MU51681 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU51681
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA-binding 40
Location	chr11 : 15021972 .. 15031111 (+)
Sequence length	736

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCGCAAACAATCTTTCTCCCTCTCTCTCGCACGCCGGCACACTACCGACGACGACACACCCGCCCGTACCTCTCCCACGCACGCCGGGGACGACGCGCCTTGTCGTCGACGATACGCCCGAAACTCCTCTCTTCTTCTCCTTCAGCCGACGCCCCCACACAGCCACCCCTTGCGCCTCTTAACTCGCCGGTGATTTCCACCCACACGCCGCCGTTCGAGGCCATCAGAGCGATAGTTTTCGCTGCAGTTCTTGCCATCGTTCGTGATGCTCTGCCGCTGAGATCTGCAAGCCACACGTGTGCGAAGTCCTTTCGTCGTTCATCCCAGCCGCCAAATTTTATTTGATCGCCTGCCGTCGGGGGTAACATATTGTCGGGCGCCGAGTCCCGTTCCTACAGGCCGAATCTTTTTGGTGAACTTTTAGCAGAGGAAAGGGTACCAGAACGATTTAATATTATAAATTTAAACAGCTTGTAACTGTATCAAGAAAGGACCTTGTATCCTCATCTTTTTAGATGGAGGATGCTGCCATAAAAGGTGCCATATCTAAGGACCACTGGAGTAGAGATCATACTGAGGGTATGAGAGCAAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTTGAGTATGCGTATCCTCCTCCAGATGGTAATATCCTGACCAACATTGTTAATGCCCTCATAGCTGTCCCTCGCTTTTA

Library


Library category	ESTs
Tam Dew mature fruit library	1
melon CM-PEa library	1
melon CM-TEa library	1

Homology

[Close]

BLAST of MU51681 vs. Swiss-Prot
Match: U1165_ARATH (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana GN=SNRNP65 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-14
Identity = 41/72 (56.94%), Postives = 47/72 (65.28%), Query Frame = 3


Query: 516 MEDAAIKG-AISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNI 575
           +E++  KG A S    + D   G     +  GEPIA +LG+DYPFPPHL+YAYPPPD NI
Sbjct: 112 IEESVTKGNAFSTVSTNNDSKSGQ----ILSGEPIAPKLGIDYPFPPHLQYAYPPPDANI 171

Query: 576 LTNIVNALIAVP 635
           L NI NALIAVP
Sbjct: 172 LANITNALIAVP 179

Query: 636  695
           
Sbjct: 232  179

Query: 696  729
           
Sbjct: 292  179

[Close]

BLAST of MU51681 vs. TrEMBL
Match: A0A0A0KCT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118290 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.5e-34
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 3


Query: 516 MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 575
           ME AAIK AISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 576 TNIVNALIAVPRF 635
           TNIVNALIAVPRF
Sbjct: 61  TNIVNALIAVPRF 73

Query: 636  695
           
Sbjct: 121  73

Query: 696  735
           
Sbjct: 181  73

[Close]

BLAST of MU51681 vs. TrEMBL
Match: B9I5U9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05120g PE=4 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 7.7e-19
Identity = 56/92 (60.87%), Postives = 61/92 (66.30%), Query Frame = 3


Query: 459 KFKQLVTVSRKDLVSSSF*MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVD 518
           KFKQ      KD V  +  M+DA++         +RD  EG     L   EPIA RLGVD
Sbjct: 116 KFKQSEAQQGKDSVLPTSLMKDASV---------TRDVIEGSNFGSLPASEPIAPRLGVD 175

Query: 519 YPFPPHLEYAYPPPDGNILTNIVNALIAVPRF 578
           YPFPPHLEYAYPPPDGNILTNIVNALIAVPRF
Sbjct: 176 YPFPPHLEYAYPPPDGNILTNIVNALIAVPRF 198

Query: 579  638
           
Sbjct: 236  198

Query: 639  698
           
Sbjct: 296  198

Query: 699  735
           
Sbjct: 356  198

[Close]

BLAST of MU51681 vs. TrEMBL
Match: D7SNK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g01100 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.9e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 3


Query: 561 SRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRF 620
           +RD  EG+++  L   EPIAARLG+DYPFPPHLEYAYPPPDGNILTNIVNALIAVPRF
Sbjct: 125 ARDLDEGLKSSSLPASEPIAARLGIDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRF 182

Query: 621  680
           
Sbjct: 185  182

Query: 681  735
           
Sbjct: 245  182

[Close]

BLAST of MU51681 vs. TrEMBL
Match: A0A061F242_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_026027 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.0e-18
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 3


Query: 489 KDLVSSSF*MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYA 548
           KD   S+  ++DA++         +RD  +G R R +   EPIA RLGVDYPFPPHLEYA
Sbjct: 127 KDFPQSASMVKDASL---------ARDLNQGSRLRSVPTSEPIAPRLGVDYPFPPHLEYA 186

Query: 549 YPPPDGNILTNIVNALIAVPRF 608
           YPPPDGNILTNIVNALIAVPRF
Sbjct: 187 YPPPDGNILTNIVNALIAVPRF 199

Query: 609  668
           
Sbjct: 247  199

Query: 669  728
           
Sbjct: 307  199

Query: 729  735
           
Sbjct: 367  199

[Close]

BLAST of MU51681 vs. TrEMBL
Match: A0A061F081_THECC (RNA-binding family protein isoform 6 OS=Theobroma cacao GN=TCM_026027 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.0e-18
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 3


Query: 489 KDLVSSSF*MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYA 548
           KD   S+  ++DA++         +RD  +G R R +   EPIA RLGVDYPFPPHLEYA
Sbjct: 127 KDFPQSASMVKDASL---------ARDLNQGSRLRSVPTSEPIAPRLGVDYPFPPHLEYA 186

