MU54082 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU54082
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Photosynthetic NDH subcomplex L 2
Location	chr6 : 680271 .. 681204 (+)
Sequence length	794

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAAGGCCAGAAAGTGTGTGTGTGTGTGTATGTTCTCCCAAATGGCGAAATGAATGGTAAGAAGCCAAAAGTACATCCAAAGCCATGCCTACCCTTCTTGCCAACGCCAACAGTACTCTCTTCTCCTCTCCCATTTCCACTCCCCACAAATCCCTCCACCGCCGCCACTTCCCCATCATCACCGCCTCCCTTCCCATCCACCGTCGCCATATCGCCACAACCCTTGCAGTGGTGATTGGGTTGCAAGCTGCAACACCCCTCGCGCTAGCCCAAAGTTGGGGTACACACTCGTTCATTAAGGAGCGATACTTCGAGCCCGGTTTGTCGGCCGATGAGGCAGTGGCGAGGATAAAACAGACGGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACCACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTACCTCTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCAAAACGATTTCGTTAAAACCGCTAACGAGTTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTATGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCTTAGAGATGTAAATAAAATAATTAATATCAAATGTTCTTCATCCCACAAAATTGAATGCATCAAATTTGTAGATTTGTGTTATTGATTTAAGATTTCTGTAGTCTTTTACTTCATTAGTTAATTATATTAATTCATGTGTAAAAAATTATTTTA

Library


Library category	ESTs
melon MNFG2 library	2
melon CI library	3
melon HS library	1

Homology

[Close]

BLAST of MU54082 vs. Swiss-Prot
Match: PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.5e-50
Identity = 101/148 (68.24%), Postives = 116/148 (78.38%), Query Frame = 3


Query: 201 RRHIATTLAVVIGLQAATPLALAQS-WGTHSFIKERYFEPGLSADEAVARIKQTAEGLHS 260
           RR   T+L     +  AT  ALAQ  WGT SFIKE+YF PGLS ++A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 261 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYY 320
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++R+ND+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 321 VRTPKVYESYLYYEKTLKSIDDLVALLA 380
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

Query: 381  440
           
Sbjct: 223  190

Query: 441  500
           
Sbjct: 283  190

Query: 501  560
           
Sbjct: 343  190

Query: 561  620
           
Sbjct: 403  190

Query: 621  642
           
Sbjct: 463  190

[Close]

BLAST of MU54082 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.6e-10
Identity = 32/115 (27.83%), Postives = 64/115 (55.65%), Query Frame = 3


Query: 294 IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 353
           +KER++   L   EAVAR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 98  LKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 157

Query: 354 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 413
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 158 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

Query: 414  473
           
Sbjct: 218  212

Query: 474  533
           
Sbjct: 278  212

Query: 534  593
           
Sbjct: 338  212

Query: 594  639
           
Sbjct: 398  212

[Close]

BLAST of MU54082 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 6.0e-10
Identity = 32/115 (27.83%), Postives = 64/115 (55.65%), Query Frame = 3


Query: 294 IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 353
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 354 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 413
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

Query: 414  473
           
Sbjct: 235  229

Query: 474  533
           
Sbjct: 295  229

Query: 534  593
           
Sbjct: 355  229

Query: 594  639
           
Sbjct: 415  229

[Close]

BLAST of MU54082 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-09
Identity = 31/115 (26.96%), Postives = 63/115 (54.78%), Query Frame = 3


Query: 294 IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 353
           +KER++   L   EA AR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 354 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 413
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

Query: 414  473
           
Sbjct: 222  216

Query: 474  533
           
Sbjct: 282  216

Query: 534  593
           
Sbjct: 342  216

Query: 594  639
           
Sbjct: 402  216

[Close]

BLAST of MU54082 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-09
Identity = 30/115 (26.09%), Postives = 64/115 (55.65%), Query Frame = 3


