MELO3C022945 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022945
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA-binding storekeeper protein-related transcriptional regulator
Location	chr10 : 24968839 .. 24970910 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATGTTTGAGCGGGAGAAATTTTGCCCAATTATTATTTATGTGCCCAAATCCTGGTCTCTTTTTACTAAATGAATACTGAGTGCTCTCAGCTGTTCATCGCCTCCGCCGTCACGGGTCTTCTTGTGGGTGCTGCCACCGCTGCGTCACTTTGCTGTGGGTCAGCACGTCTGTGAACAACAGTGTATTTGCTATACGTCATAGGGTTCGTTTCGTCACACGTGTAGTAGATCTGGACAGCGCCACTTTGTAAGTCTAGGGTAAACTCGATCTGATACCTAATCCTCCGTTTTTCGTACTTAAATTTCTAAATCATTGGTTGCTTTTGCAGGAAAAAAAGCCGAATATCTTGGGCTAGGGTGGAAAGGTCTCTGGGTATGTTCTTTTTTATTTTATTTCAACCCTAAGCATCACCATTCAAACTATCACTTTTTTTTTGAAGCGTTGTATTCATCAAGATTGTTTGTTGTACCCAAAAAATAGATGCAGCAACATAAAAAAGAATTTCTTCGTTTATTTTTTTTTTGTTGAATTTCTTTAAATTGAAACTTTTCTGTTTGATACTGAGTGATTCTGTATGTGAACATGTATTTTTCAAATACTCTTGTTCTCTGTTTTTCTCGTTCTCTGTTTTTCTCTCTTTGTTCCAGATTTTGTGTAGCTTGAGCTTCTGTTTGATAAAAAATCATTTAAGCTATGAAATTATGCTACACCTTTAGAGCATGCTGCTATGTAAGAGAGAAAAACCAATTTTCTATCTCCTAATGAACCTCAAAAGTAGACTATGGGTGATGTTGAAATATATCACGCAAACACTAATTAAGGAGATGTTTGCAAGATCTAATCTAATATGTTTTCTTTCTATTATTCTATTTCTCTAATTAATTTTCAATTGTTGGACTTGTTTGAACAATTGGAAAAGGTATTTGGTGCTAATAATTTGTATGTCACGGAGTTTGGAAAGCTGTATCAATGTTACTGCACGTCTTGATATTATGCAATTTAATTGTTCTTACTCGATCTGTTTTTTTTTTCTTTTTAGAGATTTGAATAGGGTGAGATTGATGATATGGAAGAAGAAAAGGAGAGAAGAAAGAGCTCATTGGGATCAGAAAAGAAGAAAAGGAGGAAGAGTTTGTTTGAATGGAGTAAAGGGGAAGAGCTAAATCTACTGAAGAAGCTTGTCGAGTTCAATAGCAAGAACATTAGTCGCGAGGAATTTTATCCGTTCTTGAGAAATGGGTCATTGGCGGAGGTGTCCAAGATCCAAATATTTGACAAGATTCAACAACTCAAAAGCGAATATTTGGAGAATAAATTAGAGTTGAGAAAAATGAGAAAACGAAATGTAAAATTGGAGGATGATGATGATTATAATGATAAGAGAGACGAGGGCTTTGAGTTATCAAATCAACTTTGGGGTGAAGTTGATGAAACTGAAAGGGCTTCTAACTCTAAAGCGTTGGAGGTATGCAGTAGGAATTACTACGAAGGGTTTTTTGAAAGTTGTGGGCTTGATGTACAACTATTTGACCCATCTTTTCACGATGCAACCAAGAAGGATATTGACCATTTGTTCAATCTTGAACATCATGTAATCTTATCCAAAGCTAAGTTGACGGCTCAAATTCTTCAACTAAAGTACGACCTTATTCAAGCTCGTGTCAACAATCCTACCAATTAATAATCGCCCTTGTCCACCTCTCTCTCTTTTTTTTTCTGGCTCATATGTATCAAACATTTCCAAAATCTATTTATAGAATATGAAAGAGACTAGGAAAGTCTTTTATGATTTATTTTCGTTCACAGTTACAATTTCTTTAATTTTTTTATAAATACATGGTTGGATCAGTTTTCCATTATAATTCGAACCAATGCAAATTGAATGTATCTTTCAGTTTCCTTTTTCTTCATTTATTCTAATTAAAAAGAAACAGAGAAAGATGACGAAGACCAAATGGCGAAAACAAAGCAACAAAAGAGATCCAAAGAGTTCTCGAGCCATTAGTGACTTTTTCAAAGTGCAGCAATTGTCCTCTGTGATATTGAATAGTAAGTTTCTCACTTCTTTTA

