MU53084 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU53084
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA-directed RNA polymerase subunit beta
Location	chr3 : 24190794 .. 24199120 (-)
Sequence length	690

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAATAAACGTTGTCTTCTCTCAATCAGTCGCTAGCTCCGACGCCGGCGAAGAAGATGGTGGTGAAATTTAAAGAGAACGAAGACTATGAGGCGTTGCGCGAGCTGTTCAGACACCATATAGAATCGTTTGATCACCTCGTCGATGCCGGATTGGAGACACTTATGAACAGCATCAAACCCGTCGAAATTTACGACTCATTCACCAACAAAAAGCTTAGAATTTGGCTGGGTAAGCCTGAGTTATACCCACCACAGAAGGAGCGCAATTTGAGAACAATACGGGAAGCTCTTCTTCCTTATGAATGTAGGCAAGCTAAAATTTCATATACCGGAAAGTTCATGGCAGATGTTTGTTTTCAATACGATGAAAAAGCTGTCATAAGAGAGAAGTTTAACTTTGGGCAATTTCCGATAATGCTGAAGTCAAAGCTTTGTCACTTGAGAGGTCTTGATCCCAAGAAGTTGGTCTCCTACAACGAAGAGGCATCAGAAATGGGTGGTTATTTCGTTATGAATGGGTTGGAGAGAGTTGTTCGGCTTTTGATAGCACCCAAACGAAACTATCCAATGAGCATGGTGAGGAATTCATTTTCTGATCGACGGGAAGGTTATACTGATAAGGCAGTGGTTATAAGGTGTGTAAGAGAAGATCAATCTTCAGTAACAGTCAAATTATATTATCTTAGGAAT

Library


Library category	ESTs
melon CM-Dea library	1
melon CM-TEa library	1

Homology

[Close]

BLAST of MU53084 vs. Swiss-Prot
Match: NRPA2_ARATH (DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana GN=NRPA2 PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 4.8e-72
Identity = 134/218 (61.47%), Postives = 163/218 (74.77%), Query Frame = 1


Query: 55  MVVKFKEN-----EDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLR 114
           MVV  K++     ED++ L  L  HHIESFD++   GL+ + N IKPV +YD  T  +L 
Sbjct: 1   MVVNAKDSTVPTMEDFKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSVYDPNTENELS 60

Query: 115 IWLGKPELYPPQKERNLRTIR-EALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFN 174
           IWL  P ++ PQKE    T R E LLP+ECRQAKISYTG FMADVCF+Y++  V+R+KF+
Sbjct: 61  IWLENPLVFAPQKESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFD 120

Query: 175 FGQFPIMLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSM 234
           FGQFPIML SKLC L+G D +KL+   E  SEMGGYF++NG+ERV R +IAPKRN+P SM
Sbjct: 121 FGQFPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSM 180

Query: 235 VRNSFSDRREGYTDKAVVIRCVREDQSSVTVKLYYLRN 294
           +RNSF DR+EGY+ KAVV RCVR+DQSSVTVKLYYLRN
Sbjct: 181 IRNSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYYLRN 218

Query: 295  354
           
Sbjct: 241  218

Query: 355  414
           
Sbjct: 301  218

Query: 415  474
           
Sbjct: 361  218

Query: 475  534
           
Sbjct: 421  218

Query: 535  594
           
Sbjct: 481  218

Query: 595  654
           
Sbjct: 541  218

Query: 655  691
           
Sbjct: 601  218

[Close]

BLAST of MU53084 vs. Swiss-Prot
Match: RPA2_HUMAN (DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B PE=1 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 6.5e-37
Identity = 80/202 (39.60%), Postives = 124/202 (61.39%), Query Frame = 1


Query: 91  ALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERNL 150
           AL+EL R H+ESF++ V  GL   + +I P E   +F ++++   +    + PP   +  
Sbjct: 34  ALQELTRAHVESFNYAVHEGLGLAVQAIPPFEF--AFKDERISFTILDAVISPPTVPKGT 93

