MU50405 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU50405
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Neutral alpha-glucosidase
Location	chr1 : 1777271 .. 1802201 (-)
Sequence length	839

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAACCCTAAGTACTCTCTTCACTCTCTTTCACTCTCTTCTAGTTCTCTCCAATCTTCAACGTTCGGCCCCTCCCCTCCGATCAGACGACGCTGGCGAACGCCGCTCACCCTCTCCTAGACGAAGCCGGCGACTGTAACTCCGATCAAACCAGACGCACTCGCTCTCCGTTTTGGTTTCCGTTTCAAGTCGATGCTTCCGGTTCTGCCTGCTAGGACGGAGATCCTAACTCAACATTTGCCGATGCTTCTGAGGATTACGATGAGGAAGAGAATGGGGGTTTTGGGTCATCTATGCAGTCTCGTGGGGAAGTTGGTGGAACGTTGTCACTGGAAAATGTTAGAAGAGAGATTTTTGGAGCTTTAGTTCCCTGACGATGGTTACAATTATTTGCTGCATCTTCGGGAGATTAAGAATACTGGTGGTGAGAACCCCTAGGCTAAGCTGAATCATGTTCCACGCGATGAGAAGCTGTTGAACCGGGTCTATGCATCTAGCGACAGTGATGGCACTGATTGTGACGGCCCTGTATAGCCGAGGAGGACAAGTCCCTTGCCCAAAAGCTCAATCATGCTAAACTTAAATTTTGGATCTACCAGACTTGGAAAAGGCAAGAGGAAACTAGGGAAGGTGGCTGGAAATTGTCAACTACTTGAAGGGATATAATGGCTCCAAGGCAAGATTAAAATCATTATTTTAGAAGAGTATAGTGGTGCGAAGTATTGATCTGCTGGATGTATTGAGGGATATAGCATCATTGAAAGGTGATATTGACGGAGGGTTAGTTCTAAGACGAAAAATATACATTCCGAAGGAAGATGCAAAGATACTGAAGATTAAC

Library


Library category	ESTs
melon PFLP2 library	1
melon CM-Dea library	1
melon CM-TEa library	1

Homology

[Close]

BLAST of MU50405 vs. TrEMBL
Match: E5GBQ8_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.8e-16
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 190 DASGSAC*DGDPNSTFADASEDYDEEENGGFGSSMQSRGEVGGTLSLENVRREI 249
           DASGSAC D DPNS FADAS+DYDEEENGGFGSSMQSRGEVGG  S ENVRREI
Sbjct: 16  DASGSACYDEDPNSIFADASKDYDEEENGGFGSSMQSRGEVGGMSSPENVRREI 69

Query: 250  309
           
Sbjct: 76   69

Query: 310  352
           
Sbjct: 136  69

[Close]

BLAST of MU50405 vs. TrEMBL
Match: A0A0A0L517_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006680 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.5e-15
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 1


Query: 187 VDASGSAC*DGDPNSTFADASEDYDEEENGGFGSSMQSRGEVGGTLSL-ENVRREI 246
           VDASGSAC D DPNS FADASEDYDEEENGGFGSSMQ  G+VGGT SL ENVR++I
Sbjct: 55  VDASGSACYDEDPNSIFADASEDYDEEENGGFGSSMQFSGDVGGTSSLPENVRKDI 110

Query: 247  306
           
Sbjct: 115  110

Query: 307  352
           
Sbjct: 175  110

[Close]

BLAST of MU50405 vs. TrEMBL
Match: A0A0A0L517_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006680 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.3e-09
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 2


Query: 353 LEL*FPDDGYNYLLHLREIKNTGG-----ENP*AKLNHVPRDEK 412
           LEL FPDDGYNYLLHLREIKNTGG     +NP AKLN VPRDEK
Sbjct: 111 LELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEK 154

Query: 413  470
           
Sbjct: 171  154

HSP 2 Score: 38.9 bits (89), Expect = 1.2e+01
Identity = 17/21 (80.95%), Postives = 18/21 (85.71%), Query Frame = 2