mRNA sequence

AGATGTTTGAGCGGGAGAAATTTTGCCCAATTATTATTTATGTGCCCAAATCCTGGTCTCTTTTTACTAAATGAATACTGAGTGCTCTCAGCTGTTCATCGCCTCCGCCGTCACGGGTCTTCTTGTGGGTGCTGCCACCGCTGCGTCACTTTGCTGTGGGTCAGCACGTCTGTGAACAACAGTGTATTTGCTATACGTCATAGGGTTCGTTTCGTCACACGTGTAGTAGATCTGGACAGCGCCACTTTGAAAAAAAGCCGAATATCTTGGGCTAGGGTGGAAAGGTCTCTGGAGATTTGAATAGGGTGAGATTGATGATATGGAAGAAGAAAAGGAGAGAAGAAAGAGCTCATTGGGATCAGAAAAGAAGAAAAGGAGGAAGAGTTTGTTTGAATGGAGTAAAGGGGAAGAGCTAAATCTACTGAAGAAGCTTGTCGAGTTCAATAGCAAGAACATTAGTCGCGAGGAATTTTATCCGTTCTTGAGAAATGGGTCATTGGCGGAGGTGTCCAAGATCCAAATATTTGACAAGATTCAACAACTCAAAAGCGAATATTTGGAGAATAAATTAGAGTTGAGAAAAATGAGAAAACGAAATGTAAAATTGGAGGATGATGATGATTATAATGATAAGAGAGACGAGGGCTTTGAGTTATCAAATCAACTTTGGGGTGAAGTTGATGAAACTGAAAGGGCTTCTAACTCTAAAGCGTTGGAGGTATGCAGTAGGAATTACTACGAAGGGTTTTTTGAAAGTTGTGGGCTTGATGTACAACTATTTGACCCATCTTTTCACGATGCAACCAAGAAGGATATTGACCATTTGTTCAATCTTGAACATCATGTAATCTTATCCAAAGCTAAGTTGACGGCTCAAATTCTTCAACTAAAGTACGACCTTATTCAAGCTCGTGTCAACAATCCTACCAATTAATAATCGCCCTTGTCCACCTCTCTCTCTTTTTTTTTCTGGCTCATATGTATCAAACATTTCCAAAATCTATTTATAGAATATGAAAGAGACTAGGAAAGTCTTTTATGATTTATTTTCGTTCACAGTTACAATTTCTTTAATTTTTTTATAAATACATGGTTGGATCAGTTTTCCATTATAATTCGAACCAATGCAAATTGAATGTATCTTTCAGTTTCCTTTTTCTTCATTTATTCTAATTAAAAAGAAACAGAGAAAGATGACGAAGACCAAATGGCGAAAACAAAGCAACAAAAGAGATCCAAAGAGTTCTCGAGCCATTAGTGACTTTTTCAAAGTGCAGCAATTGTCCTCTGTGATATTGAATAGTAAGTTTCTCACTTCTTTTA

Coding sequence (CDS)

ATGGAAGAAGAAAAGGAGAGAAGAAAGAGCTCATTGGGATCAGAAAAGAAGAAAAGGAGGAAGAGTTTGTTTGAATGGAGTAAAGGGGAAGAGCTAAATCTACTGAAGAAGCTTGTCGAGTTCAATAGCAAGAACATTAGTCGCGAGGAATTTTATCCGTTCTTGAGAAATGGGTCATTGGCGGAGGTGTCCAAGATCCAAATATTTGACAAGATTCAACAACTCAAAAGCGAATATTTGGAGAATAAATTAGAGTTGAGAAAAATGAGAAAACGAAATGTAAAATTGGAGGATGATGATGATTATAATGATAAGAGAGACGAGGGCTTTGAGTTATCAAATCAACTTTGGGGTGAAGTTGATGAAACTGAAAGGGCTTCTAACTCTAAAGCGTTGGAGGTATGCAGTAGGAATTACTACGAAGGGTTTTTTGAAAGTTGTGGGCTTGATGTACAACTATTTGACCCATCTTTTCACGATGCAACCAAGAAGGATATTGACCATTTGTTCAATCTTGAACATCATGTAATCTTATCCAAAGCTAAGTTGACGGCTCAAATTCTTCAACTAAAGTACGACCTTATTCAAGCTCGTGTCAACAATCCTACCAATTAA

