CU161368 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU161368
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 27112473 .. 27112713 (+)
Sequence length245
The following sequences are available for this feature:

transcribed_cluster sequence

TCACTACTATAACTCTACACAGCACTCTTGAAACTAATTTAATCCATGTATGACAATCATCACAGATCCGCAGGTTCTTTGAAATACTTGATCTTTTGCCCCCAGGTACTAGTTTTCAAGATCGCATAAGCCAATGCCATCTTTTCACTATGAAAATGATAAGTTCTCTTCCTTCTCCTCCTCAGAGATATCCATGAAAACCAACTCCGTCACAGGCATATATCCCTCCGTCCGAGTTCTCTTCA
BLAST of CU161368 vs. TrEMBL
Match: A0A0A0LXZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G666990 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-08
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = -2

Query: 2   KLVPGGKRSSISKNLRICDDCHTWIKLVSRVLCRVIVV 61
           K  PG K  SISKNLRICDDCHTWIKLVSRVLCRVIVV
Sbjct: 482 KTSPGAK-ISISKNLRICDDCHTWIKLVSRVLCRVIVV 518

Query: 62  116
           
Sbjct: 542 518

BLAST of CU161368 vs. TrEMBL
Match: A0A0A0LXZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G666990 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -3

Query: 154 KRTRTEGYMPVTELVFMDISEEEKEENLSF 213
           KRTRTEGYMPVTELVFMDISEEEKEENLSF
Sbjct: 440 KRTRTEGYMPVTELVFMDISEEEKEENLSF 469

Query: 214 244
           
Sbjct: 500 469


HSP 2 Score: 36.2 bits (82), Expect = 2.3e+01
Identity = 20/32 (62.50%), Postives = 22/32 (68.75%), Query Frame = -1

Query: 78  RKRTYHFHSEKMALAYAILKTSTWGQKIKYFK 137
           ++    FHSEKMALAYAILKTS  G KI   K
Sbjct: 463 KEENLSFHSEKMALAYAILKTSP-GAKISISK 493

Query: 138 174
           
Sbjct: 523 493

BLAST of CU161368 vs. NCBI nr
Match: gi|778664265|ref|XP_011660258.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-08
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = -2

Query: 2   KLVPGGKRSSISKNLRICDDCHTWIKLVSRVLCRVIVV 61
           K  PG K  SISKNLRICDDCHTWIKLVSRVLCRVIVV
Sbjct: 482 KTSPGAK-ISISKNLRICDDCHTWIKLVSRVLCRVIVV 518

Query: 62  116
           
Sbjct: 542 518

BLAST of CU161368 vs. NCBI nr
Match: gi|659086109|ref|XP_008443769.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g50990 isoform X1 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-08
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = -2

Query: 2   KLVPGGKRSSISKNLRICDDCHTWIKLVSRVLCRVIVV 61
           K  PG K  SISKNLRICDDCHTWIKLVSRVLCRVIVV
Sbjct: 482 KTSPGAK-ISISKNLRICDDCHTWIKLVSRVLCRVIVV 518

Query: 62  116
           
Sbjct: 542 518

BLAST of CU161368 vs. NCBI nr
Match: gi|659086117|ref|XP_008443773.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g50990 isoform X2 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-08
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = -2

Query: 2   KLVPGGKRSSISKNLRICDDCHTWIKLVSRVLCRVIVV 61
           K  PG K  SISKNLRICDDCHTWIKLVSRVLCRVIVV
Sbjct: 380 KTSPGAK-ISISKNLRICDDCHTWIKLVSRVLCRVIVV 416

Query: 62  116
           
Sbjct: 440 416

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LXZ9_CUCSA2.0e-0886.84Uncharacterized protein OS=Cucumis sativus GN=Csa_1G666990 PE=4 SV=1[more]
A0A0A0LXZ9_CUCSA1.7e-07100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G666990 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778664265|ref|XP_011660258.1|2.9e-0886.84PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Cucumis sativu... [more]
gi|659086109|ref|XP_008443769.1|2.9e-0886.84PREDICTED: pentatricopeptide repeat-containing protein At5g50990 isoform X1 [Cuc... [more]
gi|659086117|ref|XP_008443773.1|2.9e-0886.84PREDICTED: pentatricopeptide repeat-containing protein At5g50990 isoform X2 [Cuc... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G666990Csa1G666990gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0050022H0050022EST