGDTIYPRTLGNTTTNLYSYPNSY 381
                     PVIGMFG+ IY R  GN+ TN+YSYP+SY
Sbjct: 184 PRVTAANMFDPVIGMFGEMIYARVFGNSVTNIYSYPDSY 218

Query: 382  441
           
Sbjct: 244  218

Query: 442  501
           
Sbjct: 304  218

Query: 502  561
           
Sbjct: 364  218

Query: 562  621
           
Sbjct: 424  218

Query: 622  681
           
Sbjct: 484  218

Query: 682  741
           
Sbjct: 544  218

Query: 742  772
           
Sbjct: 604  218

[Close]

BLAST of MU56419 vs. NCBI nr
Match: gi|743884596|ref|XP_011037320.1| (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Populus euphratica])

HSP 1 Score: 194.5 bits (493), Expect = 2.3e-46
Identity = 109/223 (48.88%), Postives = 138/223 (61.88%), Query Frame = 1


Query: 145 QYLEEALMPNDNSLGGDKLRLDIQTYIS----DAEDEASHGFDCNICLDSVQDPVVTLCG 204
           QY+EE +  ND +   DK  L     +S    D++D  S GFDCNICLDSV DPVVTLCG
Sbjct: 5   QYMEETVAQNDYNTE-DKPSLPNWKSVSETAIDSDDSPSSGFDCNICLDSVHDPVVTLCG 64

Query: 205 HLFCWPCIYKWLHSKKLSAQ-QCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAP 264
           HL+CWPCIYKWLH + +SA+ Q Q  + +CPVCKA+VS++T++P++G+ QTT   K KA 
Sbjct: 65  HLYCWPCIYKWLHFQSISAENQDQHPQQQCPVCKAEVSQSTIVPLFGRGQTTKPCKGKA- 124

Query: 265 PNLGPAIPRRPLGWHACEAETPASP--------TPQL-HSHNYSPQSHSYYSQTQNEYXX 324
           PNLG  IPRRP G  AC  ++P SP        TPQ+ H HNY  QS  YYSQ       
Sbjct: 125 PNLGIIIPRRPPG-RACGFDSPRSPIATSSPRVTPQIHHRHNYPHQSQHYYSQPGGNSTS 184

Query: 325 XXXXXXXXXXXXXHPVIGMFGDTIYPRTLGNTTTNLYSYPNSY 384
                           +GMFG+ +Y R  GN+ TN++SYPNSY
Sbjct: 185 PMRSPGGSTLNMPVREVGMFGEMMYSRVFGNSITNIHSYPNSY 224

Query: 385  444
           
Sbjct: 245  224

Query: 445  504
           
Sbjct: 305  224

Query: 505  564
           
Sbjct: 365  224

Query: 565  624
           
Sbjct: 425  224

Query: 625  684
           
Sbjct: 485  224

Query: 685  744
           
Sbjct: 545  224

Query: 745  772
           
Sbjct: 605  224

The following BLAST results are available for this feature:

BLAST of MU56419 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RMA1_CAPAN	3.9e-38	40.54	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1	[more]
RMA3_ARATH	6.7e-30	38.31	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1	[more]
RMA1_ARATH	1.4e-27	37.63	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1	[more]
RMA2_ARATH	2.7e-23	50.48	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2 PE=1 SV=1	[more]
RN185_PONAB	3.2e-16	48.75	E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2 SV=1	[more]

BLAST of MU56419 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB39_CUCSA	3.4e-105	84.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128040 PE=4 SV=1	[more]
U5FVY0_POPTR	4.5e-49	48.43	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0013s13580g PE=4 SV=1	[more]
A0A067JX84_JATCU	7.7e-49	48.40	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25796 PE=4 SV=1	[more]
B9N2C6_POPTR	2.5e-47	47.98	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s13210g PE=4 SV=1	[more]
B9RW06_RICCO	4.2e-47	47.49	Rnf5, putative OS=Ricinus communis GN=RCOM_1175310 PE=4 SV=1	[more]

BLAST of MU56419 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27470.1	3.8e-31	38.31	RING membrane-anchor 3	[more]
AT4G03510.1	7.9e-29	37.63	RING membrane-anchor 1	[more]
AT4G28270.1	1.5e-24	50.48	RING membrane-anchor 2	[more]
AT1G19310.1	3.4e-24	41.80	RING/U-box superfamily protein	[more]
AT1G74990.1	1.0e-23	41.67	RING/U-box superfamily protein	[more]

BLAST of MU56419 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094879\|ref\|XP_008448288.1\|	2.6e-114	92.66	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo]	[more]
gi\|449444358\|ref\|XP_004139942.1\|	4.6e-103	84.40	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus]	[more]
gi\|566201173\|ref\|XP_006376502.1\|	3.6e-47	48.43	zinc finger family protein [Populus trichocarpa]	[more]
gi\|802752613\|ref\|XP_012088296.1\|	4.6e-47	48.40	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]	[more]
gi\|743884596\|ref\|XP_011037320.1\|	2.3e-46	48.88	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR018957	Znf_C3HC4_RING-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C013615	MELO3C013615	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
A10H10	A10H10	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 43..91 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 43..92 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 32..104 score: 8.5
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 58..67 scor
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 43..91 score: 7.
None	No IPR available	PANTHER	PTHR12313	RNF5	coord: 3..212 score: 2.6
None	No IPR available	PANTHER	PTHR12313:SF5	SUBFAMILY NOT NAMED	coord: 3..212 score: 2.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 36..105 score: 1.93