MU54336 (transcribed_cluster) Melon (DHL92) v3.5.1

NameMU54336
Typetranscribed_cluster
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCleavage stimulation factor subunit 3
Locationchr8 : 23297075 .. 23303974 (-)
Sequence length786
The following sequences are available for this feature:

transcribed_cluster sequence

ATTTCTTGCAAACTTACCTTCTGTTGATGGTCCAACTCCAGACATTGATATTGTACTATCAGTTTGTCTCGAGAGTGACCTACCTACAGTTCCATTGGTCAAATCAGGGGCGACACCAGCACAAGTTTCGGGTGGTCCTGTACCTACCACTAGTGACCTTTCTGGTTCAAGCAAGTCTCATGCATTTTCCAATTCCTCCCTAAAGCATACCAGAGACAAGCAATCAGGAAAGAGAAAAGATTACGACAGACAAGAGGACAATGAAAGTACAACAGTCCAAAGTCAGCCATTGCCTAAAGATTTTTTCAGGATAAGACAAATCCAGAAAGCAAGAGGAGCTACTTCTTCCCAAACAGGTTCTGCTTCCTATGGAAGTGCTATTTCTGGAGACCTCTCTGGTAGCACTGGTTGAATTCATTATGCTTTTCTTTTTCTAAATTATTATCAACTTTATTCTTTCCCATAAGTTGACAATAGAGACACTCTCATTTTCCTTAAAAAGAGTTTCTCTTAAAGAAAGCTAGTACAATCATCATTTTGCTTCAGAATCTTATACTCTCTACATGCATAACTCATTACAGAATTCTTCTCCTTAATGCACATCATTACGGCTGATTTGAGAGGTCAAACTTCAATGTAATTTCATAGAAAATTTTTGATTAAATCTTGGAGGATTTATTATGTAGTTTCGAGGAGTATTCTCCTTATATCAAGATTGTGGATCATTTATTAAAATGATAATGTTTTTCATACAAAATGAGAAGATTTCTATTATTTATAGAGTCT
BLAST of MU54336 vs. Swiss-Prot
Match: CTF77_ARATH (Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana GN=CSTF77 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.5e-32
Identity = 79/139 (56.83%), Postives = 98/139 (70.50%), Query Frame = 2

Query: 2   FLANLPSVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 61
           FLANLP VDGPTP++D+VLS+CL+SD PT   VK         G P P+ +D SG ++  
Sbjct: 605 FLANLPIVDGPTPNVDVVLSICLQSDFPTGQTVKQSFA---AKGNP-PSQNDPSGPTRG- 664

Query: 62  AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARG-ATSSQ-- 121
                S +  RD+++ KRKD DRQE++++ TVQSQPLP D FR+RQ++KARG ATSSQ  
Sbjct: 665 ----VSQRLPRDRRATKRKDSDRQEEDDTATVQSQPLPTDVFRLRQMRKARGIATSSQTP 724

Query: 122 TGSASYGSAISGDLSGSTG 181
           TGS SYGSA SG+LSGSTG
Sbjct: 725 TGSTSYGSAFSGELSGSTG 734

Query: 182 241
           
Sbjct: 785 734

Query: 242 301
           
Sbjct: 845 734

Query: 302 361
           
Sbjct: 905 734

Query: 362 410
           
Sbjct: 965 734

BLAST of MU54336 vs. TrEMBL
Match: A0A0A0KZK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594420 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.5e-68
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 2

Query: 2   FLANLPSVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 61
           FLANLP+VDGPTPD+DIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH
Sbjct: 562 FLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 621

Query: 62  AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 121
           AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQP+PKDFFRIRQIQKARGATSSQTGS
Sbjct: 622 AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQTGS 681

Query: 122 ASYGSAISGDLSGSTG 181
           ASYGSAISGDLSGSTG
Sbjct: 682 ASYGSAISGDLSGSTG 697

Query: 182 241
           
Sbjct: 742 697

Query: 242 301
           
Sbjct: 802 697

Query: 302 361
           
Sbjct: 862 697

Query: 362 410
           
Sbjct: 922 697

BLAST of MU54336 vs. TrEMBL
Match: A0A061FR79_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_044507 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 91/135 (67.41%), Postives = 110/135 (81.48%), Query Frame = 2