Query: 151 RTIREALLPYECRQAKISYTGKFMADVCFQYD--EKAVIREKFNFGQFPIMLKSKLCHLR 210
                 + P ECR  + +Y GK  AD+ +  +   K +I++    G  PIM+KSKLC+LR
Sbjct: 94  ICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLR 153

Query: 211 GLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFSDRREGYTDKA 270
            L P+ L+ ++EEA EMGGYF++NG+E+V+R+LI P+RN+P++M+R  +  R  GYT   
Sbjct: 154 NLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYG 213

Query: 271 VVIRCVREDQSSVTVKLYYLRN 330
           V + CVRE+ S+V + L+YL N
Sbjct: 214 VSMHCVREEHSAVNMNLHYLEN 231

Query: 331  390
           
Sbjct: 274  231

Query: 391  450
           
Sbjct: 334  231

Query: 451  510
           
Sbjct: 394  231

Query: 511  570
           
Sbjct: 454  231

Query: 571  630
           
Sbjct: 514  231

Query: 631  690
           
Sbjct: 574  231

[Close]

BLAST of MU53084 vs. Swiss-Prot
Match: RPA2_PONAB (DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-36
Identity = 80/202 (39.60%), Postives = 124/202 (61.39%), Query Frame = 1


Query: 91  ALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERNL 150
           AL+EL R H+ESF++ V  GL   + +I P E   +F ++++   +    + PP   +  
Sbjct: 34  ALQELTRAHVESFNYAVHEGLGLAVQAIPPFEF--AFKDERISFTILDAVISPPTVPKGT 93

Query: 151 RTIREALLPYECRQAKISYTGKFMADVCFQYD--EKAVIREKFNFGQFPIMLKSKLCHLR 210
                ++ P ECR  + +Y GK  AD+ +  +   K +I++    G  PIM+KSKLC+L 
Sbjct: 94  ICKEVSVYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQFL--GYVPIMVKSKLCNLY 153

Query: 211 GLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFSDRREGYTDKA 270
            L P+ L+ ++EEA EMGGYF++NG+E+V+R+LI P+RN+P++MVR  +  R  GYT   
Sbjct: 154 NLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHYG 213

Query: 271 VVIRCVREDQSSVTVKLYYLRN 330
           V + CVRE+ S+V + L+YL N
Sbjct: 214 VSMHCVREEHSAVNMNLHYLEN 231

Query: 331  390
           
Sbjct: 274  231

Query: 391  450
           
Sbjct: 334  231

Query: 451  510
           
Sbjct: 394  231

Query: 511  570
           
Sbjct: 454  231

Query: 571  630
           
Sbjct: 514  231

Query: 631  690
           
Sbjct: 574  231

[Close]

BLAST of MU53084 vs. Swiss-Prot
Match: RPA2_RAT (DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus GN=Polr1b PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.7e-35
Identity = 77/202 (38.12%), Postives = 124/202 (61.39%), Query Frame = 1


Query: 91  ALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERNL 150
           AL++L R H++SF++ V  GL   + +I P E   +F ++++ + +    + PP   +  
Sbjct: 34  ALQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEF--AFKDERISLTIVDAAISPPAVPKGT 93

Query: 151 RTIREALLPYECRQAKISYTGKFMADVCFQYD--EKAVIREKFNFGQFPIMLKSKLCHLR 210
                 + P ECR  + +Y GK  AD+ +  +   K +I++    G  PIM+KSKLC+L 
Sbjct: 94  ICKELNIYPAECRGRRSTYRGKLTADISWAVNGVPKGIIKQFL--GXVPIMVKSKLCNLY 153

Query: 211 GLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFSDRREGYTDKA 270
            L P+ L+ ++EEA EMGGYF++NG+E+V+R+LI P+RN+P++M+R  +  R  GYT   
Sbjct: 154 NLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQFG 213

Query: 271 VVIRCVREDQSSVTVKLYYLRN 330
           V I CVRE+ S+V + L+Y+ N
Sbjct: 214 VSIHCVREEHSAVNMNLHYVEN 231

Query: 331  390
           
Sbjct: 274  231

Query: 391  450
           
Sbjct: 334  231

Query: 451  510
           
Sbjct: 394  231

Query: 511  570
           
Sbjct: 454  231

Query: 571  630
           
Sbjct: 514  231

Query: 631  690
           
Sbjct: 574  231

[Close]

