CU171073 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU171073
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Adenine nucleotide alpha hydrolases-like protein
Location	Chr1 : 4089862 .. 4091708 (+)
Sequence length	264

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATTACTCTTCTTCATGTATTTCCTTCTACAAGATCCAAAGGTAGTTCCAAAGTTCGTAATCGCCGATTGAATGGCTATCAATTGGCCCTAACTTTCAGAGACCTCTGTAACACTTTCCCTAATACAAAGGTAGAAATTGTTGTGACGGAAGGCGATCAAGAAGGTAGAAAGATCACGGCCATTGTTAGAGAAATTGGAGCTTCTGTGCTTGTAGTTGGACTCCATAGCCATAGCTTTCTATACAAGATGGCTATGGAGGAAAAG

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU171073 vs. TrEMBL
Match: A0A0A0LQQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042150 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.9e-40
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1   ITLLHVFPSTRSKGSSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRKITA 60
           ITLLHVFPSTRSK SSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRKITA
Sbjct: 34  ITLLHVFPSTRSKSSSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRKITA 93

Query: 61  IVREIGASVLVVGLHSHSFLYKMAMEEK 120
           IVREIGASVLVVGLHSHSFLYKMAMEE+
Sbjct: 94  IVREIGASVLVVGLHSHSFLYKMAMEEE 121

Query: 121  180
           
Sbjct: 154  121

Query: 181  240
           
Sbjct: 214  121

Query: 241  265
           
Sbjct: 274  121

[Close]

BLAST of CU171073 vs. TrEMBL
Match: W9S674_9ROSA (Putative AC transposase OS=Morus notabilis GN=L484_022285 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-27
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 1


Query: 1   ITLLHVFPST---RSKGSSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRK 60
           ITLLHVF S+   RSK   K R  RL G+QLAL+F+D+CNTF NTKVEIVV+EGDQEGRK
Sbjct: 34  ITLLHVFSSSSSSRSKSKKKNRLLRLKGFQLALSFQDICNTFSNTKVEIVVSEGDQEGRK 93

Query: 61  ITAIVREIGASVLVVGLHSHSFLYKMAM 120
           I+AIVREIGASVLVVGLH HSFLYK+AM
Sbjct: 94  ISAIVREIGASVLVVGLHDHSFLYKLAM 121

Query: 121  180
           
Sbjct: 154  121

Query: 181  240
           
Sbjct: 214  121

Query: 241  256
           
Sbjct: 274  121

[Close]

BLAST of CU171073 vs. TrEMBL
Match: M5WBX5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011515mg PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.1e-27
Identity = 58/85 (68.24%), Postives = 74/85 (87.06%), Query Frame = 1


Query: 1   ITLLHVFPSTRSKGSSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRKITA 60
           ITLLHVF ++RS+  +K R  RL G+QLAL+F+D+CNTFPNTKVE++VTEGDQ+G+KI A
Sbjct: 34  ITLLHVFSTSRSRNKNKTRLLRLKGFQLALSFKDICNTFPNTKVEMIVTEGDQDGKKIAA 93

Query: 61  IVREIGASVLVVGLHSHSFLYKMAM 120
           +V EIGAS LV+GLH HSFLY++AM
Sbjct: 94  VVTEIGASTLVLGLHDHSFLYRLAM 118

Query: 121  180
           
Sbjct: 154  118

Query: 181  240
           
Sbjct: 214  118

Query: 241  256
           
Sbjct: 274  118

[Close]

BLAST of CU171073 vs. TrEMBL
Match: A0A068C5G1_CATRO (Putative universal stress protein OS=Catharanthus roseus PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.9e-26
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 1


Query: 1   ITLLHVFPSTRSKGSSKVRNRRLNGYQLALTFRDLC-NTFPNTKVEIVVTEGDQEGRKIT 60
           ITLLHVFPSTRS+   K+R  RL G+QLAL+F+D+C N FPNTK EIVVTEGD+EG KI 
Sbjct: 34  ITLLHVFPSTRSRNKKKLRLLRLKGFQLALSFKDICCNNFPNTKTEIVVTEGDEEGGKIA 93

