MU51826 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU51826
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Mediator of RNA polymerase II transcription subunit 11
Location	chr8 : 23212026 .. 23219508 (+)
Sequence length	1233

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAGACACTTCTAGGTAGTTTTTAAGTTGGTTTGAGGGTGAAATTGTTGTTGAAGTAATTTTGAGACTTGAAATGCTACTTTCACACATTTTAAAAACCTTTTAGGTTGGCATTGAGTTTGAAAGTCAAACTTAGGAATTTTTAGGTTGGTTTTGGTTTTCACCTTGAAAGTCTCATTTAGGCATTTTAAAGATACGTTGATAGTTAAAGTAACACTTAGACACTTATTGGGTACTTTTTAGATTGATTTGAAAGTAAAATTGATATTTTGAAGTAATATTTGAGATTTGGAGTGCTACTTTCACAAAAGCCCATGGGATGTCTCGAATCCGAAGCAGCCACCAAGCAAATCCCTAACCCAAGTTGGAGTGCCCGAATCCAACCCTAGCCTGCCCGATTTCCTTCCGTTCTTTTCCTCTATGTAGATCATCCTACCGTTTCCCAGATTTCCGACCACAAACACCTTCCTATCTATTTTGAACTTTCCCATCTCGTAGCTTTCCTTACAGTTTTTGAGAGAAAAGTTAGAGAGAGAATAGGGAATCTACTTTTTTGAGGATCTATATTGTTCATCGTTAATGCCTTCACAATCTATTGGATGTGGCAGAAACCTTAAACCTGGTTTTTTGGTGAAGAGATCCTTGTAATAACGGATGAATTCAGCTTTAATTGAGATGTTGACGTTTATTACTTATTAGGACACAGCCAGCATAGCTCTTGATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTCCAAAATGTTGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCAGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTTATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGACGTGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGGATGAACAAACTATTGATGATTATCAAGTGAAAATGGAAGATTCTTGAGTCACATGTCCTAGTGAGCTTCTAATCTATCTCTGCCACTTTCCCCATTTGTAGAAACGAAAGGTTGAACGAGAACTTCAGTCATGTATGTATATAATCTATCTCTAGTTGAGCTGATAGCATCCACTTTTGAATGTTGATTCATACCAAGATTCTAC

Library


Library category	ESTs
melon 15d library	2
melon CI library	1

Homology

[Close]

BLAST of MU51826 vs. Swiss-Prot
Match: MED11_ARATH (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana GN=MED11 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.8e-41
Identity = 77/104 (74.04%), Postives = 93/104 (89.42%), Query Frame = 3


Query: 720  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 779
            MDP  QNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1    MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 780  VTLRDEIKSACEYRPFETCDYSSRITNELCCKKLEYMISKLDGM 839
            VTLR+EIKSACEYRPFE CDY++RI NE+C +KLEY++++L+ +
Sbjct: 61   VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDL 104

Query: 840   899
            
Sbjct: 121   104

Query: 900   959
            
Sbjct: 181   104

Query: 960   1019
            
Sbjct: 241   104

Query: 1020  1032
            
Sbjct: 301   104

[Close]

BLAST of MU51826 vs. TrEMBL
Match: A0A0A0L450_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.0e-47
Identity = 101/126 (80.16%), Postives = 102/126 (80.95%), Query Frame = 3


Query: 720  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 779
            MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1    MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 780  -------------------DIQVTLRDEIKSACEYRPFETCDYSSRITNELCCKKLEYMI 839
                               DIQVTLRDEIKSACEYRPFE CDYSSRITNELCCKKLEYM+
Sbjct: 61   NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

Query: 840  SKLDGM 899
            SKLDGM
Sbjct: 121  SKLDGM 126

Query: 900   959
            
Sbjct: 181   126

Query: 960   1019
            
Sbjct: 241   126

Query: 1020  1032
            
Sbjct: 301   126

[Close]

BLAST of MU51826 vs. TrEMBL
Match: A0A0A0L450_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1)

HSP 1 Score: 29.3 bits (64), Expect = 1.4e+04
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2


Query: 1031 EQTIDDYQVKMEDS 1073
            +QTIDDYQVK+EDS
Sbjct: 127  KQTIDDYQVKIEDS 140

HSP 2 Score: 190.7 bits (483), Expect = 3.6e-45
Identity = 89/104 (85.58%), Postives = 97/104 (93.27%), Query Frame = 3


Query: 720  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 779
            MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1    MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 780  VTLRDEIKSACEYRPFETCDYSSRITNELCCKKLEYMISKLDGM 839
            VTLRDEIKSACEYRPFE CDYSSRI+NE+CCKKLEY++S+LD M
Sbjct: 61   VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAM 104