BLAST of MU53084 vs. Swiss-Prot
Match: RPA2_MOUSE (DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b PE=1 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 4.7e-35
Identity = 77/202 (38.12%), Postives = 124/202 (61.39%), Query Frame = 1


Query: 91  ALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERNL 150
           AL++L R H++SF++    GL   + +I P E   +F ++++ + +    + PP   +  
Sbjct: 34  ALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEF--AFKDERISLTIVDAVISPPSVPKGT 93

Query: 151 RTIREALLPYECRQAKISYTGKFMADVCFQYD--EKAVIREKFNFGQFPIMLKSKLCHLR 210
                 + P ECR  K +Y G+  AD+ +  +   K +I++    G  PIM+KSKLC+L 
Sbjct: 94  ICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFL--GYVPIMVKSKLCNLY 153

Query: 211 GLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFSDRREGYTDKA 270
            L P+ L+ ++EEA EMGGYF++NG+E+V+R+LI P+RN+P++MVR  +  R  GYT   
Sbjct: 154 NLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFG 213

Query: 271 VVIRCVREDQSSVTVKLYYLRN 330
           V +RCVRE+ S+V + L+Y+ N
Sbjct: 214 VSMRCVREEHSAVNMNLHYVEN 231

Query: 331  390
           
Sbjct: 274  231

Query: 391  450
           
Sbjct: 334  231

Query: 451  510
           
Sbjct: 394  231

Query: 511  570
           
Sbjct: 454  231

Query: 571  630
           
Sbjct: 514  231

Query: 631  690
           
Sbjct: 574  231

[Close]

BLAST of MU53084 vs. TrEMBL
Match: I1M0N3_SOYBN (DNA-directed RNA polymerase subunit beta OS=Glycine max PE=3 SV=2)

HSP 1 Score: 340.5 bits (872), Expect = 1.6e-90
Identity = 163/213 (76.53%), Postives = 187/213 (87.79%), Query Frame = 1


Query: 52  KMVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLG 111
           KMV K     D+EALRELF+HHIESFD++VDAGL+T++  IKPVE++D FT+ KLRIWL 
Sbjct: 51  KMVAKPGSVPDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLD 110

Query: 112 KPELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFP 171
            P LYPPQKER  RT+REALLP+ECRQAKISY+GK   DVCFQY++  +IRE  NFGQFP
Sbjct: 111 NPVLYPPQKERISRTMREALLPFECRQAKISYSGKITIDVCFQYNDGPIIRENVNFGQFP 170

Query: 172 IMLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSF 231
           IML+SKLC+LRG DP+KLVSY EEASEMGGYF++NGLERVVRLLI PKRNYPMSMVRNSF
Sbjct: 171 IMLQSKLCNLRGADPQKLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSF 230

Query: 232 SDRREGYTDKAVVIRCVREDQSSVTVKLYYLRN 291
           SDRREGYTDKAVVIRCVR DQSS++V+LYYLRN
Sbjct: 231 SDRREGYTDKAVVIRCVRADQSSLSVRLYYLRN 263

Query: 292  351
           
Sbjct: 291  263

Query: 352  411
           
Sbjct: 351  263

Query: 412  471
           
Sbjct: 411  263

Query: 472  531
           
Sbjct: 471  263

Query: 532  591
           
Sbjct: 531  263

Query: 592  651
           
Sbjct: 591  263

Query: 652  691
           
Sbjct: 651  263

[Close]

BLAST of MU53084 vs. TrEMBL
Match: A0A0R0GQW5_SOYBN (DNA-directed RNA polymerase subunit beta OS=Glycine max GN=GLYMA_13G192600 PE=3 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 6.0e-90
Identity = 162/212 (76.42%), Postives = 186/212 (87.74%), Query Frame = 1


Query: 55  MVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 114
           MV K     D+EALRELF+HHIESFD++VDAGL+T++  IKPVE++D FT+ KLRIWL  
Sbjct: 1   MVAKPGSVPDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDN 60