Query: 61  AIVREIGASVLVVGLHSHSFLYKMAM 120
            +VREIGAS LVVGLH  SFLYK+AM
Sbjct: 94  TMVREIGASTLVVGLHDQSFLYKLAM 119

Query: 121  180
           
Sbjct: 154  119

Query: 181  240
           
Sbjct: 214  119

Query: 241  256
           
Sbjct: 274  119

[Close]

BLAST of CU171073 vs. TrEMBL
Match: A0A0L9UB38_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g033800 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 1   ITLLHVFPSTRSKGSSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRKITA 60
           ITLLHV+ STRSK  SK R  RLNG++LAL+F+D+CN +PNTKVEI+VTEGD EG KI A
Sbjct: 34  ITLLHVYHSTRSKSRSKARVLRLNGFKLALSFQDMCNNYPNTKVEIIVTEGDLEGTKIAA 93

Query: 61  IVREIGASVLVVGLHSHSFLYKMAM 120
            VRE+GAS+LVVGLH  SFLYK+ M
Sbjct: 94  TVREVGASMLVVGLHDCSFLYKLTM 118

Query: 121  180
           
Sbjct: 154  118

Query: 181  240
           
Sbjct: 214  118

Query: 241  256
           
Sbjct: 274  118

[Close]

BLAST of CU171073 vs. NCBI nr
Match: gi|449439683|ref|XP_004137615.1| (PREDICTED: uncharacterized protein LOC101206357 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.2e-40
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1   ITLLHVFPSTRSKGSSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRKITA 60
           ITLLHVFPSTRSK SSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRKITA
Sbjct: 34  ITLLHVFPSTRSKSSSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRKITA 93

Query: 61  IVREIGASVLVVGLHSHSFLYKMAMEEK 120
           IVREIGASVLVVGLHSHSFLYKMAMEE+
Sbjct: 94  IVREIGASVLVVGLHSHSFLYKMAMEEE 121

Query: 121  180
           
Sbjct: 154  121

Query: 181  240
           
Sbjct: 214  121

Query: 241  265
           
Sbjct: 274  121

[Close]

BLAST of CU171073 vs. NCBI nr
Match: gi|659066685|ref|XP_008456196.1| (PREDICTED: uncharacterized protein LOC103496179 [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 5.9e-39
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1   ITLLHVFPSTRSKGSSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRKITA 60
           ITLLHVFPSTRSK SSKVRNRRLNGYQLALTFRDLCNTFPNTKVEI+VTEGDQEGRK  A
Sbjct: 34  ITLLHVFPSTRSKSSSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIIVTEGDQEGRKTAA 93

Query: 61  IVREIGASVLVVGLHSHSFLYKMAMEEK 120
           IVREIGASVLVVGLHSHSFLYKMAMEE+
Sbjct: 94  IVREIGASVLVVGLHSHSFLYKMAMEEE 121

Query: 121  180
           
Sbjct: 154  121

Query: 181  240
           
Sbjct: 214  121

Query: 241  265
           
Sbjct: 274  121

[Close]

BLAST of CU171073 vs. NCBI nr
Match: gi|1009131850|ref|XP_015883065.1| (PREDICTED: uncharacterized protein LOC107418888 [Ziziphus jujuba])

HSP 1 Score: 135.2 bits (339), Expect = 5.6e-29
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 1   ITLLHVFPSTRSKGSSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRKITA 60
           ITLLHVFP+TRSK   K R  RL G+QLAL+F+D+CN FPNTKVEI+VTEGD+EG+KI++
Sbjct: 34  ITLLHVFPTTRSKSKKKTRLLRLKGFQLALSFKDICNGFPNTKVEIIVTEGDEEGKKISS 93

Query: 61  IVREIGASVLVVGLHSHSFLYKMAM 120
           +VREIGAS LVVGLH HSFLYK+AM
Sbjct: 94  MVREIGASALVVGLHDHSFLYKLAM 118

Query: 121  180
           
Sbjct: 154  118

Query: 181  240
           
Sbjct: 214  118

Query: 241  256
           
Sbjct: 274  118

[Close]

