MU56233 (transcribed_cluster) Melon (DHL92) v3.5.1

NameMU56233
Typetranscribed_cluster
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCleavage stimulation factor subunit 3
Locationchr8 : 23297406 .. 23298135 (-)
Sequence length723
The following sequences are available for this feature:

transcribed_cluster sequence

TGTGTTTTAAGGATTTAGTTTTTATAGTTAGCTTAATCCTCTGTGTACAGTACTATAAAATTACTAAGTACAGTTATTATGATTTTGGTTCTGAGTTTCAAAGACTACATCATTAGTGTTCAAGTCCAAGAAAGAAGTAGTTCTACAAGAATTCGAATCTCTTGTTTACTATTATCTCAATTCTTAAACCATTACTGTAAGTTCAAAAGTTAGTGATCCATTTTTCTAGCAAGTACCAATTACTTTTTGCTGATTGGCTATATGAGTCTGTAGCATCGAGTATTGCATATAGTGATTAATTTCGTTATAAATCAATTTGATCAAAACATCCCATGTTTCGTTCTCCAACACTTTCTTCTATTCTTCTATTACTTTGGAAGTGTGAAATTTACCTATTGTCATGTTGAATTTGGATTTCTTTTTCCTACATCTTTACATAATCTTTGTTTTCTTAAAAGAAAAAAAGGAACTATTTGATATTATTATAACTAGACGGTAACATTTGTTAATAGGTCGATAGGACAAGGGGACAATGAAAGTACAACAGTCCAAAGTCAGCCATTGCCTAAAGATTTTTTCAGGATAAGACAAATCCAGAAAGCAAGAGGAGCTACTTCTTCCCAAACAGGTTCTTTCCTATGGAAGTGCTATTTCTGGAGACCTCTCTGGTAGCACTGGTTGAATTCATTATGCTTTTCTTTTTCTAAATTATTATCAACTTTA
Library categoryESTs
melon 46d library1
BLAST of MU56233 vs. TrEMBL
Match: A0A0A0KZK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594420 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.5e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1

Query: 523 QGDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 582
           Q DNESTTVQSQP+PKDFFRIRQIQKARGATSSQTGS
Sbjct: 645 QEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQTGS 681

Query: 583 634
           
Sbjct: 705 681

BLAST of MU56233 vs. TrEMBL
Match: V4SV92_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011123mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1

Query: 511 RSIGQGDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 570
           + IGQ D+E+TTVQSQP P+DFFRIRQ++KARGA SSQTGS
Sbjct: 714 KDIGQDDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGS 754

Query: 571 630
           
Sbjct: 774 754

Query: 631 634
           
Sbjct: 834 754

BLAST of MU56233 vs. TrEMBL
Match: A0A067FDS4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004093mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1

Query: 511 RSIGQGDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 570
           + IGQ D+E+TTVQSQP P+DFFRIRQ++KARGA SSQTGS
Sbjct: 714 KDIGQDDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGS 754

Query: 571 630
           
Sbjct: 774 754

Query: 631 634
           
Sbjct: 834 754

BLAST of MU56233 vs. TrEMBL
Match: A0A067FA60_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004093mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1

Query: 511 RSIGQGDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 570
           + IGQ D+E+TTVQSQP P+DFFRIRQ++KARGA SSQTGS
Sbjct: 718 KDIGQDDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGS 758

Query: 571 630
           
Sbjct: 778 758

Query: 631 634
           
Sbjct: 838 758

BLAST of MU56233 vs. TrEMBL
Match: A0A061FRX4_THECC (Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_044507 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-07
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1

Query: 517 IGQGDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 576
           +GQ ++E+TTVQSQPLP+D FRIRQIQKARG ++SQTGS
Sbjct: 663 MGQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQTGS 701

Query: 577 634
           
Sbjct: 723 701

BLAST of MU56233 vs. TAIR10
Match: AT1G17760.1 (AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 6.6e-06
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1

Query: 523 QGDNESTTVQSQPLPKDFFRIRQIQKARG-ATSSQT 582
           Q ++++ TVQSQPLP D FR+RQ++KARG ATSSQT
Sbjct: 679 QEEDDTATVQSQPLPTDVFRLRQMRKARGIATSSQT 714

Query: 583 628
           
Sbjct: 739 714

BLAST of MU56233 vs. NCBI nr
Match: gi|778695235|ref|XP_011653954.1| (PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 4.9e-11
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1

Query: 520 GQGDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 579
           GQ DNESTTVQSQP+PKDFFRIRQIQKARGATSSQTGS
Sbjct: 639 GQEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQTGS 676

Query: 580 634
           
Sbjct: 699 676

BLAST of MU56233 vs. NCBI nr
Match: gi|659082815|ref|XP_008442046.1| (PREDICTED: cleavage stimulation factor subunit 3 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1

Query: 523 QGDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 582
           Q DNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS
Sbjct: 713 QEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 749

Query: 583 634
           
Sbjct: 773 749

BLAST of MU56233 vs. NCBI nr
Match: gi|778695232|ref|XP_011653953.1| (PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1

Query: 523 QGDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 582
           Q DNESTTVQSQP+PKDFFRIRQIQKARGATSSQTGS
Sbjct: 713 QEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQTGS 749

Query: 583 634
           
Sbjct: 773 749

BLAST of MU56233 vs. NCBI nr
Match: gi|700199750|gb|KGN54908.1| (hypothetical protein Csa_4G594420 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1

Query: 523 QGDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 582
           Q DNESTTVQSQP+PKDFFRIRQIQKARGATSSQTGS
Sbjct: 645 QEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQTGS 681

Query: 583 634
           
Sbjct: 705 681

BLAST of MU56233 vs. NCBI nr
Match: gi|641845371|gb|KDO64259.1| (hypothetical protein CISIN_1g004093mg [Citrus sinensis])

HSP 1 Score: 69.7 bits (169), Expect = 7.9e-09
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1

Query: 511 RSIGQGDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 570
           + IGQ D+E+TTVQSQP P+DFFRIRQ++KARGA SSQTGS
Sbjct: 718 KDIGQDDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGS 758

Query: 571 630
           
Sbjct: 778 758

Query: 631 634
           
Sbjct: 838 758

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KZK4_CUCSA8.5e-1094.59Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594420 PE=4 SV=1[more]
V4SV92_9ROSI3.6e-0875.61Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011123mg PE=4 SV=1[more]
A0A067FDS4_CITSI3.6e-0875.61Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004093mg PE=4 SV=1[more]
A0A067FA60_CITSI3.6e-0875.61Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004093mg PE=4 SV=1[more]
A0A061FRX4_THECC5.1e-0774.36Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao G... [more]
Match NameE-valueIdentityDescription
AT1G17760.16.6e-0666.67 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|778695235|ref|XP_011653954.1|4.9e-1194.74PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis sativus][more]
gi|659082815|ref|XP_008442046.1|1.4e-1097.30PREDICTED: cleavage stimulation factor subunit 3 [Cucumis melo][more]
gi|778695232|ref|XP_011653953.1|2.4e-1094.59PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis sativus][more]
gi|700199750|gb|KGN54908.1|2.4e-1094.59hypothetical protein Csa_4G594420 [Cucumis sativus][more]
gi|641845371|gb|KDO64259.1|7.9e-0975.61hypothetical protein CISIN_1g004093mg [Citrus sinensis][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
MELO3C008873MELO3C008873gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
46D40D0646D40D06EST