Query: 115 PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 174
           P LYPPQKER  RT+REALLP+ECRQAKISY+GK   DVCFQY++  +IRE  NFGQFPI
Sbjct: 61  PVLYPPQKERISRTMREALLPFECRQAKISYSGKITIDVCFQYNDGPIIRENVNFGQFPI 120

Query: 175 MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFS 234
           ML+SKLC+LRG DP+KLVSY EEASEMGGYF++NGLERVVRLLI PKRNYPMSMVRNSFS
Sbjct: 121 MLQSKLCNLRGADPQKLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFS 180

Query: 235 DRREGYTDKAVVIRCVREDQSSVTVKLYYLRN 294
           DRREGYTDKAVVIRCVR DQSS++V+LYYLRN
Sbjct: 181 DRREGYTDKAVVIRCVRADQSSLSVRLYYLRN 212

Query: 295  354
           
Sbjct: 241  212

Query: 355  414
           
Sbjct: 301  212

Query: 415  474
           
Sbjct: 361  212

Query: 475  534
           
Sbjct: 421  212

Query: 535  594
           
Sbjct: 481  212

Query: 595  654
           
Sbjct: 541  212

Query: 655  691
           
Sbjct: 601  212

[Close]

BLAST of MU53084 vs. TrEMBL
Match: A0A0B2RSS0_GLYSO (DNA-directed RNA polymerase subunit beta OS=Glycine soja GN=glysoja_043959 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.8e-89
Identity = 159/212 (75.00%), Postives = 185/212 (87.26%), Query Frame = 1


Query: 55  MVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 114
           MVVK     D+EALRELF+HHIESFD++ DAGLET++  IKP+E++D FT+ KLRIWL  
Sbjct: 1   MVVKQGSIPDFEALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLRIWLDN 60

Query: 115 PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 174
           P LYPPQKER  RT+REALLP+ECRQAKISY GK   DVCFQY++  +IRE  NFGQFPI
Sbjct: 61  PVLYPPQKERISRTMREALLPFECRQAKISYAGKITIDVCFQYNDGPIIRENINFGQFPI 120

Query: 175 MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFS 234
           ML+SKLC+LRG DP+KLVSY EEASEMGGYF++NGLERV+RLLI PKRN+PMSMVRNSFS
Sbjct: 121 MLQSKLCNLRGADPQKLVSYREEASEMGGYFILNGLERVIRLLILPKRNHPMSMVRNSFS 180

Query: 235 DRREGYTDKAVVIRCVREDQSSVTVKLYYLRN 294
           DRREGYTDKA+VIRCVR DQSS++V+LYYLRN
Sbjct: 181 DRREGYTDKAIVIRCVRADQSSLSVRLYYLRN 212

Query: 295  354
           
Sbjct: 241  212

Query: 355  414
           
Sbjct: 301  212

Query: 415  474
           
Sbjct: 361  212

Query: 475  534
           
Sbjct: 421  212

Query: 535  594
           
Sbjct: 481  212

Query: 595  654
           
Sbjct: 541  212

Query: 655  691
           
Sbjct: 601  212

[Close]

BLAST of MU53084 vs. TrEMBL
Match: K7MME1_SOYBN (DNA-directed RNA polymerase subunit beta OS=Glycine max GN=GLYMA_17G183400 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.8e-89
Identity = 159/212 (75.00%), Postives = 185/212 (87.26%), Query Frame = 1


Query: 55  MVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 114
           MVVK     D+EALRELF+HHIESFD++ DAGLET++  IKP+E++D FT+ KLRIWL  
Sbjct: 1   MVVKQGSIPDFEALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLRIWLDN 60

Query: 115 PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 174
           P LYPPQKER  RT+REALLP+ECRQAKISY GK   DVCFQY++  +IRE  NFGQFPI
Sbjct: 61  PVLYPPQKERISRTMREALLPFECRQAKISYAGKITIDVCFQYNDGPIIRENINFGQFPI 120

Query: 175 MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFS 234
           ML+SKLC+LRG DP+KLVSY EEASEMGGYF++NGLERV+RLLI PKRN+PMSMVRNSFS
Sbjct: 121 MLQSKLCNLRGADPQKLVSYREEASEMGGYFILNGLERVIRLLILPKRNHPMSMVRNSFS 180

