CU169915 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU169915
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 7584118 .. 7584308 (+)
Sequence length213
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ACTTAGACTAGACCGTAATAAGTTGATGGTGGACGTCGTGATATGCAGTATTGTTGCGAAATAAGATGTGGAAGAGATTACCAGGCAGCCATAATCCACAGTGATCGTCTACCGTCTTAATAGTGGCAAAAGGAAAAGAAGAAGATGGAGATTCTAGGAGTCATACCAGATGCTAAAAATGACCAACGCCCCACCAAATCGTGTCAAGCAGTA
Homology
[Close]
BLAST of CU169915 vs. Swiss-Prot
Match: SBH1_ARATH (Sphinganine C4-monooxygenase 1 OS=Arabidopsis thaliana GN=SBH1 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-14
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = -3 

Query: 20  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 79
           ATIKTVDDHCGLWLPGNLFH++F+NN+AYHD+HHQL
Sbjct: 179 ATIKTVDDHCGLWLPGNLFHMVFKNNSAYHDIHHQL 214

Query: 80   128
           
Sbjct: 239  214


HSP 2 Score: 35.4 bits (80), Expect = 3.0e-01
Identity = 16/21 (76.19%), Postives = 15/21 (71.43%), Query Frame = -2 

Query: 129 GRWSFLASGMTPRISIFFFSF 188
           G  SFL SGM+PR SIFFFSF
Sbjct: 158 GALSFLVSGMSPRTSIFFFSF 178

Query: 189  192
           
Sbjct: 218  178

[Close]
BLAST of CU169915 vs. Swiss-Prot
Match: SBH2_ARATH (Sphinganine C4-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-13
Identity = 32/36 (88.89%), Postives = 31/36 (86.11%), Query Frame = -3 

Query: 20  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 79
           ATIKTVDDHCGLWLPGN FHI F NN+AYHDVHHQL
Sbjct: 178 ATIKTVDDHCGLWLPGNPFHIFFSNNSAYHDVHHQL 213

Query: 80   128
           
Sbjct: 238  213


HSP 2 Score: 33.5 bits (75), Expect = 1.1e+00
Identity = 15/21 (71.43%), Postives = 15/21 (71.43%), Query Frame = -2 

Query: 129 GRWSFLASGMTPRISIFFFSF 188
           G  SFL SGM+PR +IFFFSF
Sbjct: 157 GALSFLFSGMSPRTAIFFFSF 177

Query: 189  192
           
Sbjct: 217  177

[Close]
BLAST of CU169915 vs. Swiss-Prot
Match: SUR2_YEAST (Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUR2 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.1e-07
Identity = 23/35 (65.71%), Postives = 24/35 (68.57%), Query Frame = -3 

Query: 23  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQ 82
           AT+KTVDDHCG  LP + F  LF NN  YHD+HHQ
Sbjct: 241 ATMKTVDDHCGYALPLDPFQWLFPNNAVYHDIHHQ 275

Query: 83   128
           
Sbjct: 301  275

[Close]
BLAST of CU169915 vs. TrEMBL
Match: A0A0A0LJX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101090 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.8e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3 

Query: 20  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 79
           ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL
Sbjct: 145 ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 180

Query: 80   128
           
Sbjct: 205  180

[Close]
BLAST of CU169915 vs. TrEMBL
Match: A0A0A0LJX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101090 PE=3 SV=1)

HSP 1 Score: 40.4 bits (93), Expect = 1.0e+00
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = -2 

Query: 129 GRWSFLASGMTPRISIFFFSF 188
           G  SFLASGMTPRISIFFFSF
Sbjct: 124 GALSFLASGMTPRISIFFFSF 144

Query: 189  192
           
Sbjct: 184  144


HSP 2 Score: 81.6 bits (200), Expect = 4.1e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -3 

Query: 20  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 79
           ATIKTVDDHCGLWLPGNLFH+ F+NNTAYHDVHHQL
Sbjct: 177 ATIKTVDDHCGLWLPGNLFHVFFKNNTAYHDVHHQL 212

Query: 80   128
           
Sbjct: 237  212

[Close]
BLAST of CU169915 vs. TrEMBL
Match: A0A059D8M5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03436 PE=3 SV=1)

HSP 1 Score: 35.0 bits (79), Expect = 4.4e+01
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = -2 

Query: 129 GRWSFLASGMTPRISIFFFSF 188
           G  SFL SGM+PR SIFFFSF
Sbjct: 156 GALSFLLSGMSPRASIFFFSF 176

Query: 189  192
           
Sbjct: 216  176


HSP 2 Score: 81.6 bits (200), Expect = 4.1e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -3 

Query: 20  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 79
           ATIKTVDDHCGLWLPGNLFH+ F+NNTAYHDVHHQL
Sbjct: 82  ATIKTVDDHCGLWLPGNLFHVFFKNNTAYHDVHHQL 117

Query: 80   128
           
Sbjct: 142  117

[Close]
BLAST of CU169915 vs. TrEMBL
Match: A0A0M4C3W6_JATCU (Sterol desaturase (Fragment) OS=Jatropha curcas PE=2 SV=1)

HSP 1 Score: 34.7 bits (78), Expect = 5.7e+01
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = -2 