BLAST of CU171073 vs. NCBI nr
Match: gi|470130380|ref|XP_004301081.1| (PREDICTED: uncharacterized protein LOC101313612 [Fragaria vesca subsp. vesca])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 61/87 (70.11%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 1   ITLLHVFPSTRSKGSSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRKITA 60
           ITLLHVFPS+RSK  +K R  RL G++LAL+F+D+C++FPNTKVE+VVTEGD EG+KI A
Sbjct: 34  ITLLHVFPSSRSKNKNKTRLLRLKGFRLALSFKDICDSFPNTKVEMVVTEGDDEGKKIAA 93

Query: 61  IVREIGASVLVVGLHSHSFLYKMAMEE 120
           +VREIGAS LV+GLH HSFLYK+AM +
Sbjct: 94  MVREIGASELVLGLHDHSFLYKLAMAQ 120

Query: 121  180
           
Sbjct: 154  120

Query: 181  240
           
Sbjct: 214  120

Query: 241  262
           
Sbjct: 274  120

[Close]

BLAST of CU171073 vs. NCBI nr
Match: gi|460379971|ref|XP_004235732.1| (PREDICTED: uncharacterized protein LOC101257549 [Solanum lycopersicum])

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 60/86 (69.77%), Postives = 75/86 (87.21%), Query Frame = 1


Query: 1   ITLLHVFPSTRSKGSSKVRNRRLNGYQLALTFRDLCNTFPNTKVEIVVTEGDQEGRKITA 60
           +TLLHVFP+ RS+ ++K+R  RL G+QLAL+F+DLCN FPNTK EIVVTEGDQ+GRKI  
Sbjct: 34  LTLLHVFPNLRSRSNNKLRLLRLKGFQLALSFQDLCNDFPNTKTEIVVTEGDQDGRKIAE 93

Query: 61  IVREIGASVLVVGLHSHSFLYKMAME 120
           +VR+IGAS LVVGLH HSF+Y+MAM+
Sbjct: 94  MVRQIGASTLVVGLHDHSFIYRMAMD 119

Query: 121  180
           
Sbjct: 154  119

Query: 181  240
           
Sbjct: 214  119

Query: 241  259
           
Sbjct: 274  119

The following BLAST results are available for this feature:

BLAST of CU171073 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQQ9_CUCSA	4.9e-40	97.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042150 PE=4 SV=1	[more]
W9S674_9ROSA	3.6e-27	76.14	Putative AC transposase OS=Morus notabilis GN=L484_022285 PE=4 SV=1	[more]
M5WBX5_PRUPE	8.1e-27	68.24	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011515mg PE=4 SV=1	[more]
A0A068C5G1_CATRO	6.9e-26	72.09	Putative universal stress protein OS=Catharanthus roseus PE=2 SV=1	[more]
A0A0L9UB38_PHAAN	1.2e-25	70.59	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g033800 PE=4 SV=1	[more]

BLAST of CU171073 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439683\|ref\|XP_004137615.1\|	3.2e-40	97.73	PREDICTED: uncharacterized protein LOC101206357 [Cucumis sativus]	[more]
gi\|659066685\|ref\|XP_008456196.1\|	5.9e-39	94.32	PREDICTED: uncharacterized protein LOC103496179 [Cucumis melo]	[more]
gi\|1009131850\|ref\|XP_015883065.1\|	5.6e-29	74.12	PREDICTED: uncharacterized protein LOC107418888 [Ziziphus jujuba]	[more]
gi\|470130380\|ref\|XP_004301081.1\|	1.1e-27	70.11	PREDICTED: uncharacterized protein LOC101313612 [Fragaria vesca subsp. vesca]	[more]
gi\|460379971\|ref\|XP_004235732.1\|	1.4e-27	69.77	PREDICTED: uncharacterized protein LOC101257549 [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR014729	Rossmann-like_a/b/a_fold

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G042150	Csa1G042150	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0143240	H0143240	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	G3DSA:3.40.50.620		coord: 1..85 score: 2.
None	No IPR available	PANTHER	PTHR31964	FAMILY NOT NAMED	coord: 1..87 score: 6.5
None	No IPR available	PANTHER	PTHR31964:SF13	ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE PROTEIN	coord: 1..87 score: 6.5
None	No IPR available	unknown	SSF52402	Adenine nucleotide alpha hydrolases-like	coord: 2..84 score: 1.6