CU157746 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU157746
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	CDT1-like protein a, chloroplastic
Location	Chr1 : 4800240 .. 4800712 (-)
Sequence length	206

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CAATTGTAGAGTTCTTTACTTGCTTTACTTCCTCGTTGAGGCTGCTTAAAATGAGAAAAAGGATGTCTACCTTTCACAATGTGTCCGGCCAGGTGTCGATTATGACAAAAAGAATGTTTTTGGACAAACATCTAGCACAGATATTATATATCATTCCCGAAGCAGTGAATATTGATAAAGTGATGATTCACGACAAGAAGACATTG

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU157746 vs. Swiss-Prot
Match: CDT1A_ARATH (CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-09
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 3


Query: 9   EFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKVMI 68
           +FF    +S+ L K+R    TF N+S Q+  +T+R F   HLAQI +I+PEA+ I +V+I
Sbjct: 120 KFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILPEAIEIKRVLI 179

Query: 69  HDKKT 128
           HD+ T
Sbjct: 180 HDETT 184

Query: 129  188
           
Sbjct: 240  184

Query: 189  204
           
Sbjct: 300  184

[Close]

BLAST of CU157746 vs. TrEMBL
Match: A0A0A0LQM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043230 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 3


Query: 3   IVEFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKV 62
           IVEFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKV
Sbjct: 64  IVEFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKV 123

Query: 63  MIHDKKTL 122
           MIHDKKTL
Sbjct: 124 MIHDKKTL 131

Query: 123  182
           
Sbjct: 184  131

Query: 183  207
           
Sbjct: 244  131

[Close]

BLAST of CU157746 vs. TrEMBL
Match: A0A0V0IHS0_SOLCH (Putative CDT1-like protein a, chloroplastic-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-13
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 3


Query: 9   EFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKVMI 68
           EFF     SLRLL +RKR  TF NVS QV ++T R F  KHLAQI YI+PEA+ IDK+++
Sbjct: 75  EFFDRILCSLRLLNLRKRSPTFQNVSSQVEVLTGRKFTHKHLAQIKYIVPEAIQIDKLLV 134

Query: 69  HDKKTL 128
           HD +T+
Sbjct: 135 HDARTM 140

Query: 129  188
           
Sbjct: 195  140

Query: 189  207
           
Sbjct: 255  140

[Close]

BLAST of CU157746 vs. TrEMBL
Match: M1B861_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015216 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.7e-13
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 3


Query: 9   EFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKVMI 68
           EFF     SLRLL +RKR  TF NVS QV ++T R F  KHLAQI YI+PEA+ IDK+++
Sbjct: 75  EFFDRILCSLRLLNLRKRSPTFQNVSSQVEVLTGRKFTHKHLAQIKYIVPEAIQIDKLLV 134

Query: 69  HDKKTL 128
           HD  T+
Sbjct: 135 HDATTM 140

Query: 129  188
           
Sbjct: 195  140

Query: 189  207
           
Sbjct: 255  140

[Close]

BLAST of CU157746 vs. TrEMBL
Match: K4BEW8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.7e-13
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 3


Query: 9   EFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKVMI 68
           E F     SLRLL +RKR  TF NVS QV ++T R F  KHLAQI YI+PEA+ IDK+++
Sbjct: 75  ELFDRILCSLRLLNLRKRAPTFQNVSSQVEVLTGRKFTHKHLAQIKYIVPEAIQIDKLLV 134

Query: 69  HDKKTL 128
           HD KT+
Sbjct: 135 HDAKTM 140

Query: 129  188
           
Sbjct: 195  140

Query: 189  207
           
Sbjct: 255  140

[Close]

BLAST of CU157746 vs. TrEMBL
Match: A0A166BN76_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011408 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.7e-13
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 3


Query: 3   IVEFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKV 62
           + E F   TSSLRLL +RK+  TF NVS QV I+ +R F  KHLAQI+YI+PEAV  D++
Sbjct: 62  MAEVFNRMTSSLRLLSLRKKSPTFKNVSSQVQILARREFSYKHLAQIMYILPEAVKTDRI 121

Query: 63  MIHDKKTL 122
           +IH++KT+
Sbjct: 122 LIHNEKTM 129

Query: 123  182
           
Sbjct: 182  129

Query: 183  207
           
Sbjct: 242  129

[Close]

BLAST of CU157746 vs. NCBI nr
Match: gi|778657537|ref|XP_011651063.1| (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 3


