MU44038 (transcribed_cluster) Melon (DHL92) v3.5.1

Overview
NameMU44038
Typetranscribed_cluster
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionArabinogalactan protein 20
Locationchr6 : 840406 .. 841076 (-)
Sequence length682
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GCCCCACTACTCTCCTCTCCTTCTTCTAACCATTTGGATTTTGATCAGTGCTTCCACACAAATTCCCCTCCTTTTGGAGAAGGAGAATTCGACCATCCATCAATGGCGTCTTCCAATCCTACTACTAGGGCTTTCAAAGCTCTCTTCACCATCTTCTCTCTCATCTTCTTCATTCTTTCTCCACTCGTTGACGCCGCAGCACCTGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTAGCGACGGTATCTACCTACATTCCTTGTTTATGCATTCTCCTTCTCTTCTTTGTTGATTGATACTGAGTAAACTAGGTCTTGCTTTCAAATTATTAGGGTTAGGGATTTCTGTTGTGAGAAAAATAAGGGAATAATGTTTTGATTTTGTAATTGTGAAAACAGGGACCTCCATTGATCAGGGGATTGCGTACGTTCTGATGCTAGTGGCGTTGGTTCTCACGTATCTAATTCACCCTCTCGATGCATCTTTCTTACAATTTTTTTCTGAATTGAATTGAATTCTTCTTCCTAGGATTGTAGCAATGTAGGCGTTGTTTGTGGACGTTTGAGAAGGAACGAGAACCATTTATTCTTCTCTCTTTTTGTGATAAAATCAAAAGTGTATATTTGGGTTCCACAGATTTTGATCAATTGCTCCATTTAATTCATTGTTTATTC
Homology
[Close]
BLAST of MU44038 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-07
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDAS 465
           GTSIDQGIAY+LM+VALVLTYLIHPLDAS
Sbjct: 39  GTSIDQGIAYLLMVVALVLTYLIHPLDAS 67

Query: 466  493
           
Sbjct: 99   67

[Close]
BLAST of MU44038 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-07
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDAS 465
           GTSIDQGIAY+LM+VALVLTYLIHPLDAS
Sbjct: 39  GTSIDQGIAYLLMVVALVLTYLIHPLDAS 67

Query: 466  493
           
Sbjct: 99   67

[Close]
BLAST of MU44038 vs. TrEMBL
Match: A0A061DUP4_THECC (Arabinogalactan protein 20 OS=Theobroma cacao GN=TCM_005200 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.3e-07
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF 465
           GTSIDQGIAYVLMLVALVLTYLIHPLDAS   FF
Sbjct: 42  GTSIDQGIAYVLMLVALVLTYLIHPLDASSYSFF 75

Query: 466  508
           
Sbjct: 102  75

[Close]
BLAST of MU44038 vs. TrEMBL
Match: W9S2G2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003071 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF 465
           GTSIDQG+AYVLMLVALVLTYLIHPLDAS   FF
Sbjct: 43  GTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFF 76

Query: 466  508
           
Sbjct: 103  76

[Close]
BLAST of MU44038 vs. TrEMBL
Match: A0A0D2TCU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105900 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF 465
           GTSIDQGIAYVLMLVALVLTYLIHPLDAS   FF
Sbjct: 42  GTSIDQGIAYVLMLVALVLTYLIHPLDASSYTFF 75

Query: 466  508
           
Sbjct: 102  75

[Close]
BLAST of MU44038 vs. TrEMBL
Match: A5BTA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01360 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF 465
           GT+IDQGIAYVLMLVALVLTYLIHPLDAS   FF
Sbjct: 42  GTAIDQGIAYVLMLVALVLTYLIHPLDASSYSFF 75

Query: 466  508
           
Sbjct: 102  75

[Close]
BLAST of MU44038 vs. TrEMBL
Match: A0A0A0L7A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120410 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF 465
           GTSIDQGIAYVLML+ALVLTYLIHPLDAS   FF
Sbjct: 43  GTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFF 76

Query: 466  508
           
Sbjct: 103  76

[Close]
BLAST of MU44038 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDAS 465
           GTSIDQGIAY+LM+VALVLTYLIHPLDAS
Sbjct: 39  GTSIDQGIAYLLMVVALVLTYLIHPLDAS 67

Query: 466  493
           
Sbjct: 99   67

[Close]
BLAST of MU44038 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDAS 465
           GTSIDQGIAY+LM+VALVLTYLIHPLDAS
Sbjct: 39  GTSIDQGIAYLLMVVALVLTYLIHPLDAS 67

Query: 466  493
           
Sbjct: 99   67

[Close]
BLAST of MU44038 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41)

