CU172492 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU172492
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Cyclin d protein
Location	Chr4 : 108973 .. 109410 (-)
Sequence length	223

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCAATCCCAGCTCCACCACATGCCCCGCCTCGACTACCTCCGCCGCTGCCGTGACCACTCCATCGACCTCACTGCCCGTCAAGACTCCATCAACTGGATCTTGATGGTTCTCTCCCACTACAATTTCAAACCGGTGACTGCGATTCTCTCTGTTAATTACTTTGATCGCTTCCTCTCCTCCAATATTCTTCCACGGCGAAATGGATGGGCGTTTCAGCTTCTA

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU172492 vs. Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3)

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-15
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 2


Query: 2   QSQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSS 61
           + + H +P  DYL R +  S+D +AR+DS+ WIL V ++YNF+P+TA L+VNY DRFL +
Sbjct: 57  EDERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYA 116

Query: 62  NILPRRNGWAFQLL 121
             LP  +GW  QLL
Sbjct: 117 RRLPETSGWPMQLL 130

Query: 122  181
           
Sbjct: 177  130

Query: 182  224
           
Sbjct: 237  130

[Close]

BLAST of CU172492 vs. Swiss-Prot
Match: CCD21_ORYSJ (Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-13
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 2


Query: 8   QLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSSNI 67
           +  + PR DY  R R  SID  AR +S++WIL V  +  F P+TA L+VNY DRFLS   
Sbjct: 59  EAEYSPRSDYPDRLRSRSIDPAARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRH 118

Query: 68  LPRRNGWAFQLL 127
           LP   GWA QLL
Sbjct: 119 LPEGQGWAMQLL 130

Query: 128  187
           
Sbjct: 179  130

Query: 188  224
           
Sbjct: 239  130

[Close]

BLAST of CU172492 vs. Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-12
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 2


Query: 2   QSQLHHMPRLDYLRRCR----DHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDR 61
           +++  HMPR DY  R R    D  +DL  R D+I+WI  V S+Y+F P+TA L+VNY DR
Sbjct: 74  ETEADHMPREDYAERLRAGGGDGDLDLRVRMDAIDWIWKVHSYYSFAPLTACLAVNYLDR 133

Query: 62  FLSSNILPRRNGWAFQLL 121
           FLS   LP    W  QLL
Sbjct: 134 FLSLYQLPDGKDWMTQLL 151

Query: 122  181
           
Sbjct: 194  151

Query: 182  224
           
Sbjct: 254  151

[Close]

BLAST of CU172492 vs. Swiss-Prot
Match: CCD12_ORYSJ (Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-11
Identity = 39/75 (52.00%), Postives = 44/75 (58.67%), Query Frame = 2


Query: 2   QSQLHHMPRLDYLRRCRD-HSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLS 61
           +++  H PR DY  R R     DL AR DS+ WIL V   Y   PVTA L+V+Y DRFLS
Sbjct: 90  EAERSHSPRADYPGRLRSGRPADLAARADSVAWILKVRELYGMLPVTAYLAVSYMDRFLS 149

Query: 62  SNILPRRNGWAFQLL 121
            + LP  NGWA QLL
Sbjct: 150 LHRLP-GNGWAMQLL 163

Query: 122  181
           
Sbjct: 210  163

Query: 182  224
           
Sbjct: 270  163

[Close]

BLAST of CU172492 vs. Swiss-Prot
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-11
Identity = 36/71 (50.70%), Postives = 40/71 (56.34%), Query Frame = 2


Query: 17  HMPRLDYLRRCRDHS--IDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSSNIL 76
           HMPR DY  R R     +DL  R ++I WI  V ++YNF  VTA L+VNY DRFLS   L
Sbjct: 88  HMPRADYGERLRGGGGDVDLRVRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYEL 147

Query: 77  PRRNGWAFQLL 136
           P    W  QLL
Sbjct: 148 PEGRDWMTQLL 158

Query: 137  196
           
Sbjct: 208  158

Query: 197  224
           
Sbjct: 268  158

[Close]

BLAST of CU172492 vs. TrEMBL
Match: A0A0A0KSY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000660 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.2e-35
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 2


Query: 2   QSQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSS 61
           QSQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMV SHYNFKPVTAILSVNYFDRFLSS
Sbjct: 42  QSQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVHSHYNFKPVTAILSVNYFDRFLSS 101

Query: 62  NILPRRNGWAFQLL 121
           NILPRRNGWAFQLL
Sbjct: 102 NILPRRNGWAFQLL 115

Query: 122  181
           
Sbjct: 162  115

Query: 182  224
           
Sbjct: 222  115

[Close]

BLAST of CU172492 vs. TrEMBL
Match: E5GBG8_CUCME (Cyclin d protein OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-33
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 2