Protein sequence

MEEEKERRKSSLGSEKKKRRKSLFEWSKGEELNLLKKLVEFNSKNISREEFYPFLRNGSLAEVSKIQIFDKIQQLKSEYLENKLELRKMRKRNVKLEDDDDYNDKRDEGFELSNQLWGEVDETERASNSKALEVCSRNYYEGFFESCGLDVQLFDPSFHDATKKDIDHLFNLEHHVILSKAKLTAQILQLKYDLIQARVNNPTN*

Homology

[Close]

BLAST of MELO3C022945 vs. TrEMBL
Match: A0A0A0KPQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G078280 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.7e-67
Identity = 137/204 (67.16%), Postives = 158/204 (77.45%), Query Frame = 1


Query: 1   MEEEKERRKSSLGSEKKKRRKSLFEWSKGEELNLLKKLVEFNSKNISREEFYPFLRNGSL 60
           MEE KE RK S GS KKKRRKSLFEWSKGEELNLLKKLVEFN+KNISREEFYPFLRNGSL
Sbjct: 1   MEEGKEGRKRSTGSGKKKRRKSLFEWSKGEELNLLKKLVEFNTKNISREEFYPFLRNGSL 60

Query: 61  AEVSKIQIFDKIQQLKSEYLENKLELRKMRKRNVKLEDDDDYNDKRDEGFELSNQLWGEV 120
           AEVS+ QIF+KIQ+LK EYL+ KLELRKMRKRNVK+EDDDD+N+KRDEGFELSN++WG+V
Sbjct: 61  AEVSRTQIFEKIQELKREYLKQKLELRKMRKRNVKMEDDDDFNNKRDEGFELSNEVWGKV 120

Query: 121 DETERASNSKALEVCSRNYYEGFFESCGLDVQLFDPSFHDATKKDIDHLFNLEHHVILSK 180
           DETERAS SK LE                          DA KKDID LFNLEH   L K
Sbjct: 121 DETERASISKVLE--------------------------DAAKKDIDRLFNLEHQAFLFK 178

Query: 181 AKLTAQILQLKYDLIQARVNNPTN 205
           +KL +++++LK D+IQA + +PT+
Sbjct: 181 SKLVSKLVKLKNDIIQAPITDPTH 178

[Close]

BLAST of MELO3C022945 vs. TAIR10
Match: AT5G14280.1 (AT5G14280.1 DNA-binding storekeeper protein-related)

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 33/125 (26.40%), Postives = 62/125 (49.60%), Query Frame = 1


Query: 2   EEEKERRKSSLGSEKKKRRKSLFEWSKGEELNLLKKLVEFNSK-----NISREEFYPFLR 61
           E +K+++K +  + K     S   W++ +EL++LK LV+F +K      I  + FY +++
Sbjct: 41  ETKKKKKKKTKHNTKMASPPSNRIWNEEDELSILKGLVDFRAKTGLESKIDWDAFYCYVK 100

Query: 62  NGSLAEVSKIQIFDKIQQLKSEYLENKLELRKMRKRNVKLEDDDDYNDKRDEGFELSNQL 121
                +VSK Q+  K ++LK ++L+   ++ K+ + N    D         E F  S  +
Sbjct: 101 GSIHVKVSKCQLMSKTRKLKKKFLD---QMEKIDQGN----DPHFTRSSETEAFGYSMMI 158

[Close]

BLAST of MELO3C022945 vs. NCBI nr
Match: gi|700194534|gb|KGN49711.1| (hypothetical protein Csa_5G078280 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 2.4e-67
Identity = 137/204 (67.16%), Postives = 158/204 (77.45%), Query Frame = 1


Query: 1   MEEEKERRKSSLGSEKKKRRKSLFEWSKGEELNLLKKLVEFNSKNISREEFYPFLRNGSL 60
           MEE KE RK S GS KKKRRKSLFEWSKGEELNLLKKLVEFN+KNISREEFYPFLRNGSL
Sbjct: 1   MEEGKEGRKRSTGSGKKKRRKSLFEWSKGEELNLLKKLVEFNTKNISREEFYPFLRNGSL 60