Query: 294 IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 353
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 354 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 413
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

Query: 414  473
           
Sbjct: 229  223

Query: 474  533
           
Sbjct: 289  223

Query: 534  593
           
Sbjct: 349  223

Query: 594  639
           
Sbjct: 409  223

[Close]

BLAST of MU54082 vs. TrEMBL
Match: A0A0A0L3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 9.1e-90
Identity = 176/188 (93.62%), Postives = 182/188 (96.81%), Query Frame = 3


Query: 84  MPTLLANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPL 143
           MPTL ANAN +TLFSS ISTPHKS HR HFP+ITASLPIHRRHIATTLA+V+GLQAATPL
Sbjct: 1   MPTL-ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPL 60

Query: 144 -ALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 203
            ALAQSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK
Sbjct: 61  VALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120

Query: 204 SAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 263
           SAYLSQDLKTAMTTLPQAR+NDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI
Sbjct: 121 SAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180

Query: 264 DDLVALLA 323
           DDLVALLA
Sbjct: 181 DDLVALLA 187

Query: 324  383
           
Sbjct: 241  187

Query: 384  443
           
Sbjct: 301  187

Query: 444  503
           
Sbjct: 361  187

Query: 504  563
           
Sbjct: 421  187

Query: 564  623
           
Sbjct: 481  187

Query: 624  642
           
Sbjct: 541  187

[Close]

BLAST of MU54082 vs. TrEMBL
Match: D7TN65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.7e-57
Identity = 125/185 (67.57%), Postives = 139/185 (75.14%), Query Frame = 3


Query: 120 FSSPISTPHKSL----HRRH--FPIITASL-----PIHRRHIATTLAVVIGLQAATPLAL 179
           F+SP S     L    H R    P   ASL     PI RR I +TL         TPLAL
Sbjct: 4   FTSPTSLSCAQLTTAQHGRSPSLPATRASLSGEETPILRRRIVSTLLATSLALHGTPLAL 63

Query: 180 AQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAY 239
           A++WGT SF+KER+FEPGLS ++AVARI+QTAEGLHSIR MLET SWRYVIFYIRLKSAY
Sbjct: 64  AENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAY 123

Query: 240 LSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 299
           LSQDLK AMTTLP++R+  +   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDL
Sbjct: 124 LSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDL 183

Query: 300 VALLA 359
           VA+LA
Sbjct: 184 VAMLA 188

Query: 360  419
           
Sbjct: 244  188

Query: 420  479
           
Sbjct: 304  188

Query: 480  539
           
Sbjct: 364  188

Query: 540  599
           
Sbjct: 424  188

Query: 600  642
           
Sbjct: 484  188

[Close]

BLAST of MU54082 vs. TrEMBL
Match: A0A0F7GYP0_9ROSI (Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.7e-57
Identity = 123/185 (66.49%), Postives = 144/185 (77.84%), Query Frame = 3


Query: 111 STLFSSPISTPHKSLHRRHFPIITASLPIH-----RRHIATTLAVV----IGLQAATPLA 170
           STL     STP K       PII +SLP+      RR I +TL       IGL A TPLA
Sbjct: 8   STLLRLQTSTPRKP----SLPIIRSSLPVEENAIIRRRILSTLFTTSMGTIGLNA-TPLA 67

Query: 171 LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 230
           LA++WG+ SF+ ERYFEPGLS ++AVARI+QTAEGLHS+REML+T SWRYV+FYIRLKSA
Sbjct: 68  LAENWGSRSFLLERYFEPGLSPEDAVARIRQTAEGLHSMREMLDTMSWRYVMFYIRLKSA 127

Query: 231 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 290
           YL+QDLK AM+TLPQ R+  +VKTANEL+DNMAE DYYVRTPKVYESYLYYEKTLKS+D+
Sbjct: 128 YLNQDLKNAMSTLPQTRRPAYVKTANELIDNMAEFDYYVRTPKVYESYLYYEKTLKSLDE 187

