MU50655 (transcribed_cluster) Melon (DHL92) v3.5.1

NameMU50655
Typetranscribed_cluster
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Locationchr8 : 23211335 .. 23219901 (+)
Sequence length1059
The following sequences are available for this feature:

transcribed_cluster sequence

AAACAAAATTACTCTCACCACACCCATAATCCACCGCGGTTCCCGCTCGTTCCCTTATAGCCGTCGTCGAACATCCAGTCCAGTTACCATCAGTCCACTCGCGTCGTTTAGGTTCTTCTCGTCGTTTTTTGCTGAGCCAGCATAGCTCTTGATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTCCAAAATGTTGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCAGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTTATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATGGAAGATTCTTGAGTCACATGTCCTAGTGAGCTTCTAATCTATCTCTGCCACTTTCCCCATTTGTAGAAACGAAAGGTTGAACGAGAACTTCAGTCATGTATGTATATAATCTATCTCTAGTTGAGCTGATAGCATCCACTTTTGAATGTTGATTCATACAAAGATTCTACTATACAGTATATCTGTTTTATTATCCTATCATCTGTGTTTTTTAGTATCAATTTCGAGAAGGTGACAAATCCAAATCCAGGTAGATCTTCTATCTCAAGGGATGTAAACTATTCCTTGTTTTTTCTTTAATCTATGGCCTTTTCTGTACTTTGGCATGGACCATATCACATTGGCTGTATACATTTTCTTCCTTTTGTTTTTGTCATAGAGACTGTCACCTTCTCAATAGTAAACGGTTGTTTTTCTGGTTTATTTGGAACTATTGGGCTGTTTGGTGAACCGTGATGGAATGAGTTTGCAATGTAATATACTCGAAAACTCTATGTTTGGATTAGGTGTATTGGGCTTGATTTGTAATACTAAACTTATTCCATTCTGACAGTTTTCAATCC
BLAST of MU50655 vs. Swiss-Prot
Match: MED11_ARATH (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana GN=MED11 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.7e-44
Identity = 83/111 (74.77%), Postives = 99/111 (89.19%), Query Frame = 2

Query: 152 MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 211
           MDP  QNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 212 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDY 271
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

Query: 272 331
           
Sbjct: 121 111

Query: 332 391
           
Sbjct: 181 111

Query: 392 451
           
Sbjct: 241 111

Query: 452 485
           
Sbjct: 301 111

BLAST of MU50655 vs. TrEMBL
Match: A0A0A0L450_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 6.7e-56
Identity = 115/140 (82.14%), Postives = 117/140 (83.57%), Query Frame = 2

Query: 152 MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 211
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 212 -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMI 271
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

Query: 272 SKLDGMKQTIDDYQVKMEDS 331
           SKLDGMKQTIDDYQVK+EDS
Sbjct: 121 SKLDGMKQTIDDYQVKIEDS 140

Query: 332 391
           
Sbjct: 181 140

Query: 392 451
           
Sbjct: 241 140

Query: 452 506
           
Sbjct: 301 140

BLAST of MU50655 vs. TrEMBL
Match: A0A061GG64_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_030340 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.9e-50
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 2

Query: 152 MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 211
           MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 212 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 271
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

Query: 272 331
           
Sbjct: 121 112

Query: 332 391
           
Sbjct: 181 112

Query: 392 451
           
Sbjct: 241 112

Query: 452 488
           
Sbjct: 301 112

BLAST of MU50655 vs. TrEMBL
Match: A0A0B0N6V2_GOSAR (Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=F383_14611 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.2e-50
Identity = 97/112 (86.61%), Postives = 105/112 (93.75%), Query Frame = 2

Query: 152 MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 211
           MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 212 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 271
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY+ S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVFSQLDAMKQTIDEYQ 112

Query: 272 331
           
Sbjct: 121 112

Query: 332 391
           
Sbjct: 181 112

Query: 392 451
           
Sbjct: 241 112

Query: 452 488
           
Sbjct: 301 112

BLAST of MU50655 vs. TrEMBL
Match: A0A061FXJ7_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_044670 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 94/112 (83.93%), Postives = 107/112 (95.54%), Query Frame = 2

Query: 152 MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 211
           MD PAQNTSLQRLQNVEKRIVRVL+LAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPAQNTSLQRLQNVEKRIVRVLDLAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 212 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 271
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CC+KLEY++S+L+ MKQT+D+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCRKLEYVLSQLEAMKQTVDEYQ 112

Query: 272 331
           
Sbjct: 121 112

Query: 332 391
           
Sbjct: 181 112

Query: 392 451
           
Sbjct: 241 112

Query: 452 488
           
Sbjct: 301 112

BLAST of MU50655 vs. TrEMBL
Match: A0A061FQD7_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_044665 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 94/112 (83.93%), Postives = 107/112 (95.54%), Query Frame = 2

Query: 152 MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 211
           MD PAQNTSLQRLQNVEKRIVRVL+LAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPAQNTSLQRLQNVEKRIVRVLDLAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 212 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 271
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CC+KLEY++S+L+ MKQT+D+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCRKLEYVLSQLEAMKQTVDEYQ 112