Query: 549 YPPPDGNILTNIVNALIAVPRF 608
           YPPPDGNILTNIVNALIAVPRF
Sbjct: 187 YPPPDGNILTNIVNALIAVPRF 199

Query: 609  668
           
Sbjct: 247  199

Query: 669  728
           
Sbjct: 307  199

Query: 729  735
           
Sbjct: 367  199

[Close]

BLAST of MU51681 vs. TAIR10
Match: AT1G09230.1 (AT1G09230.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-15
Identity = 41/72 (56.94%), Postives = 47/72 (65.28%), Query Frame = 3


Query: 516 MEDAAIKG-AISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNI 575
           +E++  KG A S    + D   G     +  GEPIA +LG+DYPFPPHL+YAYPPPD NI
Sbjct: 112 IEESVTKGNAFSTVSTNNDSKSGQ----ILSGEPIAPKLGIDYPFPPHLQYAYPPPDANI 171

Query: 576 LTNIVNALIAVP 635
           L NI NALIAVP
Sbjct: 172 LANITNALIAVP 179

Query: 636  695
           
Sbjct: 232  179

Query: 696  729
           
Sbjct: 292  179

[Close]

BLAST of MU51681 vs. NCBI nr
Match: gi|659094661|ref|XP_008448178.1| (PREDICTED: RNA-binding protein 40 isoform X2 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 7.7e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 516 MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 575
           MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 576 TNIVNALIAVPRF 635
           TNIVNALIAVPRF
Sbjct: 61  TNIVNALIAVPRF 73

Query: 636  695
           
Sbjct: 121  73

Query: 696  735
           
Sbjct: 181  73

[Close]

BLAST of MU51681 vs. NCBI nr
Match: gi|659094663|ref|XP_008448179.1| (PREDICTED: RNA-binding protein 40 isoform X3 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 7.7e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 516 MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 575
           MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 576 TNIVNALIAVPRF 635
           TNIVNALIAVPRF
Sbjct: 61  TNIVNALIAVPRF 73

Query: 636  695
           
Sbjct: 121  73

Query: 696  735
           
Sbjct: 181  73

[Close]

BLAST of MU51681 vs. NCBI nr
Match: gi|659094665|ref|XP_008448180.1| (PREDICTED: RNA-binding protein 40 isoform X4 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 7.7e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 516 MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 575
           MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 576 TNIVNALIAVPRF 635
           TNIVNALIAVPRF
Sbjct: 61  TNIVNALIAVPRF 73

Query: 636  695
           
Sbjct: 121  73

Query: 696  735
           
Sbjct: 181  73

[Close]

BLAST of MU51681 vs. NCBI nr
Match: gi|659094669|ref|XP_008448182.1| (PREDICTED: RNA-binding protein 40 isoform X5 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 7.7e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 516 MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 575
           MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 576 TNIVNALIAVPRF 635
           TNIVNALIAVPRF
Sbjct: 61  TNIVNALIAVPRF 73

Query: 636  695
           
Sbjct: 121  73

Query: 696  735
           
Sbjct: 181  73

[Close]

BLAST of MU51681 vs. NCBI nr
Match: gi|659094673|ref|XP_008448185.1| (PREDICTED: RNA-binding protein 40 isoform X7 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 7.7e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 516 MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 575
           MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 576 TNIVNALIAVPRF 635
           TNIVNALIAVPRF
Sbjct: 61  TNIVNALIAVPRF 73

Query: 636  695
           
Sbjct: 121  73

Query: 696  735
           
Sbjct: 181  73

The following BLAST results are available for this feature:

BLAST of MU51681 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U1165_ARATH	2.8e-14	56.94	U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana G...	[more]

BLAST of MU51681 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCT1_CUCSA	6.5e-34	97.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118290 PE=4 SV=1	[more]
B9I5U9_POPTR	7.7e-19	60.87	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05120g PE=4 SV=2	[more]
D7SNK2_VITVI	2.9e-18	79.31	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g01100 PE=4 SV=...	[more]
A0A061F242_THECC	5.0e-18	62.20	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_026027 PE=4 SV=1	[more]
A0A061F081_THECC	5.0e-18	62.20	RNA-binding family protein isoform 6 OS=Theobroma cacao GN=TCM_026027 PE=4 SV=1	[more]

BLAST of MU51681 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09230.1	1.6e-15	56.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of MU51681 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094661\|ref\|XP_008448178.1\|	7.7e-36	100.00	PREDICTED: RNA-binding protein 40 isoform X2 [Cucumis melo]	[more]
gi\|659094663\|ref\|XP_008448179.1\|	7.7e-36	100.00	PREDICTED: RNA-binding protein 40 isoform X3 [Cucumis melo]	[more]
gi\|659094665\|ref\|XP_008448180.1\|	7.7e-36	100.00	PREDICTED: RNA-binding protein 40 isoform X4 [Cucumis melo]	[more]
gi\|659094669\|ref\|XP_008448182.1\|	7.7e-36	100.00	PREDICTED: RNA-binding protein 40 isoform X5 [Cucumis melo]	[more]
gi\|659094673\|ref\|XP_008448185.1\|	7.7e-36	100.00	PREDICTED: RNA-binding protein 40 isoform X7 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C013490	MELO3C013490	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FR17C24	FR17C24	EST
PEa0016B14	PEa0016B14	EST
TEa0011C22	TEa0011C22	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR16105	UNCHARACTERIZED	coord: 1..73 score: 2.5
None	No IPR available	PANTHER	PTHR16105:SF0	RNA-BINDING PROTEIN 40	coord: 1..73 score: 2.5