MU45471 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU45471
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	No hit
Location	chr10 : 24968907 .. 24970623 (+)
Sequence length	970

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAATGAATACTGAGTGCTCTCAGCTGTTCATCGCCTCCGCCGTCACGGGTCTTCTTGTGGGTGCTGCCACCGCTGCGTCACTTTGCTGTGGGTCAGCACGTCTGTGAACAACAGTGTATTTGCTATACGTCATAGGGTTCGTTTCGTCACACGTGTAGTAGATCTGGACAGCGCCACTTTGAAAAAAAGCCGAATATCTTGGGCTAGGGTGGAAAGGTCTCTGGAGATTTGAATAGAGTGAGATTGATGATATGGAAGAAGAAAAGGAGAGAAGAAAGAGCTCATTGGGATCAGAAAAGAAGAAAAGGAGGAAGAGTTTGTCTGAATGGAGTAAAGGGGAAGAGCTAAATCTACTGAAGAAGCTTGTCGAGTTCAATAGCAAGAACATTAGTCGCGAGGAATTTTATCCGTTCTTGAGAAATGGGTCATTGGCGGAGGTGTCCAAGATCCAAATATTTGACAAGATTCAACAACTCAAAAGGGAATATTTGGAGAATAAATTAGAGTTGAGAAAAATGAGAAAACGAAATGTAAAATTGGAGGAGGATGATGATGATTATAATGATAAGAGAGACGAGGGCTTTGAGTTATCAAATCAACTTTGGGGTGAAGTTGATGAAACTGAAAGGGCTTCTAACTCTAAAGCGTTGGAGGTATGCAGTAGGAATTACTATGAAGGGTTTTTTGAAAGTTGTGGGCTTGATGTACAACTATTTGACCCATCTTTTCACGATGCAACCAAGAAGGATATTGACCATTTGTTCAATCTTGAACATCATGTAATCTTATCCAAAGCTAAGTTGACGGCTCAAATTCTTCAACTAAAGTACGACCTTATTCAAGCTCGTGTCAACAATCCTACCAATTAATAATCGCCCTTGTCCACCTCTCTCTCTTTTTTTTTCTGGCTCATATGTATCAAACATTTCCAAAATCTATTTATAGAATATGAAAGAGACTAGGAAAGTCT

Library


Library category	ESTs
melon 15d library	1
melon AI library	1

Homology

[Close]

BLAST of MU45471 vs. TrEMBL
Match: A0A0A0KPQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G078280 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.0e-44
Identity = 103/172 (59.88%), Postives = 120/172 (69.77%), Query Frame = 3


Query: 336 GEELNLLKKLVEFNSKNISREEFYPFLRNGSLAEVSKIQIFDKIQQLKREYLENKLELRK 395
           GEELNLLKKLVEFN+KNISREEFYPFLRNGSLAEVS+ QIF+KIQ+LKREYL+ KLELRK
Sbjct: 29  GEELNLLKKLVEFNTKNISREEFYPFLRNGSLAEVSRTQIFEKIQELKREYLKQKLELRK 88

Query: 396 MRKRNVKLXXXXXXXXXXXXXGFELSNQLWGEVDETERASNSKALEVCSRNYYEGFFESC 455
           MRKRNVK+             GFELSN++WG+VDETERAS SK LE              
Sbjct: 89  MRKRNVKM-EDDDDFNNKRDEGFELSNEVWGKVDETERASISKVLE-------------- 148

Query: 456 GLDVQLFDPSFHDATKKDIDHLFNLEHHVILSKAKLTAQILQLKYDLIQARV 515
                       DA KKDID LFNLEH   L K+KL +++++LK D+IQA +
Sbjct: 149 ------------DAAKKDIDRLFNLEHQAFLFKSKLVSKLVKLKNDIIQAPI 173

Query: 516  575
           
Sbjct: 209  173

Query: 576  635
           
Sbjct: 269  173

Query: 636  695
           
Sbjct: 329  173

Query: 696  755
           
Sbjct: 389  173

Query: 756  815
           
Sbjct: 449  173

Query: 816  852
           
Sbjct: 509  173

[Close]

BLAST of MU45471 vs. NCBI nr
Match: gi|700194534|gb|KGN49711.1| (hypothetical protein Csa_5G078280 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 1.9e-42
Identity = 103/172 (59.88%), Postives = 120/172 (69.77%), Query Frame = 3


Query: 336 GEELNLLKKLVEFNSKNISREEFYPFLRNGSLAEVSKIQIFDKIQQLKREYLENKLELRK 395
           GEELNLLKKLVEFN+KNISREEFYPFLRNGSLAEVS+ QIF+KIQ+LKREYL+ KLELRK
Sbjct: 29  GEELNLLKKLVEFNTKNISREEFYPFLRNGSLAEVSRTQIFEKIQELKREYLKQKLELRK 88

Query: 396 MRKRNVKLXXXXXXXXXXXXXGFELSNQLWGEVDETERASNSKALEVCSRNYYEGFFESC 455
           MRKRNVK+             GFELSN++WG+VDETERAS SK LE              
Sbjct: 89  MRKRNVKM-EDDDDFNNKRDEGFELSNEVWGKVDETERASISKVLE-------------- 148

Query: 456 GLDVQLFDPSFHDATKKDIDHLFNLEHHVILSKAKLTAQILQLKYDLIQARV 515
                       DA KKDID LFNLEH   L K+KL +++++LK D+IQA +
Sbjct: 149 ------------DAAKKDIDRLFNLEHQAFLFKSKLVSKLVKLKNDIIQAPI 173

Query: 516  575
           
Sbjct: 209  173

Query: 576  635
           
Sbjct: 269  173

Query: 636  695
           
Sbjct: 329  173

Query: 696  755
           
Sbjct: 389  173

Query: 756  815
           
Sbjct: 449  173

Query: 816  852
           
Sbjct: 509  173

The following BLAST results are available for this feature:

BLAST of MU45471 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPQ5_CUCSA	7.0e-44	59.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G078280 PE=4 SV=1	[more]

BLAST of MU45471 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194534\|gb\|KGN49711.1\|	1.9e-42	59.88	hypothetical protein Csa_5G078280 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR007592	GEBP

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C022945	MELO3C022945	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
15D03E03	15D03E03	EST
AI17H02	AI17H02	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007592	Protein of unknown function DUF573	PFAM	PF04504	DUF573	coord: 26..119 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 72..106 scor