Query: 2   FLANLPSVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 61
           FL NLP+++GP P++DIVLS+CL+SDLPT    K  A P+Q + GP P+TSDLSGSSKSH
Sbjct: 620 FLTNLPALEGPKPNVDIVLSICLQSDLPTGQTKKLTALPSQRTTGPAPSTSDLSGSSKSH 679

Query: 62  AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 121
              +SS    RD+  GKRKD DRQE++E+TTVQSQPLP+D FRIRQIQKARG ++SQTGS
Sbjct: 680 PIPSSSSFRPRDRHLGKRKDLDRQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQTGS 739

Query: 122 ASYGSAISGDLSGST 181
            SYGSA+SGDLSGST
Sbjct: 740 VSYGSALSGDLSGST 754

Query: 182 241
           
Sbjct: 800 754

Query: 242 301
           
Sbjct: 860 754

Query: 302 361
           
Sbjct: 920 754

Query: 362 407
           
Sbjct: 980 754

BLAST of MU54336 vs. TrEMBL
Match: A0A061FQQ9_THECC (Tetratricopeptide repeat-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_044507 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 91/135 (67.41%), Postives = 110/135 (81.48%), Query Frame = 2

Query: 2   FLANLPSVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 61
           FL NLP+++GP P++DIVLS+CL+SDLPT    K  A P+Q + GP P+TSDLSGSSKSH
Sbjct: 626 FLTNLPALEGPKPNVDIVLSICLQSDLPTGQTKKLTALPSQRTTGPAPSTSDLSGSSKSH 685

Query: 62  AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 121
              +SS    RD+  GKRKD DRQE++E+TTVQSQPLP+D FRIRQIQKARG ++SQTGS
Sbjct: 686 PIPSSSSFRPRDRHLGKRKDLDRQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQTGS 745

Query: 122 ASYGSAISGDLSGST 181
            SYGSA+SGDLSGST
Sbjct: 746 VSYGSALSGDLSGST 760

Query: 182 241
           
Sbjct: 806 760

Query: 242 301
           
Sbjct: 866 760

Query: 302 361
           
Sbjct: 926 760

Query: 362 407
           
Sbjct: 986 760

BLAST of MU54336 vs. TrEMBL
Match: A0A0D2VLE3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_N006700 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.8e-43
Identity = 89/135 (65.93%), Postives = 110/135 (81.48%), Query Frame = 2

Query: 2   FLANLPSVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 61
           FLA LPS++GP P++DIVLS+CL++D PTV   K+ + P+Q + GP P+TSDLSGSSKSH
Sbjct: 526 FLAGLPSIEGPAPNVDIVLSICLQNDYPTVQTKKATSLPSQRTAGPAPSTSDLSGSSKSH 585

Query: 62  AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 121
              ++S    RD+Q GKRKD DRQE+ ESTTVQSQPL +D FRIRQ+QKARG ++SQTGS
Sbjct: 586 PIPSNSSFRPRDRQLGKRKDQDRQEEEESTTVQSQPLQRDAFRIRQMQKARGGSASQTGS 645

Query: 122 ASYGSAISGDLSGST 181
            SYGSA+SGDLSGST
Sbjct: 646 VSYGSALSGDLSGST 660

Query: 182 241
           
Sbjct: 706 660

Query: 242 301
           
Sbjct: 766 660

Query: 302 361
           
Sbjct: 826 660

Query: 362 407
           
Sbjct: 886 660

BLAST of MU54336 vs. TrEMBL
Match: A0A067KWM7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10295 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.8e-43
Identity = 91/137 (66.42%), Postives = 111/137 (81.02%), Query Frame = 2

Query: 2   FLANLPSVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 61
           FLANLP+V+GPTP++DI+LS+CL+SD+PT  + K G +   +  GP P TSDLSGSSKS 
Sbjct: 610 FLANLPTVEGPTPNVDIILSICLQSDIPTGQMGKLGTSAVPLPAGPAPATSDLSGSSKSR 669

Query: 62  -AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTG 121
              S SS + +RD+QSGKRK  DRQE++E+ TVQSQPLP+D FRIRQIQK+R  T SQTG
Sbjct: 670 PVLSGSSFQQSRDRQSGKRKGVDRQEEDETATVQSQPLPRDVFRIRQIQKSRVGTVSQTG 729