Query: 235 DRREGYTDKAVVIRCVREDQSSVTVKLYYLRN 294
           DRREGYTDKA+VIRCVR DQSS++V+LYYLRN
Sbjct: 181 DRREGYTDKAIVIRCVRADQSSLSVRLYYLRN 212

Query: 295  354
           
Sbjct: 241  212

Query: 355  414
           
Sbjct: 301  212

Query: 415  474
           
Sbjct: 361  212

Query: 475  534
           
Sbjct: 421  212

Query: 535  594
           
Sbjct: 481  212

Query: 595  654
           
Sbjct: 541  212

Query: 655  691
           
Sbjct: 601  212

[Close]

BLAST of MU53084 vs. TrEMBL
Match: A0A0S3S909_PHAAN (DNA-directed RNA polymerase subunit beta OS=Vigna angularis var. angularis GN=Vigan.06G026200 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 5.3e-86
Identity = 158/212 (74.53%), Postives = 181/212 (85.38%), Query Frame = 1


Query: 55  MVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 114
           MV K     D+  LRELF+HHI+SFDH+VDAGLET++  IK VE++D  T+ KLRI L  
Sbjct: 1   MVAKPGSVPDFGHLRELFKHHIDSFDHMVDAGLETVVRHIKAVEVFDDLTSTKLRISLEN 60

Query: 115 PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 174
           P LYPPQKER  RT+REALLP+ECRQAKISYTGK   DVCFQY++  VIRE  NFGQFPI
Sbjct: 61  PVLYPPQKERISRTMREALLPFECRQAKISYTGKLTVDVCFQYNDGPVIRETINFGQFPI 120

Query: 175 MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFS 234
           ML+SKLC+LRG DPKKLVSY EEASEMGGYF++NGLERV+RLLI PKRNYPMSMVRNSFS
Sbjct: 121 MLQSKLCNLRGADPKKLVSYKEEASEMGGYFILNGLERVIRLLIMPKRNYPMSMVRNSFS 180

Query: 235 DRREGYTDKAVVIRCVREDQSSVTVKLYYLRN 294
           +RREGYTDKAVVIRCVR DQSS++++LYYLRN
Sbjct: 181 ERREGYTDKAVVIRCVRADQSSLSIRLYYLRN 212

Query: 295  354
           
Sbjct: 241  212

Query: 355  414
           
Sbjct: 301  212

Query: 415  474
           
Sbjct: 361  212

Query: 475  534
           
Sbjct: 421  212

Query: 535  594
           
Sbjct: 481  212

Query: 595  654
           
Sbjct: 541  212

Query: 655  691
           
Sbjct: 601  212

[Close]

BLAST of MU53084 vs. TAIR10
Match: AT1G29940.1 (AT1G29940.1 nuclear RNA polymerase A2)

HSP 1 Score: 272.3 bits (695), Expect = 2.7e-73
Identity = 134/218 (61.47%), Postives = 163/218 (74.77%), Query Frame = 1


Query: 55  MVVKFKEN-----EDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLR 114
           MVV  K++     ED++ L  L  HHIESFD++   GL+ + N IKPV +YD  T  +L 
Sbjct: 1   MVVNAKDSTVPTMEDFKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSVYDPNTENELS 60

Query: 115 IWLGKPELYPPQKERNLRTIR-EALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFN 174
           IWL  P ++ PQKE    T R E LLP+ECRQAKISYTG FMADVCF+Y++  V+R+KF+
Sbjct: 61  IWLENPLVFAPQKESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFD 120

Query: 175 FGQFPIMLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSM 234
           FGQFPIML SKLC L+G D +KL+   E  SEMGGYF++NG+ERV R +IAPKRN+P SM
Sbjct: 121 FGQFPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSM 180

Query: 235 VRNSFSDRREGYTDKAVVIRCVREDQSSVTVKLYYLRN 294
           +RNSF DR+EGY+ KAVV RCVR+DQSSVTVKLYYLRN
Sbjct: 181 IRNSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYYLRN 218