Query: 291 LVALL 350
           +V LL
Sbjct: 188 IVTLL 187

Query: 351  410
           
Sbjct: 248  187

Query: 411  470
           
Sbjct: 308  187

Query: 471  530
           
Sbjct: 368  187

Query: 531  590
           
Sbjct: 428  187

Query: 591  639
           
Sbjct: 488  187

[Close]

BLAST of MU54082 vs. TrEMBL
Match: M5Y597_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011707mg PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.7e-56
Identity = 121/195 (62.05%), Postives = 143/195 (73.33%), Query Frame = 3


Query: 102 NANSTLFSSPISTPHKSLHRRHFPIITASLP---------IHRRHIATTL---AVVIGLQ 161
           N  +T   + I+ P   L +   P I ASLP           RR I T+    ++ +G+ 
Sbjct: 6   NTTTTFLHAQITKPQNYLCKISLPAIKASLPGAEEEENNATSRRKIVTSFLGTSLALGVH 65

Query: 162 A---ATPLALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYV 221
               ATPL LA++WGT SFI+ER+FEPGLS ++AVARIKQTAEGLHSIR+MLE  +WRYV
Sbjct: 66  QHGIATPLGLAENWGTRSFIRERFFEPGLSPEDAVARIKQTAEGLHSIRDMLEAMAWRYV 125

Query: 222 IFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYY 281
           IFYIRLKSAYLSQDLK A T +P  R+ ++VKTANELV+NM E DYYVRTPKVYESYLYY
Sbjct: 126 IFYIRLKSAYLSQDLKNAATLVPDVRRQEYVKTANELVNNMTEFDYYVRTPKVYESYLYY 185

Query: 282 EKTLKSIDDLVALLA 341
           EKTLKSIDDLVALLA
Sbjct: 186 EKTLKSIDDLVALLA 200

Query: 342  401
           
Sbjct: 246  200

Query: 402  461
           
Sbjct: 306  200

Query: 462  521
           
Sbjct: 366  200

Query: 522  581
           
Sbjct: 426  200

Query: 582  641
           
Sbjct: 486  200

[Close]

BLAST of MU54082 vs. TrEMBL
Match: A0A0D2SAU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 6.6e-56
Identity = 122/193 (63.21%), Postives = 143/193 (74.09%), Query Frame = 3


Query: 108 NSTLF---SSPISTPHKS-LHRRHFPIITASLP--------IHRRHIATTLAVV----IG 167
           NST F   +    TP      R   PII AS           +RR + TT        +G
Sbjct: 6   NSTFFIHVNQKFPTPQSHHCSRLSLPIIRASFQPQQNNVIISNRRKLVTTFLATSLAALG 65

Query: 168 LQAATPLALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVI 227
           L   TP+A+A++WGTHSF++ER+FEPGLS ++A ARIKQTAEGLHS+R+ML+T SWRYV+
Sbjct: 66  LNG-TPVAVAENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMSWRYVM 125

Query: 228 FYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYE 287
           FYIRLK AYLSQDLK AM+TLPQ R++ +VKTANELVDNMAE DYYVRTPKVYESYLYYE
Sbjct: 126 FYIRLKQAYLSQDLKNAMSTLPQGRKDKYVKTANELVDNMAEFDYYVRTPKVYESYLYYE 185

Query: 288 KTLKSIDDLVALL 347
           KTLKSIDDLVALL
Sbjct: 186 KTLKSIDDLVALL 197

Query: 348  407
           
Sbjct: 246  197

Query: 408  467
           
Sbjct: 306  197

Query: 468  527
           
Sbjct: 366  197

Query: 528  587
           
Sbjct: 426  197

Query: 588  639
           
Sbjct: 486  197

[Close]

BLAST of MU54082 vs. TAIR10
Match: AT1G14150.1 (AT1G14150.1 PsbQ-like 2)