Query: 464 EKLLNRVYASSDSDGTDCDGP 523
           + LLNR YASSDSDGTDCD P
Sbjct: 292 DTLLNRDYASSDSDGTDCDEP 312

Query: 524  527
           
Sbjct: 352  312

HSP 3 Score: 35.8 bits (81), Expect = 1.0e+02
Identity = 15/17 (88.24%), Postives = 17/17 (100.00%), Query Frame = 1


Query: 523 PCIAEEDKSLAQKLNHA 574
           PCIAEE++SLAQKLNHA
Sbjct: 312 PCIAEEEESLAQKLNHA 328

HSP 4 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 2


Query: 338 LEERFLEL*FPDDGYNYLLHLREIKNTGG-----ENP*AKLNHVPRDEK 397
           + +  LEL FPDDGYNYL HLREIKNTGG     ENP AK N +PRD K
Sbjct: 98  VRKEILELGFPDDGYNYLHHLREIKNTGGGSAYYENPKAKFNELPRDVK 146

Query: 398  457
           
Sbjct: 158  146

Query: 458  470
           
Sbjct: 218  146

[Close]

BLAST of MU50405 vs. TrEMBL
Match: M0ZWE7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003712 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 2


Query: 338 LEERFLEL*FPDDGYNYLLHLREIKNTGG-----ENP*AKLNHVPRDEK 397
           + +  LEL FPDDGYNYL HLREIKNTGG     ENP AK N +PRD K
Sbjct: 98  VRKEILELGFPDDGYNYLHHLREIKNTGGGSAYYENPKAKFNELPRDVK 146

Query: 398  457
           
Sbjct: 158  146

Query: 458  470
           
Sbjct: 218  146

[Close]

BLAST of MU50405 vs. TrEMBL
Match: A0A0V0IJ83_SOLCH (Uncharacterized protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 2


Query: 338 LEERFLEL*FPDDGYNYLLHLREIKNTGG-----ENP*AKLNHVPRDEK 397
           + +  LEL FPDDGYNYL HLREIKNTGG     ENP AK N +PRD K
Sbjct: 98  VRKEILELGFPDDGYNYLHHLREIKNTGGGSAYYENPKAKFNELPRDVK 146

Query: 398  457
           
Sbjct: 158  146

Query: 458  470
           
Sbjct: 218  146

[Close]

BLAST of MU50405 vs. TAIR10
Match: AT3G49990.1 (AT3G49990.1 unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 4.1e-07
Identity = 27/49 (55.10%), Postives = 31/49 (63.27%), Query Frame = 2


Query: 338 LEERFLEL*FPDDGYNYLLHLREIKNTGG-----ENP*AKLNHVPRDEK 397
           + +  LEL +PDDGYNYL HLREIKNTGG      NP  ++  +PRD K
Sbjct: 89  VRKEILELGYPDDGYNYLEHLREIKNTGGGSNFYVNPKYEVAQLPRDVK 137

Query: 398  457
           
Sbjct: 149  137

Query: 458  470
           
Sbjct: 209  137

[Close]

BLAST of MU50405 vs. NCBI nr
Match: gi|659095505|ref|XP_008448616.1| (PREDICTED: protein LTV1 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 2.0e-16
Identity = 51/56 (91.07%), Postives = 51/56 (91.07%), Query Frame = 1


Query: 187 VDASGSAC*DGDPNSTFADASEDYDEEENGGFGSSMQSRGEVGGTLSL-ENVRREI 246
           VDASGSAC D DPNS FADASEDYDEEENGGFGSSMQSRGEVGGT SL ENVRREI
Sbjct: 55  VDASGSACYDEDPNSIFADASEDYDEEENGGFGSSMQSRGEVGGTSSLPENVRREI 110

Query: 247  306
           
Sbjct: 115  110

Query: 307  352
           
Sbjct: 175  110

[Close]

BLAST of MU50405 vs. NCBI nr
Match: gi|307136049|gb|ADN33900.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 91.3 bits (225), Expect = 2.9e-15
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 190 DASGSAC*DGDPNSTFADASEDYDEEENGGFGSSMQSRGEVGGTLSLENVRREI 249
           DASGSAC D DPNS FADAS+DYDEEENGGFGSSMQSRGEVGG  S ENVRREI
Sbjct: 16  DASGSACYDEDPNSIFADASKDYDEEENGGFGSSMQSRGEVGGMSSPENVRREI 69