Query: 295  354
           
Sbjct: 241  218

Query: 355  414
           
Sbjct: 301  218

Query: 415  474
           
Sbjct: 361  218

Query: 475  534
           
Sbjct: 421  218

Query: 535  594
           
Sbjct: 481  218

Query: 595  654
           
Sbjct: 541  218

Query: 655  691
           
Sbjct: 601  218

[Close]

BLAST of MU53084 vs. TAIR10
Match: AT5G45140.1 (AT5G45140.1 nuclear RNA polymerase C2)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-11
Identity = 45/174 (25.86%), Postives = 86/174 (49.43%), Query Frame = 1


Query: 43  PAKKMVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPV------EIYDSFT 102
           P K    KF+   ++  +R L + H++SF++ ++ G+  ++ +   +       IY  F 
Sbjct: 25  PIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRF- 84

Query: 103 NKKLRIWLGKPELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQY----DEK 162
            KK+R+  G+P +       N+ T+ E + P+ CR A ++Y      ++ + +    ++ 
Sbjct: 85  -KKVRV--GEPSII------NVNTV-ENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKA 144

Query: 163 AVIREKFNFGQFPIMLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVV 222
              ++    G+ PIML+S  C L G D ++L    E   + GGYF++ G E+V+
Sbjct: 145 KSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVL 187

Query: 223  282
           
Sbjct: 205  187

Query: 283  342
           
Sbjct: 265  187

Query: 343  402
           
Sbjct: 325  187

Query: 403  462
           
Sbjct: 385  187

Query: 463  522
           
Sbjct: 445  187

Query: 523  535
           
Sbjct: 505  187

[Close]

BLAST of MU53084 vs. NCBI nr
Match: gi|659089195|ref|XP_008445376.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis melo])

HSP 1 Score: 434.5 bits (1116), Expect = 1.2e-118
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1


Query: 55  MVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 114
           MVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK
Sbjct: 1   MVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 60

Query: 115 PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 174
           PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI
Sbjct: 61  PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 120

Query: 175 MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFS 234
           MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFS
Sbjct: 121 MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFS 180

Query: 235 DRREGYTDKAVVIRCVREDQSSVTVKLYYLRN 294
           DRREGYTDKAVVIRCVREDQSSVTVKLYYLRN
Sbjct: 181 DRREGYTDKAVVIRCVREDQSSVTVKLYYLRN 212

Query: 295  354
           
Sbjct: 241  212

Query: 355  414
           
Sbjct: 301  212

Query: 415  474
           
Sbjct: 361  212

Query: 475  534
           
Sbjct: 421  212

Query: 535  594
           
Sbjct: 481  212

Query: 595  654
           
Sbjct: 541  212

Query: 655  691
           
Sbjct: 601  212

[Close]

BLAST of MU53084 vs. NCBI nr
Match: gi|449458081|ref|XP_004146776.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis sativus])

HSP 1 Score: 430.3 bits (1105), Expect = 2.2e-117
Identity = 210/212 (99.06%), Postives = 210/212 (99.06%), Query Frame = 1


Query: 55  MVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 114
           MVVKF ENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK
Sbjct: 1   MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 60

Query: 115 PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 174
           PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI
Sbjct: 61  PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 120

Query: 175 MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFS 234
           MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYP SMVRNSFS
Sbjct: 121 MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFS 180

Query: 235 DRREGYTDKAVVIRCVREDQSSVTVKLYYLRN 294
           DRREGYTDKAVVIRCVREDQSSVTVKLYYLRN
Sbjct: 181 DRREGYTDKAVVIRCVREDQSSVTVKLYYLRN 212

Query: 295  354
           
Sbjct: 241  212

Query: 355  414
           
Sbjct: 301  212

Query: 415  474
           
Sbjct: 361  212

Query: 475  534
           
Sbjct: 421  212

Query: 535  594
           
Sbjct: 481  212

Query: 595  654
           
Sbjct: 541  212

Query: 655  691
           
Sbjct: 601  212

[Close]

BLAST of MU53084 vs. NCBI nr
Match: gi|731414305|ref|XP_010659083.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform X2 [Vitis vinifera])