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-51
Identity = 101/148 (68.24%), Postives = 116/148 (78.38%), Query Frame = 3


Query: 201 RRHIATTLAVVIGLQAATPLALAQS-WGTHSFIKERYFEPGLSADEAVARIKQTAEGLHS 260
           RR   T+L     +  AT  ALAQ  WGT SFIKE+YF PGLS ++A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 261 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYY 320
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++R+ND+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 321 VRTPKVYESYLYYEKTLKSIDDLVALLA 380
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

Query: 381  440
           
Sbjct: 223  190

Query: 441  500
           
Sbjct: 283  190

Query: 501  560
           
Sbjct: 343  190

Query: 561  620
           
Sbjct: 403  190

Query: 621  642
           
Sbjct: 463  190

[Close]

BLAST of MU54082 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2)

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-11
Identity = 32/115 (27.83%), Postives = 64/115 (55.65%), Query Frame = 3


Query: 294 IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 353
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 354 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 413
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

Query: 414  473
           
Sbjct: 235  229

Query: 474  533
           
Sbjct: 295  229

Query: 534  593
           
Sbjct: 355  229

Query: 594  639
           
Sbjct: 415  229

[Close]

BLAST of MU54082 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA)

HSP 1 Score: 64.7 bits (156), Expect = 9.8e-11
Identity = 30/115 (26.09%), Postives = 64/115 (55.65%), Query Frame = 3


Query: 294 IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 353
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 354 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 413
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

Query: 414  473
           
Sbjct: 229  223

Query: 474  533
           
Sbjct: 289  223

Query: 534  593
           
Sbjct: 349  223

Query: 594  639
           
Sbjct: 409  223

[Close]

BLAST of MU54082 vs. TAIR10
Match: AT3G01440.1 (AT3G01440.1 PsbQ-like 1)

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06
Identity = 29/121 (23.97%), Postives = 57/121 (47.11%), Query Frame = 3


Query: 279 GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 338
           GT +FIK+  +   +     + R+K+ A  L ++ +++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 339 LKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 398
               ++      +      AN L DN  +L+   +T  + E+   Y+ T   + +++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 399 A 458
           A
Sbjct: 220 A 220

Query: 459  518
           
Sbjct: 280  220

Query: 519  578
           
Sbjct: 340  220

Query: 579  638
           
Sbjct: 400  220

Query: 639  642
           
Sbjct: 460  220

[Close]

BLAST of MU54082 vs. NCBI nr
Match: gi|659075001|ref|XP_008437911.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 365.5 bits (937), Expect = 7.6e-98
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 3


Query: 84  MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 143
           MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA
Sbjct: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60

Query: 144 LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 203
           LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA
Sbjct: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120

Query: 204 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 263
           YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD
Sbjct: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180

Query: 264 LVALLA 323
           LVALLA
Sbjct: 181 LVALLA 186

Query: 324  383
           
Sbjct: 241  186

Query: 384  443
           
Sbjct: 301  186

Query: 444  503
           
Sbjct: 361  186

Query: 504  563
           
Sbjct: 421  186

Query: 564  623
           
Sbjct: 481  186

Query: 624  642
           
Sbjct: 541  186

[Close]

BLAST of MU54082 vs. NCBI nr
Match: gi|449432058|ref|XP_004133817.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 1.1e-88
Identity = 176/188 (93.62%), Postives = 182/188 (96.81%), Query Frame = 3


Query: 84  MPTLLANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPL 143
           MPTL ANAN +TLFSS ISTPHKS HR HFP+ITASLPIHRRHIATTLA+V+GLQAATPL
Sbjct: 1   MPTL-ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPL 60

Query: 144 -ALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 203
            ALAQSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK
Sbjct: 61  VALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120

Query: 204 SAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 263
           SAYLSQDLKTAMTTLPQAR+NDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI
Sbjct: 121 SAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180