Query: 272 331
           
Sbjct: 121 112

Query: 332 391
           
Sbjct: 181 112

Query: 392 451
           
Sbjct: 241 112

Query: 452 488
           
Sbjct: 301 112

BLAST of MU50655 vs. TAIR10
Match: AT3G01435.1 (AT3G01435.1 Expressed protein)

HSP 1 Score: 181.4 bits (459), Expect = 9.6e-46
Identity = 83/111 (74.77%), Postives = 99/111 (89.19%), Query Frame = 2

Query: 152 MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 211
           MDP  QNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 212 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDY 271
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

Query: 272 331
           
Sbjct: 121 111

Query: 332 391
           
Sbjct: 181 111

Query: 392 451
           
Sbjct: 241 111

Query: 452 485
           
Sbjct: 301 111

BLAST of MU50655 vs. NCBI nr
Match: gi|659082827|ref|XP_008442051.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 2

Query: 152 MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 211
           MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 212 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 271
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

Query: 272 331
           
Sbjct: 121 118

Query: 332 391
           
Sbjct: 181 118

Query: 392 451
           
Sbjct: 241 118

Query: 452 506
           
Sbjct: 301 118

BLAST of MU50655 vs. NCBI nr
Match: gi|449453808|ref|XP_004144648.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 2

Query: 152 MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 211
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 212 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 271
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTIDDYQVK+EDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 118

Query: 272 331
           
Sbjct: 121 118

Query: 332 391
           
Sbjct: 181 118

Query: 392 451
           
Sbjct: 241 118

Query: 452 506
           
Sbjct: 301 118

BLAST of MU50655 vs. NCBI nr
Match: gi|700199753|gb|KGN54911.1| (hypothetical protein Csa_4G594450 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 115/140 (82.14%), Postives = 117/140 (83.57%), Query Frame = 2

Query: 152 MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 211
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 212 -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMI 271
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

Query: 272 SKLDGMKQTIDDYQVKMEDS 331
           SKLDGMKQTIDDYQVK+EDS
Sbjct: 121 SKLDGMKQTIDDYQVKIEDS 140

Query: 332 391
           
Sbjct: 181 140

Query: 392 451
           
Sbjct: 241 140

Query: 452 506
           
Sbjct: 301 140

BLAST of MU50655 vs. NCBI nr
Match: gi|590626684|ref|XP_007026238.1| (Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao])

HSP 1 Score: 210.7 bits (535), Expect = 4.2e-51
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 2

Query: 152 MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 211
           MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 212 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 271
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

Query: 272 331
           
Sbjct: 121 112

Query: 332 391
           
Sbjct: 181 112

Query: 392 451
           
Sbjct: 241 112

Query: 452 488
           
Sbjct: 301 112

BLAST of MU50655 vs. NCBI nr
Match: gi|728830775|gb|KHG10218.1| (Mediator of RNA polymerase II transcription subunit 11 [Gossypium arboreum])

HSP 1 Score: 209.9 bits (533), Expect = 7.1e-51
Identity = 97/112 (86.61%), Postives = 105/112 (93.75%), Query Frame = 2

Query: 152 MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 211
           MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 212 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 271
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY+ S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVFSQLDAMKQTIDEYQ 112

Query: 272 331
           
Sbjct: 121 112

Query: 332 391
           
Sbjct: 181 112

Query: 392 451
           
Sbjct: 241 112

Query: 452 488
           
Sbjct: 301 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MED11_ARATH1.7e-4474.77Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana G... [more]
Match NameE-valueIdentityDescription
A0A0A0L450_CUCSA6.7e-5682.14Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1[more]
A0A061GG64_THECC1.9e-5086.61Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM... [more]
A0A0B0N6V2_GOSAR3.2e-5086.61Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=... [more]
A0A061FXJ7_THECC1.2e-4983.93Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM... [more]
A0A061FQD7_THECC1.2e-4983.93Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM... [more]
Match NameE-valueIdentityDescription
AT3G01435.19.6e-4674.77 Expressed protein[more]
Match NameE-valueIdentityDescription
gi|659082827|ref|XP_008442051.1|1.2e-61100.00PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo][more]
gi|449453808|ref|XP_004144648.1|1.7e-6097.46PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativ... [more]
gi|700199753|gb|KGN54911.1|1.1e-5682.14hypothetical protein Csa_4G594450 [Cucumis sativus][more]
gi|590626684|ref|XP_007026238.1|4.2e-5186.61Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao][more]
gi|728830775|gb|KHG10218.1|7.1e-5186.61Mediator of RNA polymerase II transcription subunit 11 [Gossypium arboreum][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR019404Mediator_Med11
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
MELO3C008876MELO3C008876gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
46D38B0246D38B02EST
AI14E01AI14E01EST
CI42A11CI42A11EST
GA52YH01FM1GA52YH01FM1EST


Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019404Mediator complex, subunit Med11PFAMPF10280Med11coord: 8..110
score: 1.1
NoneNo IPR availableunknownCoilCoilcoord: 117..118
scor
NoneNo IPR availablePANTHERPTHR22890UNCHARACTERIZEDcoord: 1..117
score: 1.2
NoneNo IPR availablePANTHERPTHR22890:SF2MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11coord: 1..117
score: 1.2