Query: 122 SASYGSAISGDLSGSTG 181
           SASYGSA+SGDLSGSTG
Sbjct: 730 SASYGSALSGDLSGSTG 746

Query: 182 241
           
Sbjct: 790 746

Query: 242 301
           
Sbjct: 850 746

Query: 302 361
           
Sbjct: 910 746

Query: 362 410
           
Sbjct: 970 746

BLAST of MU54336 vs. TAIR10
Match: AT1G17760.1 (AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 139.4 bits (350), Expect = 3.1e-33
Identity = 79/139 (56.83%), Postives = 98/139 (70.50%), Query Frame = 2

Query: 2   FLANLPSVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 61
           FLANLP VDGPTP++D+VLS+CL+SD PT   VK         G P P+ +D SG ++  
Sbjct: 605 FLANLPIVDGPTPNVDVVLSICLQSDFPTGQTVKQSFA---AKGNP-PSQNDPSGPTRG- 664

Query: 62  AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARG-ATSSQ-- 121
                S +  RD+++ KRKD DRQE++++ TVQSQPLP D FR+RQ++KARG ATSSQ  
Sbjct: 665 ----VSQRLPRDRRATKRKDSDRQEEDDTATVQSQPLPTDVFRLRQMRKARGIATSSQTP 724

Query: 122 TGSASYGSAISGDLSGSTG 181
           TGS SYGSA SG+LSGSTG
Sbjct: 725 TGSTSYGSAFSGELSGSTG 734

Query: 182 241
           
Sbjct: 785 734

Query: 242 301
           
Sbjct: 845 734

Query: 302 361
           
Sbjct: 905 734

Query: 362 410
           
Sbjct: 965 734

BLAST of MU54336 vs. NCBI nr
Match: gi|659082815|ref|XP_008442046.1| (PREDICTED: cleavage stimulation factor subunit 3 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 1.1e-64
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 2

Query: 2   FLANLPSVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 61
           FLANLP+VDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH
Sbjct: 630 FLANLPAVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 689

Query: 62  AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 121
           AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS
Sbjct: 690 AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 749

Query: 122 ASYGSAISGDLSGSTG 181
           ASYGSAISGDLSGSTG
Sbjct: 750 ASYGSAISGDLSGSTG 765

Query: 182 241
           
Sbjct: 810 765

Query: 242 301
           
Sbjct: 870 765

Query: 302 361
           
Sbjct: 930 765

Query: 362 410
           
Sbjct: 990 765

BLAST of MU54336 vs. NCBI nr
Match: gi|778695232|ref|XP_011653953.1| (PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 2.4e-64
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 2

Query: 2   FLANLPSVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 61
           FLANLP+VDGPTPD+DIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH
Sbjct: 630 FLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 689

Query: 62  AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 121
           AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQP+PKDFFRIRQIQKARGATSSQTGS
Sbjct: 690 AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQTGS 749

Query: 122 ASYGSAISGDLSGSTG 181
           ASYGSAISGDLSGSTG
Sbjct: 750 ASYGSAISGDLSGSTG 765

Query: 182 241
           
Sbjct: 810 765

Query: 242 301
           
Sbjct: 870 765

Query: 302 361
           
Sbjct: 930 765

Query: 362 410
           
Sbjct: 990 765

BLAST of MU54336 vs. NCBI nr
Match: gi|700199750|gb|KGN54908.1| (hypothetical protein Csa_4G594420 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 2.4e-64
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 2

Query: 2   FLANLPSVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 61
           FLANLP+VDGPTPD+DIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH
Sbjct: 562 FLANLPAVDGPTPDVDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 621

Query: 62  AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 121
           AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQP+PKDFFRIRQIQKARGATSSQTGS
Sbjct: 622 AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPMPKDFFRIRQIQKARGATSSQTGS 681

Query: 122 ASYGSAISGDLSGSTG 181
           ASYGSAISGDLSGSTG
Sbjct: 682 ASYGSAISGDLSGSTG 697

Query: 182 241
           
Sbjct: 742 697

Query: 242 301
           
Sbjct: 802 697

Query: 302 361
           
Sbjct: 862 697

Query: 362 410
           
Sbjct: 922 697

BLAST of MU54336 vs. NCBI nr
Match: gi|590567770|ref|XP_007010608.1| (Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3 [Theobroma cacao])