Query: 264 DDLVALLA 323
           DDLVALLA
Sbjct: 181 DDLVALLA 187

Query: 324  383
           
Sbjct: 241  187

Query: 384  443
           
Sbjct: 301  187

Query: 444  503
           
Sbjct: 361  187

Query: 504  563
           
Sbjct: 421  187

Query: 564  623
           
Sbjct: 481  187

Query: 624  642
           
Sbjct: 541  187

[Close]

BLAST of MU54082 vs. NCBI nr
Match: gi|1009154202|ref|XP_015895040.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 229.2 bits (583), Expect = 8.5e-57
Identity = 129/193 (66.84%), Postives = 143/193 (74.09%), Query Frame = 3


Query: 114 TLFSSPIST---PHKSLHRRHFPIITASLP------IHRRHIATTLAV----VIGLQ--- 173
           T F + I+T   P      R FP I AS          RR I TT       + GLQ   
Sbjct: 2   TNFLTQITTLLCPQHCCRARAFPSIRASFQNEENTTCSRRKIVTTFVASSVALTGLQYQV 61

Query: 174 -AATPLALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIF 233
              TP ALAQ+WGT SFI+ER+FEPGLS ++AVARIKQTAEGLHSIR+MLE+ SWRYVIF
Sbjct: 62  IMKTPDALAQNWGTRSFIRERFFEPGLSPEDAVARIKQTAEGLHSIRDMLESMSWRYVIF 121

Query: 234 YIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEK 293
           YIRLKSAYLSQDLK AMTTLP+AR+ D+ K ANELVDNMAE DYYVRTPKVYESY+YYEK
Sbjct: 122 YIRLKSAYLSQDLKNAMTTLPEARRQDYAKVANELVDNMAEFDYYVRTPKVYESYVYYEK 181

Query: 294 TLKSIDDLVALLA 353
           TLKSIDDLVALLA
Sbjct: 182 TLKSIDDLVALLA 194

Query: 354  413
           
Sbjct: 242  194

Query: 414  473
           
Sbjct: 302  194

Query: 474  533
           
Sbjct: 362  194

Query: 534  593
           
Sbjct: 422  194

Query: 594  642
           
Sbjct: 482  194

[Close]

BLAST of MU54082 vs. NCBI nr
Match: gi|720007404|ref|XP_010258294.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 119/185 (64.32%), Postives = 145/185 (78.38%), Query Frame = 3


Query: 111 STLFSSPISTPHKSLHRRHFPIITASL-----PIHRRHIATTL---AVVIGLQAATPLAL 170
           + L+   +    K    R F  I AS      P+HRR + +T    ++ +GLQA TP+AL
Sbjct: 8   TALYHRHMPQTFKGRQSRSFSTIRASSIGEENPVHRRKVVSTFLTASLALGLQA-TPIAL 67

Query: 171 AQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAY 230
           A++WGT SFIKER+FEPGLS+++AVARI+QTAEGLHSIR MLET SWRYV+FYIRLK+AY
Sbjct: 68  AENWGTRSFIKERFFEPGLSSEDAVARIRQTAEGLHSIRGMLETMSWRYVLFYIRLKTAY 127

Query: 231 LSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 290
           LSQDLK  +T +P+ R + +VKTANELVDNMAE DYYVRTPKVYESYLYYEKTLKS+DDL
Sbjct: 128 LSQDLKNVLTIMPENRLDSYVKTANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSMDDL 187

Query: 291 VALLA 350
           VA+LA
Sbjct: 188 VAMLA 191

Query: 351  410
           
Sbjct: 248  191

Query: 411  470
           
Sbjct: 308  191

Query: 471  530
           
Sbjct: 368  191

Query: 531  590
           
Sbjct: 428  191

Query: 591  642
           
Sbjct: 488  191

[Close]

BLAST of MU54082 vs. NCBI nr
Match: gi|225425642|ref|XP_002272064.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera])