Query: 61  AEVSKIQIFDKIQQLKSEYLENKLELRKMRKRNVKLEDDDDYNDKRDEGFELSNQLWGEV 120
           AEVS+ QIF+KIQ+LK EYL+ KLELRKMRKRNVK+EDDDD+N+KRDEGFELSN++WG+V
Sbjct: 61  AEVSRTQIFEKIQELKREYLKQKLELRKMRKRNVKMEDDDDFNNKRDEGFELSNEVWGKV 120

Query: 121 DETERASNSKALEVCSRNYYEGFFESCGLDVQLFDPSFHDATKKDIDHLFNLEHHVILSK 180
           DETERAS SK LE                          DA KKDID LFNLEH   L K
Sbjct: 121 DETERASISKVLE--------------------------DAAKKDIDRLFNLEHQAFLFK 178

Query: 181 AKLTAQILQLKYDLIQARVNNPTN 205
           +KL +++++LK D+IQA + +PT+
Sbjct: 181 SKLVSKLVKLKNDIIQAPITDPTH 178

[Close]

BLAST of MELO3C022945 vs. NCBI nr
Match: gi|1009165572|ref|XP_015901112.1| (PREDICTED: uncharacterized protein LOC107434195 [Ziziphus jujuba])

HSP 1 Score: 65.9 bits (159), Expect = 9.7e-08
Identity = 40/138 (28.99%), Postives = 72/138 (52.17%), Query Frame = 1


Query: 4   EKERRKSSLGSEKKKRRKSLFEWSKGEELNLLKKLVEFNS------KNISREEFYPFLRN 63
           + E  +  +  EKK+R K +  WS+ +E+ +L+ L++         K  +  +FY  +++
Sbjct: 22  DSEEEEEYVPEEKKRRNKKITVWSEKDEITILEGLIKLQKICSSLGKKSNMNQFYSLIKD 81

Query: 64  GSLAEVSKIQIFDKIQQLKSEYLENKLELRKMRKRNVKLEDDDDYNDKRDEGFELSNQLW 123
             +A+VS  Q  DKI++LK ++++NK    K+   N+ +    DY+      FELS Q+W
Sbjct: 82  SLVADVSSEQFTDKIKRLKRKFMQNK--KNKLADPNLSI----DYDSHSKRVFELSKQMW 141

Query: 124 GE-VDETERASNSKALEV 135
            + V E E     K  E+
Sbjct: 142 DQCVWEPESEEKRKTKEM 153

The following BLAST results are available for this feature:

BLAST of MELO3C022945 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPQ5_CUCSA	1.7e-67	67.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G078280 PE=4 SV=1	[more]

BLAST of MELO3C022945 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14280.1	1.1e-06	26.40	DNA-binding storekeeper protein-related	[more]

BLAST of MELO3C022945 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194534\|gb\|KGN49711.1\|	2.4e-67	67.16	hypothetical protein Csa_5G078280 [Cucumis sativus]	[more]
gi\|1009165572\|ref\|XP_015901112.1\|	9.7e-08	28.99	PREDICTED: uncharacterized protein LOC107434195 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007592	GEBP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU45471	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022945T1	MELO3C022945T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU45471	MU45471	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007592	Protein of unknown function DUF573	PFAM	PF04504	DUF573	coord: 26..118 score: 2.
None	No IPR available	unknown	Coil	Coil	coord: 72..92 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022945	Cucurbita pepo (Zucchini)	cpemeB371
MELO3C022945	Cucumber (Gy14) v2	cgybmeB325
MELO3C022945	Bottle gourd (USVL1VR-Ls)	lsimeB082
MELO3C022945	Cucumber (Chinese Long) v3	cucmeB388
MELO3C022945	Watermelon (97103) v2	mewmbB050
MELO3C022945	Watermelon (97103) v2	mewmbB052
MELO3C022945	Wax gourd	mewgoB088
MELO3C022945	Cucumber (Gy14) v1	cgymeB330
MELO3C022945	Cucurbita maxima (Rimu)	cmameB646
MELO3C022945	Cucurbita moschata (Rifu)	cmomeB639
MELO3C022945	Wild cucumber (PI 183967)	cpimeB376
MELO3C022945	Cucumber (Chinese Long) v2	cumeB381
MELO3C022945	Watermelon (Charleston Gray)	mewcgB046
MELO3C022945	Watermelon (Charleston Gray)	mewcgB050
MELO3C022945	Watermelon (97103) v1	mewmB073
MELO3C022945	Watermelon (97103) v1	mewmB080