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 91/135 (67.41%), Postives = 110/135 (81.48%), Query Frame = 2

Query: 2   FLANLPSVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 61
           FL NLP+++GP P++DIVLS+CL+SDLPT    K  A P+Q + GP P+TSDLSGSSKSH
Sbjct: 620 FLTNLPALEGPKPNVDIVLSICLQSDLPTGQTKKLTALPSQRTTGPAPSTSDLSGSSKSH 679

Query: 62  AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 121
              +SS    RD+  GKRKD DRQE++E+TTVQSQPLP+D FRIRQIQKARG ++SQTGS
Sbjct: 680 PIPSSSSFRPRDRHLGKRKDLDRQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQTGS 739

Query: 122 ASYGSAISGDLSGST 181
            SYGSA+SGDLSGST
Sbjct: 740 VSYGSALSGDLSGST 754

Query: 182 241
           
Sbjct: 800 754

Query: 242 301
           
Sbjct: 860 754

Query: 302 361
           
Sbjct: 920 754

Query: 362 407
           
Sbjct: 980 754

BLAST of MU54336 vs. NCBI nr
Match: gi|590567762|ref|XP_007010606.1| (Tetratricopeptide repeat-like superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 91/135 (67.41%), Postives = 110/135 (81.48%), Query Frame = 2

Query: 2   FLANLPSVDGPTPDIDIVLSVCLESDLPTVPLVKSGATPAQVSGGPVPTTSDLSGSSKSH 61
           FL NLP+++GP P++DIVLS+CL+SDLPT    K  A P+Q + GP P+TSDLSGSSKSH
Sbjct: 626 FLTNLPALEGPKPNVDIVLSICLQSDLPTGQTKKLTALPSQRTTGPAPSTSDLSGSSKSH 685

Query: 62  AFSNSSLKHTRDKQSGKRKDYDRQEDNESTTVQSQPLPKDFFRIRQIQKARGATSSQTGS 121
              +SS    RD+  GKRKD DRQE++E+TTVQSQPLP+D FRIRQIQKARG ++SQTGS
Sbjct: 686 PIPSSSSFRPRDRHLGKRKDLDRQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQTGS 745

Query: 122 ASYGSAISGDLSGST 181
            SYGSA+SGDLSGST
Sbjct: 746 VSYGSALSGDLSGST 760

Query: 182 241
           
Sbjct: 806 760

Query: 242 301
           
Sbjct: 866 760

Query: 302 361
           
Sbjct: 926 760

Query: 362 407
           
Sbjct: 986 760

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CTF77_ARATH5.5e-3256.83Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana GN=CSTF77 PE=1 SV... [more]
Match NameE-valueIdentityDescription
A0A0A0KZK4_CUCSA1.5e-6897.79Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594420 PE=4 SV=1[more]
A0A061FR79_THECC1.3e-4367.41Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3 OS=Theobroma c... [more]
A0A061FQQ9_THECC1.3e-4367.41Tetratricopeptide repeat-like superfamily protein isoform 1 OS=Theobroma cacao G... [more]
A0A0D2VLE3_GOSRA2.8e-4365.93Uncharacterized protein OS=Gossypium raimondii GN=B456_N006700 PE=4 SV=1[more]
A0A067KWM7_JATCU2.8e-4366.42Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10295 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G17760.13.1e-3356.83 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659082815|ref|XP_008442046.1|1.1e-6499.26PREDICTED: cleavage stimulation factor subunit 3 [Cucumis melo][more]
gi|778695232|ref|XP_011653953.1|2.4e-6497.79PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis sativus][more]
gi|700199750|gb|KGN54908.1|2.4e-6497.79hypothetical protein Csa_4G594420 [Cucumis sativus][more]
gi|590567770|ref|XP_007010608.1|2.1e-3967.41Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3 [Theobroma cac... [more]
gi|590567762|ref|XP_007010606.1|2.1e-3967.41Tetratricopeptide repeat-like superfamily protein isoform 1 [Theobroma cacao][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
MELO3C008873MELO3C008873gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
AI06B05AI06B05EST
SSH6I13SSH6I13EST