Query: 2   QSQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSS 61
           QS+LHHMPR+DYLRRCRDHSID+TARQDSINWIL V SHYNFKPVTAILSVNYFDRFLSS
Sbjct: 50  QSELHHMPRIDYLRRCRDHSIDVTARQDSINWILKVHSHYNFKPVTAILSVNYFDRFLSS 109

Query: 62  NILPRRNGWAFQLL 121
           NILPRRNGWAFQLL
Sbjct: 110 NILPRRNGWAFQLL 123

Query: 122  181
           
Sbjct: 170  123

Query: 182  224
           
Sbjct: 230  123

[Close]

BLAST of CU172492 vs. TrEMBL
Match: A0A0D2SM42_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G230300 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.9e-22
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2


Query: 5   SQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSSN 64
           S+ HHMP  DYLRRC+D S+D+ +RQDSINW+L V +HY+F PVTA LSVNYFDR+LSS 
Sbjct: 77  SESHHMPLPDYLRRCQDRSVDVISRQDSINWMLKVHAHYHFSPVTAFLSVNYFDRYLSSY 136

Query: 65  ILPRRNGWAFQLL 124
            LP+ NGW FQLL
Sbjct: 137 SLPQANGWPFQLL 149

Query: 125  184
           
Sbjct: 197  149

Query: 185  224
           
Sbjct: 257  149

[Close]

BLAST of CU172492 vs. TrEMBL
Match: A0A067LJP7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16352 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-21
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2


Query: 5   SQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSSN 64
           S+ H +P  DYL RCRD  ID+TARQDSINWIL V ++Y+F+PVT +LSVNYFDRFLSS+
Sbjct: 65  SEPHFLPLADYLHRCRDRFIDVTARQDSINWILKVHAYYHFRPVTVLLSVNYFDRFLSSH 124

Query: 65  ILPRRNGWAFQLL 124
            LP+ NGW FQLL
Sbjct: 125 SLPQANGWPFQLL 137

Query: 125  184
           
Sbjct: 185  137

Query: 185  224
           
Sbjct: 245  137

[Close]

BLAST of CU172492 vs. TrEMBL
Match: A0A0B0P1H1_GOSAR (Cyclin-D1-1-like protein OS=Gossypium arboreum GN=F383_24431 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-21
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 2


Query: 5   SQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSSN 64
           S+ HHMP  DYLRRC+D  +D+ +RQDSINW+L V +HY+F PVTA LSVNYFDR+LSS 
Sbjct: 82  SESHHMPLPDYLRRCQDRYVDVISRQDSINWMLKVHAHYHFSPVTAFLSVNYFDRYLSSY 141

Query: 65  ILPRRNGWAFQLL 124
            LP+ NGW FQLL
Sbjct: 142 SLPQANGWPFQLL 154

Query: 125  184
           
Sbjct: 202  154

Query: 185  224
           
Sbjct: 262  154

[Close]

BLAST of CU172492 vs. NCBI nr
Match: gi|449465087|ref|XP_004150260.1| (PREDICTED: cyclin-D4-1-like [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-35
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 2


Query: 2   QSQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSS 61
           QSQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMV SHYNFKPVTAILSVNYFDRFLSS
Sbjct: 42  QSQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVHSHYNFKPVTAILSVNYFDRFLSS 101

Query: 62  NILPRRNGWAFQLL 121
           NILPRRNGWAFQLL
Sbjct: 102 NILPRRNGWAFQLL 115

Query: 122  181
           
Sbjct: 162  115

Query: 182  224
           
Sbjct: 222  115

[Close]

BLAST of CU172492 vs. NCBI nr
Match: gi|659108835|ref|XP_008454410.1| (PREDICTED: cyclin-D4-2-like [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-33
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 2


Query: 2   QSQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSS 61
           QS+LHHMPR+DYLRRCRDHSID+TARQDSINWIL V SHYNFKPVTAILSVNYFDRFLSS
Sbjct: 50  QSELHHMPRIDYLRRCRDHSIDVTARQDSINWILKVHSHYNFKPVTAILSVNYFDRFLSS 109

Query: 62  NILPRRNGWAFQLL 121
           NILPRRNGWAFQLL
Sbjct: 110 NILPRRNGWAFQLL 123

Query: 122  181
           
Sbjct: 170  123

Query: 182  224
           
Sbjct: 230  123

[Close]

BLAST of CU172492 vs. NCBI nr
Match: gi|823160558|ref|XP_012480123.1| (PREDICTED: cyclin-D1-1-like [Gossypium raimondii])

HSP 1 Score: 112.5 bits (280), Expect = 3.3e-22
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2


Query: 5   SQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSSN 64
           S+ HHMP  DYLRRC+D S+D+ +RQDSINW+L V +HY+F PVTA LSVNYFDR+LSS 
Sbjct: 77  SESHHMPLPDYLRRCQDRSVDVISRQDSINWMLKVHAHYHFSPVTAFLSVNYFDRYLSSY 136