Query: 840   899
            
Sbjct: 121   104

Query: 900   959
            
Sbjct: 181   104

Query: 960   1019
            
Sbjct: 241   104

Query: 1020  1032
            
Sbjct: 301   104

[Close]

BLAST of MU51826 vs. TrEMBL
Match: A0A0B0N6V2_GOSAR (Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=F383_14611 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.2e-45
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = 3


Query: 720  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 779
            MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1    MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 780  VTLRDEIKSACEYRPFETCDYSSRITNELCCKKLEYMISKLDGM 839
            VTLRDEIKSACEYRPFE CDYSSRI+NE+CCKKLEY+ S+LD M
Sbjct: 61   VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVFSQLDAM 104

Query: 840   899
            
Sbjct: 121   104

Query: 900   959
            
Sbjct: 181   104

Query: 960   1019
            
Sbjct: 241   104

Query: 1020  1032
            
Sbjct: 301   104

[Close]

BLAST of MU51826 vs. TrEMBL
Match: A0A061FQD7_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_044665 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 87/104 (83.65%), Postives = 98/104 (94.23%), Query Frame = 3


Query: 720  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 779
            MD PAQNTSLQRLQNVEKRIVRVL+LAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1    MDSPAQNTSLQRLQNVEKRIVRVLDLAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 780  VTLRDEIKSACEYRPFETCDYSSRITNELCCKKLEYMISKLDGM 839
            VTLRDEIKSACEYRPFE CDYSSRI+NE+CC+KLEY++S+L+ M
Sbjct: 61   VTLRDEIKSACEYRPFEKCDYSSRISNEICCRKLEYVLSQLEAM 104

Query: 840   899
            
Sbjct: 121   104

Query: 900   959
            
Sbjct: 181   104

Query: 960   1019
            
Sbjct: 241   104

Query: 1020  1032
            
Sbjct: 301   104

[Close]

BLAST of MU51826 vs. TrEMBL
Match: W9R6A2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026253 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 89/104 (85.58%), Postives = 97/104 (93.27%), Query Frame = 3


Query: 720  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 779
            MD   QNTSLQRLQNVEKRIVRVLELAGGVM+EL+NPAGPRKEFVNNHC EFMQ IKDIQ
Sbjct: 1    MDSQTQNTSLQRLQNVEKRIVRVLELAGGVMDELSNPAGPRKEFVNNHCREFMQLIKDIQ 60

Query: 780  VTLRDEIKSACEYRPFETCDYSSRITNELCCKKLEYMISKLDGM 839
            V+LR+EIKSAC+YRPFE CDYSSRI NE+CCKKLEY+IS+LDGM
Sbjct: 61   VSLREEIKSACDYRPFEKCDYSSRIANEICCKKLEYVISQLDGM 104

Query: 840   899
            
Sbjct: 121   104

Query: 900   959
            
Sbjct: 181   104

Query: 960   1019
            
Sbjct: 241   104

Query: 1020  1032
            
Sbjct: 301   104

[Close]

BLAST of MU51826 vs. TAIR10
Match: AT3G01435.1 (AT3G01435.1 Expressed protein)

HSP 1 Score: 169.5 bits (428), Expect = 4.4e-42
Identity = 77/104 (74.04%), Postives = 93/104 (89.42%), Query Frame = 3


Query: 720  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 779
            MDP  QNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1    MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 780  VTLRDEIKSACEYRPFETCDYSSRITNELCCKKLEYMISKLDGM 839
            VTLR+EIKSACEYRPFE CDY++RI NE+C +KLEY++++L+ +
Sbjct: 61   VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDL 104

Query: 840   899
            
Sbjct: 121   104

Query: 900   959
            
Sbjct: 181   104

Query: 960   1019
            
Sbjct: 241   104

Query: 1020  1032
            
Sbjct: 301   104

[Close]

BLAST of MU51826 vs. NCBI nr
Match: gi|659082827|ref|XP_008442051.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 2.0e-52
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 3


Query: 720  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 779
            MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1    MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 780  VTLRDEIKSACEYRPFETCDYSSRITNELCCKKLEYMISKLDGM 839
            VTLRDEIKSACEYRPFE CDYSSRITNELCCKKLEYMISKLDGM
Sbjct: 61   VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGM 104

Query: 840   899
            
Sbjct: 121   104

Query: 900   959
            
Sbjct: 181   104

Query: 960   1019
            
Sbjct: 241   104

Query: 1020  1032
            
Sbjct: 301   104

[Close]

BLAST of MU51826 vs. NCBI nr
Match: gi|449453808|ref|XP_004144648.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 9.8e-52
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 3