Query: 129 GRWSFLASGMTPRISIFFFSF 188
           G  SFL SGM+PR SIFFFSF
Sbjct: 61  GALSFLMSGMSPRSSIFFFSF 81

Query: 189  192
           
Sbjct: 121  81


HSP 2 Score: 81.6 bits (200), Expect = 4.1e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -3 

Query: 20  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 79
           ATIKTVDDHCGLWLPGNLFH+ F+NNTAYHDVHHQL
Sbjct: 177 ATIKTVDDHCGLWLPGNLFHVFFKNNTAYHDVHHQL 212

Query: 80   128
           
Sbjct: 237  212

[Close]
BLAST of CU169915 vs. TrEMBL
Match: A0A067LAS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15596 PE=3 SV=1)

HSP 1 Score: 34.7 bits (78), Expect = 5.7e+01
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = -2 

Query: 129 GRWSFLASGMTPRISIFFFSF 188
           G  SFL SGM+PR SIFFFSF
Sbjct: 156 GALSFLMSGMSPRSSIFFFSF 176

Query: 189  192
           
Sbjct: 216  176


HSP 2 Score: 81.6 bits (200), Expect = 4.1e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -3 

Query: 20  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 79
           ATIKTVDDHCGLWLPGNLFH+ F+NNTAYHDVHHQL
Sbjct: 177 ATIKTVDDHCGLWLPGNLFHVFFKNNTAYHDVHHQL 212

Query: 80   128
           
Sbjct: 237  212

[Close]
BLAST of CU169915 vs. NCBI nr
Match: gi|449442297|ref|XP_004138918.1| (PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3 

Query: 20  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 79
           ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL
Sbjct: 176 ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 211

Query: 80   128
           
Sbjct: 236  211

[Close]
BLAST of CU169915 vs. NCBI nr
Match: gi|700206260|gb|KGN61379.1| (hypothetical protein Csa_2G101090 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3 

Query: 20  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 79
           ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL
Sbjct: 145 ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 180

Query: 80   128
           
Sbjct: 205  180

[Close]
BLAST of CU169915 vs. NCBI nr
Match: gi|659082180|ref|XP_008441706.1| (PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-14
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -3 

Query: 20  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 79
           ATIKTVDDHCGLWLPGNLFH+LFRNNTAYHDVHHQL
Sbjct: 176 ATIKTVDDHCGLWLPGNLFHVLFRNNTAYHDVHHQL 211

Query: 80   128
           
Sbjct: 236  211

[Close]
BLAST of CU169915 vs. NCBI nr
Match: gi|470122555|ref|XP_004297306.1| (PREDICTED: sphinganine C(4)-monooxygenase 1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-14
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -3 

Query: 20  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 79
           ATIKTVDDHCGLWLPGNLFH+LFRNNTAYHDVHHQL
Sbjct: 176 ATIKTVDDHCGLWLPGNLFHVLFRNNTAYHDVHHQL 211

Query: 80   128
           
Sbjct: 236  211

[Close]
BLAST of CU169915 vs. NCBI nr
Match: gi|694361203|ref|XP_009360346.1| (PREDICTED: sphinganine C(4)-monooxygenase 1-like [Pyrus x bretschneideri])

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-14
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -3 

Query: 20  ATIKTVDDHCGLWLPGNLFHILFRNNTAYHDVHHQL 79
           ATIKTVDDHCGLWLPGNLFH LFRNNTAYHDVHHQL
Sbjct: 176 ATIKTVDDHCGLWLPGNLFHALFRNNTAYHDVHHQL 211

Query: 80   128
           
Sbjct: 236  211

The following BLAST results are available for this feature:
BLAST of CU169915 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SBH1_ARATH1.8e-1486.11Sphinganine C4-monooxygenase 1 OS=Arabidopsis thaliana GN=SBH1 PE=1 SV=1[more]
SBH2_ARATH1.2e-1388.89Sphinganine C4-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1[more]
SUR2_YEAST8.1e-0765.71Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae (strain ATCC 204508... [more]
BLAST of CU169915 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJX9_CUCSA4.8e-14100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101090 PE=3 SV=1[more]
A0A0A0LJX9_CUCSA1.0e+0090.48Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101090 PE=3 SV=1[more]
A0A059D8M5_EUCGR4.4e+0176.19Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03436 PE=3 SV=1[more]
A0A0M4C3W6_JATCU5.7e+0176.19Sterol desaturase (Fragment) OS=Jatropha curcas PE=2 SV=1[more]
A0A067LAS4_JATCU5.7e+0176.19Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15596 PE=3 SV=1[more]
BLAST of CU169915 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442297|ref|XP_004138918.1|1.8e-14100.00PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis sativus][more]
gi|700206260|gb|KGN61379.1|1.8e-14100.00hypothetical protein Csa_2G101090 [Cucumis sativus][more]
gi|659082180|ref|XP_008441706.1|2.4e-1497.22PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cucumis melo][more]
gi|470122555|ref|XP_004297306.1|2.4e-1497.22PREDICTED: sphinganine C(4)-monooxygenase 1 [Fragaria vesca subsp. vesca][more]
gi|694361203|ref|XP_009360346.1|6.9e-1497.22PREDICTED: sphinganine C(4)-monooxygenase 1-like [Pyrus x bretschneideri][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa2G101090Csa2G101090gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0133697H0133697EST