HSP 1 Score: 349.7 bits (896), Expect = 3.8e-93
Identity = 164/203 (80.79%), Postives = 183/203 (90.15%), Query Frame = 1


Query: 82  DYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKE 141
           DYE LRELF+HHI+SFDHLV+ GLETL+ S+KPVE+ DSFT +KLRIW G+PELYPPQKE
Sbjct: 7   DYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPVEVVDSFTKQKLRIWFGQPELYPPQKE 66

Query: 142 RNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHL 201
           R+ RT+R+AL P+ECRQAKISY+GK +ADVCFQY     IREKFN GQFPIMLKSKLCHL
Sbjct: 67  RSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFNLGQFPIMLKSKLCHL 126

Query: 202 RGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFSDRREGYTDK 261
           RG DP+KLVS  EE+SEMGGYF++NGLERVVRLLI PKRNYPMSMVRNSF DRREGYTDK
Sbjct: 127 RGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDK 186

Query: 262 AVVIRCVREDQSSVTVKLYYLRN 321
           AVVIRCVREDQS+VTVKLYYLRN
Sbjct: 187 AVVIRCVREDQSAVTVKLYYLRN 209

Query: 322  381
           
Sbjct: 247  209

Query: 382  441
           
Sbjct: 307  209

Query: 442  501
           
Sbjct: 367  209

Query: 502  561
           
Sbjct: 427  209

Query: 562  621
           
Sbjct: 487  209

Query: 622  681
           
Sbjct: 547  209

Query: 682  691
           
Sbjct: 607  209

[Close]

BLAST of MU53084 vs. NCBI nr
Match: gi|731414303|ref|XP_010659082.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform X1 [Vitis vinifera])

HSP 1 Score: 349.7 bits (896), Expect = 3.8e-93
Identity = 164/203 (80.79%), Postives = 183/203 (90.15%), Query Frame = 1


Query: 82  DYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKE 141
           DYE LRELF+HHI+SFDHLV+ GLETL+ S+KPVE+ DSFT +KLRIW G+PELYPPQKE
Sbjct: 16  DYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPVEVVDSFTKQKLRIWFGQPELYPPQKE 75

Query: 142 RNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHL 201
           R+ RT+R+AL P+ECRQAKISY+GK +ADVCFQY     IREKFN GQFPIMLKSKLCHL
Sbjct: 76  RSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFNLGQFPIMLKSKLCHL 135

Query: 202 RGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFSDRREGYTDK 261
           RG DP+KLVS  EE+SEMGGYF++NGLERVVRLLI PKRNYPMSMVRNSF DRREGYTDK
Sbjct: 136 RGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDK 195

Query: 262 AVVIRCVREDQSSVTVKLYYLRN 321
           AVVIRCVREDQS+VTVKLYYLRN
Sbjct: 196 AVVIRCVREDQSAVTVKLYYLRN 218

Query: 322  381
           
Sbjct: 256  218

Query: 382  441
           
Sbjct: 316  218

Query: 442  501
           
Sbjct: 376  218

Query: 502  561
           
Sbjct: 436  218

Query: 562  621
           
Sbjct: 496  218

Query: 622  681
           
Sbjct: 556  218

Query: 682  691
           
Sbjct: 616  218

[Close]

BLAST of MU53084 vs. NCBI nr
Match: gi|955358303|ref|XP_014621157.1| (PREDICTED: DNA-directed RNA polymerase I subunit 2-like isoform X2 [Glycine max])

HSP 1 Score: 341.7 bits (875), Expect = 1.0e-90
Identity = 162/212 (76.42%), Postives = 186/212 (87.74%), Query Frame = 1


Query: 55  MVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 114
           MV K     D+EALRELF+HHIESFD++VDAGL+T++  IKPVE++D FT+ KLRIWL  
Sbjct: 1   MVAKPGSVPDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDN 60

Query: 115 PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 174
           P LYPPQKER  RT+REALLP+ECRQAKISY+GK   DVCFQY++  +IRE  NFGQFPI
Sbjct: 61  PVLYPPQKERISRTMREALLPFECRQAKISYSGKITIDVCFQYNDGPIIRENVNFGQFPI 120