Query: 720  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 779
            MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1    MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 780  VTLRDEIKSACEYRPFETCDYSSRITNELCCKKLEYMISKLDGM 839
            VTLRDEIKSACEYRPFE CDYSSRITNELCCKKLEYM+SKLDGM
Sbjct: 61   VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGM 104

Query: 840   899
            
Sbjct: 121   104

Query: 900   959
            
Sbjct: 181   104

Query: 960   1019
            
Sbjct: 241   104

Query: 1020  1032
            
Sbjct: 301   104

[Close]

BLAST of MU51826 vs. NCBI nr
Match: gi|700199753|gb|KGN54911.1| (hypothetical protein Csa_4G594450 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 6.6e-48
Identity = 101/126 (80.16%), Postives = 102/126 (80.95%), Query Frame = 3


Query: 720  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 779
            MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1    MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 780  -------------------DIQVTLRDEIKSACEYRPFETCDYSSRITNELCCKKLEYMI 839
                               DIQVTLRDEIKSACEYRPFE CDYSSRITNELCCKKLEYM+
Sbjct: 61   NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

Query: 840  SKLDGM 899
            SKLDGM
Sbjct: 121  SKLDGM 126

Query: 900   959
            
Sbjct: 181   126

Query: 960   1019
            
Sbjct: 241   126

Query: 1020  1032
            
Sbjct: 301   126

[Close]

BLAST of MU51826 vs. NCBI nr
Match: gi|590626684|ref|XP_007026238.1| (Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao])

HSP 1 Score: 193.4 bits (490), Expect = 8.0e-46
Identity = 89/104 (85.58%), Postives = 97/104 (93.27%), Query Frame = 3


Query: 720  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 779
            MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1    MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 780  VTLRDEIKSACEYRPFETCDYSSRITNELCCKKLEYMISKLDGM 839
            VTLRDEIKSACEYRPFE CDYSSRI+NE+CCKKLEY++S+LD M
Sbjct: 61   VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAM 104

Query: 840   899
            
Sbjct: 121   104

Query: 900   959
            
Sbjct: 181   104

Query: 960   1019
            
Sbjct: 241   104

Query: 1020  1032
            
Sbjct: 301   104

[Close]

BLAST of MU51826 vs. NCBI nr
Match: gi|728830775|gb|KHG10218.1| (Mediator of RNA polymerase II transcription subunit 11 [Gossypium arboreum])

HSP 1 Score: 192.6 bits (488), Expect = 1.4e-45
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = 3


Query: 720  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 779
            MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1    MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 780  VTLRDEIKSACEYRPFETCDYSSRITNELCCKKLEYMISKLDGM 839
            VTLRDEIKSACEYRPFE CDYSSRI+NE+CCKKLEY+ S+LD M
Sbjct: 61   VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVFSQLDAM 104

Query: 840   899
            
Sbjct: 121   104

Query: 900   959
            
Sbjct: 181   104

Query: 960   1019
            
Sbjct: 241   104

Query: 1020  1032
            
Sbjct: 301   104

The following BLAST results are available for this feature:

BLAST of MU51826 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED11_ARATH	7.8e-41	74.04	Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana G...	[more]

BLAST of MU51826 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L450_CUCSA	3.0e-47	80.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1	[more]
A0A0A0L450_CUCSA	1.4e+04	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1	[more]
A0A0B0N6V2_GOSAR	6.2e-45	85.58	Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=...	[more]
A0A061FQD7_THECC	1.8e-44	83.65	Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM...	[more]
W9R6A2_9ROSA	1.8e-44	85.58	Uncharacterized protein OS=Morus notabilis GN=L484_026253 PE=4 SV=1	[more]

BLAST of MU51826 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01435.1	4.4e-42	74.04	Expressed protein	[more]

BLAST of MU51826 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082827\|ref\|XP_008442051.1\|	2.0e-52	99.04	PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]	[more]
gi\|449453808\|ref\|XP_004144648.1\|	9.8e-52	97.12	PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativ...	[more]
gi\|700199753\|gb\|KGN54911.1\|	6.6e-48	80.16	hypothetical protein Csa_4G594450 [Cucumis sativus]	[more]
gi\|590626684\|ref\|XP_007026238.1\|	8.0e-46	85.58	Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao]	[more]
gi\|728830775\|gb\|KHG10218.1\|	1.4e-45	85.58	Mediator of RNA polymerase II transcription subunit 11 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR019404	Mediator_Med11

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C008876	MELO3C008876	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
15D05C05	15D05C05	EST
15D16F10	15D16F10	EST
CI28D12	CI28D12	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019404	Mediator complex, subunit Med11	PFAM	PF10280	Med11	coord: 8..74 score: 3.0
None	No IPR available	PANTHER	PTHR22890	UNCHARACTERIZED	coord: 1..108 score: 5.3