Query: 65  ILPRRNGWAFQLL 124
            LP+ NGW FQLL
Sbjct: 137 SLPQANGWPFQLL 149

Query: 125  184
           
Sbjct: 197  149

Query: 185  224
           
Sbjct: 257  149

[Close]

BLAST of CU172492 vs. NCBI nr
Match: gi|802550741|ref|XP_012093144.1| (PREDICTED: cyclin-D4-1-like isoform X1 [Jatropha curcas])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2


Query: 5   SQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSSN 64
           S+ H +P  DYL RCRD  ID+TARQDSINWIL V ++Y+F+PVT +LSVNYFDRFLSS+
Sbjct: 65  SEPHFLPLADYLHRCRDRFIDVTARQDSINWILKVHAYYHFRPVTVLLSVNYFDRFLSSH 124

Query: 65  ILPRRNGWAFQLL 124
            LP+ NGW FQLL
Sbjct: 125 SLPQANGWPFQLL 137

Query: 125  184
           
Sbjct: 185  137

Query: 185  224
           
Sbjct: 245  137

[Close]

BLAST of CU172492 vs. NCBI nr
Match: gi|728839289|gb|KHG18732.1| (Cyclin-D1-1 -like protein [Gossypium arboreum])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-21
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 2


Query: 5   SQLHHMPRLDYLRRCRDHSIDLTARQDSINWILMVLSHYNFKPVTAILSVNYFDRFLSSN 64
           S+ HHMP  DYLRRC+D  +D+ +RQDSINW+L V +HY+F PVTA LSVNYFDR+LSS 
Sbjct: 82  SESHHMPLPDYLRRCQDRYVDVISRQDSINWMLKVHAHYHFSPVTAFLSVNYFDRYLSSY 141

Query: 65  ILPRRNGWAFQLL 124
            LP+ NGW FQLL
Sbjct: 142 SLPQANGWPFQLL 154

Query: 125  184
           
Sbjct: 202  154

Query: 185  224
           
Sbjct: 262  154

The following BLAST results are available for this feature:

BLAST of CU172492 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCD11_ARATH	1.7e-15	50.00	Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3	[more]
CCD21_ORYSJ	3.6e-13	51.39	Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2	[more]
CCD41_ORYSJ	1.4e-12	48.72	Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2	[more]
CCD12_ORYSJ	2.0e-11	52.00	Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2	[more]
CCD42_ORYSJ	2.0e-11	50.70	Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2	[more]

BLAST of CU172492 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSY9_CUCSA	5.2e-35	98.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000660 PE=3 SV=1	[more]
E5GBG8_CUCME	2.2e-33	93.24	Cyclin d protein OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0D2SM42_GOSRA	3.9e-22	68.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G230300 PE=3 SV=1	[more]
A0A067LJP7_JATCU	1.5e-21	68.49	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16352 PE=3 SV=1	[more]
A0A0B0P1H1_GOSAR	1.9e-21	67.12	Cyclin-D1-1-like protein OS=Gossypium arboreum GN=F383_24431 PE=3 SV=1	[more]

BLAST of CU172492 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465087\|ref\|XP_004150260.1\|	5.7e-35	98.65	PREDICTED: cyclin-D4-1-like [Cucumis sativus]	[more]
gi\|659108835\|ref\|XP_008454410.1\|	2.4e-33	93.24	PREDICTED: cyclin-D4-2-like [Cucumis melo]	[more]
gi\|823160558\|ref\|XP_012480123.1\|	3.3e-22	68.49	PREDICTED: cyclin-D1-1-like [Gossypium raimondii]	[more]
gi\|802550741\|ref\|XP_012093144.1\|	1.2e-21	68.49	PREDICTED: cyclin-D4-1-like isoform X1 [Jatropha curcas]	[more]
gi\|728839289\|gb\|KHG18732.1\|	1.6e-21	67.12	Cyclin-D1-1 -like protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006671	Cyclin_N
IPR013763	Cyclin-like

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G000660	Csa4G000660	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0154315	H0154315	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006671	Cyclin, N-terminal	PFAM	PF00134	Cyclin_N	coord: 4..67 score: 1.5
IPR006671	Cyclin, N-terminal	PROSITE	PS00292	CYCLINS	coord: 27..58 scor
IPR013763	Cyclin-like	GENE3D	G3DSA:1.10.472.10		coord: 13..67 score: 5.8
IPR013763	Cyclin-like	unknown	SSF47954	Cyclin-like	coord: 3..67 score: 1.02
None	No IPR available	PANTHER	PTHR10177	CYCLINE	coord: 3..75 score: 1.3
None	No IPR available	PANTHER	PTHR10177:SF224	SUBFAMILY NOT NAMED	coord: 3..75 score: 1.3