HSP 1 Score: 48.1 bits (113), Expect = 8.2e-06
Identity = 23/24 (95.83%), Postives = 22/24 (91.67%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIH 465
           GT+IDQGIAYVLMLVALVLTYLIH
Sbjct: 40  GTTIDQGIAYVLMLVALVLTYLIH 63

Query: 466  478
           
Sbjct: 100  63

[Close]
BLAST of MU44038 vs. NCBI nr
Match: gi|1009143676|ref|XP_015889389.1| (PREDICTED: arabinogalactan peptide 20-like [Ziziphus jujuba])

HSP 1 Score: 60.1 bits (144), Expect = 5.9e-06
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF 465
           GTSIDQGIAYVLMLVALVLTYLIHPLDAS   FF
Sbjct: 43  GTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF 76

Query: 466  508
           
Sbjct: 103  76

[Close]
BLAST of MU44038 vs. NCBI nr
Match: gi|720033434|ref|XP_010266430.1| (PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera])

HSP 1 Score: 60.1 bits (144), Expect = 5.9e-06
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF 465
           GTSIDQGIAYVLMLVALVLTYLIHPLDAS   FF
Sbjct: 40  GTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF 73

Query: 466  508
           
Sbjct: 100  73

[Close]
BLAST of MU44038 vs. NCBI nr
Match: gi|590721494|ref|XP_007051629.1| (Arabinogalactan protein 20 [Theobroma cacao])

HSP 1 Score: 60.1 bits (144), Expect = 5.9e-06
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF 465
           GTSIDQGIAYVLMLVALVLTYLIHPLDAS   FF
Sbjct: 42  GTSIDQGIAYVLMLVALVLTYLIHPLDASSYSFF 75

Query: 466  508
           
Sbjct: 102  75

[Close]
BLAST of MU44038 vs. NCBI nr
Match: gi|703148852|ref|XP_010109451.1| (hypothetical protein L484_003071 [Morus notabilis])

HSP 1 Score: 59.7 bits (143), Expect = 7.7e-06
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF 465
           GTSIDQG+AYVLMLVALVLTYLIHPLDAS   FF
Sbjct: 43  GTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFF 76

Query: 466  508
           
Sbjct: 103  76

[Close]
BLAST of MU44038 vs. NCBI nr
Match: gi|823187080|ref|XP_012490068.1| (PREDICTED: arabinogalactan peptide 20-like [Gossypium raimondii])

HSP 1 Score: 59.7 bits (143), Expect = 7.7e-06
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 406 GTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF 465
           GTSIDQGIAYVLMLVALVLTYLIHPLDAS   FF
Sbjct: 42  GTSIDQGIAYVLMLVALVLTYLIHPLDASSYTFF 75

Query: 466  508
           
Sbjct: 102  75

The following BLAST results are available for this feature:
BLAST of MU44038 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP16_ARATH4.1e-0793.10Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1[more]
AGP20_ARATH4.1e-0793.10Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1[more]
BLAST of MU44038 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061DUP4_THECC8.3e-0791.18Arabinogalactan protein 20 OS=Theobroma cacao GN=TCM_005200 PE=4 SV=1[more]
W9S2G2_9ROSA1.1e-0688.24Uncharacterized protein OS=Morus notabilis GN=L484_003071 PE=4 SV=1[more]
A0A0D2TCU0_GOSRA1.1e-0691.18Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105900 PE=4 SV=1[more]
A5BTA7_VITVI1.8e-0688.24Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01360 PE=4 SV=... [more]
A0A0A0L7A0_CUCSA1.8e-0688.24Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120410 PE=4 SV=1[more]
BLAST of MU44038 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46330.12.3e-0893.10 arabinogalactan protein 16[more]
AT3G61640.12.3e-0893.10 arabinogalactan protein 20[more]
AT5G24105.18.2e-0695.83 arabinogalactan protein 41[more]
BLAST of MU44038 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1009143676|ref|XP_015889389.1|5.9e-0691.18PREDICTED: arabinogalactan peptide 20-like [Ziziphus jujuba][more]
gi|720033434|ref|XP_010266430.1|5.9e-0691.18PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera][more]
gi|590721494|ref|XP_007051629.1|5.9e-0691.18Arabinogalactan protein 20 [Theobroma cacao][more]
gi|703148852|ref|XP_010109451.1|7.7e-0688.24hypothetical protein L484_003071 [Morus notabilis][more]
gi|823187080|ref|XP_012490068.1|7.7e-0691.18PREDICTED: arabinogalactan peptide 20-like [Gossypium raimondii][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
MELO3C006062MELO3C006062gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
GA3YO09FM1GA3YO09FM1EST
PS14A12PS14A12EST