Query: 175 MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFS 234
           ML+SKLC+LRG DP+KLVSY EEASEMGGYF++NGLERVVRLLI PKRNYPMSMVRNSFS
Sbjct: 121 MLQSKLCNLRGADPQKLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFS 180

Query: 235 DRREGYTDKAVVIRCVREDQSSVTVKLYYLRN 294
           DRREGYTDKAVVIRCVR DQSS++V+LYYLRN
Sbjct: 181 DRREGYTDKAVVIRCVRADQSSLSVRLYYLRN 212

Query: 295  354
           
Sbjct: 241  212

Query: 355  414
           
Sbjct: 301  212

Query: 415  474
           
Sbjct: 361  212

Query: 475  534
           
Sbjct: 421  212

Query: 535  594
           
Sbjct: 481  212

Query: 595  654
           
Sbjct: 541  212

Query: 655  691
           
Sbjct: 601  212

The following BLAST results are available for this feature:

BLAST of MU53084 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPA2_ARATH	4.8e-72	61.47	DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana GN=NRPA2 PE=2 SV...	[more]
RPA2_HUMAN	6.5e-37	39.60	DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B PE=1 SV=2	[more]
RPA2_PONAB	1.1e-36	39.60	DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B PE=2 SV=1	[more]
RPA2_RAT	2.7e-35	38.12	DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus GN=Polr1b PE=1 S...	[more]
RPA2_MOUSE	4.7e-35	38.12	DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b PE=1 SV=2	[more]

BLAST of MU53084 vs. TrEMBL


Match Name	E-value	Identity	Description
I1M0N3_SOYBN	1.6e-90	76.53	DNA-directed RNA polymerase subunit beta OS=Glycine max PE=3 SV=2	[more]
A0A0R0GQW5_SOYBN	6.0e-90	76.42	DNA-directed RNA polymerase subunit beta OS=Glycine max GN=GLYMA_13G192600 PE=3 ...	[more]
A0A0B2RSS0_GLYSO	1.8e-89	75.00	DNA-directed RNA polymerase subunit beta OS=Glycine soja GN=glysoja_043959 PE=3 ...	[more]
K7MME1_SOYBN	1.8e-89	75.00	DNA-directed RNA polymerase subunit beta OS=Glycine max GN=GLYMA_17G183400 PE=3 ...	[more]
A0A0S3S909_PHAAN	5.3e-86	74.53	DNA-directed RNA polymerase subunit beta OS=Vigna angularis var. angularis GN=Vi...	[more]

BLAST of MU53084 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29940.1	2.7e-73	61.47	nuclear RNA polymerase A2	[more]
AT5G45140.1	2.2e-11	25.86	nuclear RNA polymerase C2	[more]

BLAST of MU53084 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089195\|ref\|XP_008445376.1\|	1.2e-118	100.00	PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis melo]	[more]
gi\|449458081\|ref\|XP_004146776.1\|	2.2e-117	99.06	PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis sativus]	[more]
gi\|731414305\|ref\|XP_010659083.1\|	3.8e-93	80.79	PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform X2 [Vitis vinifera...	[more]
gi\|731414303\|ref\|XP_010659082.1\|	3.8e-93	80.79	PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform X1 [Vitis vinifera...	[more]
gi\|955358303\|ref\|XP_014621157.1\|	1.0e-90	76.42	PREDICTED: DNA-directed RNA polymerase I subunit 2-like isoform X2 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR007644	RNA_pol_bsu_protrusion
IPR015712	DNA-dir_RNA_pol_su2

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0032549	ribonucleoside binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C011381	MELO3C011381	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
DEa0004J23	DEa0004J23	EST
TEa0013I10	TEa0013I10	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007644	RNA polymerase, beta subunit, protrusion	PFAM	PF04563	RNA_pol_Rpb2_1	coord: 17..165 score: 2.2
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 4..210 score: 2.0
None	No IPR available	GENE3D	G3DSA:3.90.1100.10		coord: 13..163 score: 1.6
None	No IPR available	PANTHER	PTHR20856:SF5	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2	coord: 4..210 score: 2.0
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 7..210 score: 6.1