HSP 1 Score: 227.6 bits (579), Expect = 2.5e-56
Identity = 125/185 (67.57%), Postives = 139/185 (75.14%), Query Frame = 3


Query: 120 FSSPISTPHKSL----HRRH--FPIITASL-----PIHRRHIATTLAVVIGLQAATPLAL 179
           F+SP S     L    H R    P   ASL     PI RR I +TL         TPLAL
Sbjct: 4   FTSPTSLSCAQLTTAQHGRSPSLPATRASLSGEETPILRRRIVSTLLATSLALHGTPLAL 63

Query: 180 AQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAY 239
           A++WGT SF+KER+FEPGLS ++AVARI+QTAEGLHSIR MLET SWRYVIFYIRLKSAY
Sbjct: 64  AENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAY 123

Query: 240 LSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 299
           LSQDLK AMTTLP++R+  +   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDL
Sbjct: 124 LSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDL 183

Query: 300 VALLA 359
           VA+LA
Sbjct: 184 VAMLA 188

Query: 360  419
           
Sbjct: 244  188

Query: 420  479
           
Sbjct: 304  188

Query: 480  539
           
Sbjct: 364  188

Query: 540  599
           
Sbjct: 424  188

Query: 600  642
           
Sbjct: 484  188

The following BLAST results are available for this feature:

BLAST of MU54082 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PNSL2_ARATH	3.5e-50	68.24	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
PSBQ2_MAIZE	4.6e-10	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV...	[more]
PSBQ2_ARATH	6.0e-10	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ1_MAIZE	1.3e-09	26.96	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV...	[more]
PSBQ1_ARATH	1.7e-09	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]

BLAST of MU54082 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3W3_CUCSA	9.1e-90	93.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1	[more]
D7TN65_VITVI	2.7e-57	67.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=...	[more]
A0A0F7GYP0_9ROSI	2.7e-57	66.49	Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1	[more]
M5Y597_PRUPE	1.7e-56	62.05	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011707mg PE=4 SV=1	[more]
A0A0D2SAU6_GOSRA	6.6e-56	63.21	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1	[more]

BLAST of MU54082 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14150.1	1.9e-51	68.24	PsbQ-like 2	[more]
AT4G05180.1	3.4e-11	27.83	photosystem II subunit Q-2	[more]
AT4G21280.2	9.8e-11	26.09	photosystem II subunit QA	[more]
AT3G01440.1	1.5e-06	23.97	PsbQ-like 1	[more]

BLAST of MU54082 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075001\|ref\|XP_008437911.1\|	7.6e-98	100.00	PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo]	[more]
gi\|449432058\|ref\|XP_004133817.1\|	1.1e-88	93.62	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucu...	[more]
gi\|1009154202\|ref\|XP_015895040.1\|	8.5e-57	66.84	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Zizi...	[more]
gi\|720007404\|ref\|XP_010258294.1\|	1.1e-56	64.32	PREDICTED: psbQ-like protein 1, chloroplastic [Nelumbo nucifera]	[more]
gi\|225425642\|ref\|XP_002272064.1\|	2.5e-56	67.57	PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR008797	PSII_PsbQ
IPR023222	PsbQ-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
molecular_function	GO:0005509	calcium ion binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006032	MELO3C006032	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
BA22YN22FM1	BA22YN22FM1	EST
BA9YF05FM1	BA9YF05FM1	EST
CI11B08	CI11B08	EST
CI25C12	CI25C12	EST
CI45A11	CI45A11	EST
HS02C10	HS02C10	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 84..214 score: 2.0
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 80..214 score: 2.3
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 104..214 score: 9.02
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 55..214 score: 1.8
None	No IPR available	PANTHER	PTHR33399:SF5	PSBQ-LIKE PROTEIN 1, CHLOROPLASTIC	coord: 55..214 score: 1.8