Query: 250  309
           
Sbjct: 76   69

Query: 310  352
           
Sbjct: 136  69

[Close]

BLAST of MU50405 vs. NCBI nr
Match: gi|449456741|ref|XP_004146107.1| (PREDICTED: protein LTV1 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 5.5e-14
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 1


Query: 187 VDASGSAC*DGDPNSTFADASEDYDEEENGGFGSSMQSRGEVGGTLSL-ENVRREI 246
           VDASGSAC D DPNS FADASEDYDEEENGGFGSSMQ  G+VGGT SL ENVR++I
Sbjct: 55  VDASGSACYDEDPNSIFADASEDYDEEENGGFGSSMQFSGDVGGTSSLPENVRKDI 110

Query: 247  306
           
Sbjct: 115  110

Query: 307  352
           
Sbjct: 175  110

[Close]

BLAST of MU50405 vs. NCBI nr
Match: gi|1009135080|ref|XP_015884793.1| (PREDICTED: protein LTV1 homolog [Ziziphus jujuba])

HSP 1 Score: 66.6 bits (161), Expect = 7.7e-08
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 2


Query: 338 LEERFLEL*FPDDGYNYLLHLREIKNTGG-----ENP*AKLNHVPRDEKLLNRVYASSDS 397
           + +  LEL FPDDGYNYL HLREIKNTGG     +NP AKL+ +PRD K     Y +S  
Sbjct: 105 VRKEILELGFPDDGYNYLAHLREIKNTGGGSAFYQNPKAKLDQLPRDVK----AYDASRL 164

Query: 398 DGTDCDG 457
             +D DG
Sbjct: 165 HISDVDG 167

Query: 458  517
           
Sbjct: 225  167

Query: 518  524
           
Sbjct: 285  167

[Close]

BLAST of MU50405 vs. NCBI nr
Match: gi|697158223|ref|XP_009587866.1| (PREDICTED: protein LTV1 homolog [Nicotiana tomentosiformis])

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 2


Query: 338 LEERFLEL*FPDDGYNYLLHLREIKNTGG-----ENP*AKLNHVPRDEK 397
           + +  LEL FPDDGYNYL HLREIKNTGG     ENP AKLN +P D K
Sbjct: 90  VRKEILELGFPDDGYNYLTHLREIKNTGGGSAYYENPKAKLNELPHDVK 138

Query: 398  457
           
Sbjct: 150  138

Query: 458  470
           
Sbjct: 210  138

The following BLAST results are available for this feature:

BLAST of MU50405 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBQ8_CUCME	1.8e-16	87.04	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0L517_CUCSA	4.5e-15	82.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006680 PE=4 SV=1	[more]
A0A0A0L517_CUCSA	8.3e-09	79.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006680 PE=4 SV=1	[more]
M0ZWE7_SOLTU	5.9e-07	65.31	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003712 PE=4 SV=1	[more]
A0A0V0IJ83_SOLCH	5.9e-07	65.31	Uncharacterized protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of MU50405 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49990.1	4.1e-07	55.10	unknown protein	[more]

BLAST of MU50405 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095505\|ref\|XP_008448616.1\|	2.0e-16	91.07	PREDICTED: protein LTV1 homolog isoform X1 [Cucumis melo]	[more]
gi\|307136049\|gb\|ADN33900.1\|	2.9e-15	87.04	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|449456741\|ref\|XP_004146107.1\|	5.5e-14	82.14	PREDICTED: protein LTV1 homolog isoform X2 [Cucumis sativus]	[more]
gi\|1009135080\|ref\|XP_015884793.1\|	7.7e-08	53.73	PREDICTED: protein LTV1 homolog [Ziziphus jujuba]	[more]
gi\|697158223\|ref\|XP_009587866.1\|	1.7e-07	65.31	PREDICTED: protein LTV1 homolog [Nicotiana tomentosiformis]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018650	MELO3C018650	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
DA6YH18FM1	DA6YH18FM1	EST
DEa0005J23	DEa0005J23	EST
TEa0009F13	TEa0009F13	EST