Query: 3   IVEFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKV 62
           IVEFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKV
Sbjct: 64  IVEFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKV 123

Query: 63  MIHDKKTL 122
           MIHDKKTL
Sbjct: 124 MIHDKKTL 131

Query: 123  182
           
Sbjct: 184  131

Query: 183  207
           
Sbjct: 244  131

[Close]

BLAST of CU157746 vs. NCBI nr
Match: gi|659066989|ref|XP_008437096.1| (PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 3


Query: 3   IVEFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKV 62
           IVEFFTC TSS+RLLKMRK+MSTFHNVS QVS+MTKRMFLDKHLAQI+YIIPEAVNIDKV
Sbjct: 69  IVEFFTCLTSSMRLLKMRKKMSTFHNVSRQVSVMTKRMFLDKHLAQIVYIIPEAVNIDKV 128

Query: 63  MIHDKKT 122
           MIHDKKT
Sbjct: 129 MIHDKKT 135

Query: 123  182
           
Sbjct: 189  135

Query: 183  204
           
Sbjct: 249  135

[Close]

BLAST of CU157746 vs. NCBI nr
Match: gi|659066993|ref|XP_008437112.1| (PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 8.1e-20
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 3


Query: 36  LRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKVMIHDKKT 95
           +RLLKMRK+MSTFHNVS QVS+MTKRMFLDKHLAQI+YIIPEAVNIDKVMIHDKKT
Sbjct: 1   MRLLKMRKKMSTFHNVSRQVSVMTKRMFLDKHLAQIVYIIPEAVNIDKVMIHDKKT 56

Query: 96   155
           
Sbjct: 61   56

Query: 156  204
           
Sbjct: 121  56

[Close]

BLAST of CU157746 vs. NCBI nr
Match: gi|719963177|ref|XP_010248885.1| (PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Nelumbo nucifera])

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-13
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 3


Query: 3   IVEFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKV 62
           ++ FF C  SSLRLL +RK++ TF  +S QV ++TKR F   HLAQI YI+PEAV ++K+
Sbjct: 82  MIGFFDCMNSSLRLLHLRKKLPTFQKISSQVEVLTKRKFSYNHLAQIKYILPEAVQVEKI 141

Query: 63  MIHDKKT 122
           ++HD+KT
Sbjct: 142 LVHDEKT 148

Query: 123  182
           
Sbjct: 202  148

Query: 183  204
           
Sbjct: 262  148

[Close]

BLAST of CU157746 vs. NCBI nr
Match: gi|719963181|ref|XP_010248901.1| (PREDICTED: CDT1-like protein a, chloroplastic isoform X3 [Nelumbo nucifera])

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-13
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 3


Query: 3   IVEFFTCFTSSLRLLKMRKRMSTFHNVSGQVSIMTKRMFLDKHLAQILYIIPEAVNIDKV 62
           ++ FF C  SSLRLL +RK++ TF  +S QV ++TKR F   HLAQI YI+PEAV ++K+
Sbjct: 82  MIGFFDCMNSSLRLLHLRKKLPTFQKISSQVEVLTKRKFSYNHLAQIKYILPEAVQVEKI 141

Query: 63  MIHDKKT 122
           ++HD+KT
Sbjct: 142 LVHDEKT 148

Query: 123  182
           
Sbjct: 202  148

Query: 183  204
           
Sbjct: 262  148

The following BLAST results are available for this feature:

BLAST of CU157746 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CDT1A_ARATH	2.9e-09	44.62	CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1	[more]

BLAST of CU157746 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQM9_CUCSA	1.3e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043230 PE=4 SV=1	[more]
A0A0V0IHS0_SOLCH	3.0e-13	57.58	Putative CDT1-like protein a, chloroplastic-like OS=Solanum chacoense PE=4 SV=1	[more]
M1B861_SOLTU	6.7e-13	57.58	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015216 PE=4 SV=1	[more]
K4BEW8_SOLLC	6.7e-13	57.58	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A166BN76_DAUCA	6.7e-13	55.88	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011408 PE=4 SV=1	[more]

BLAST of CU157746 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778657537\|ref\|XP_011651063.1\|	1.3e-28	100.00	PREDICTED: CDT1-like protein a, chloroplastic [Cucumis sativus]	[more]
gi\|659066989\|ref\|XP_008437096.1\|	1.3e-25	91.04	PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|659066993\|ref\|XP_008437112.1\|	8.1e-20	91.07	PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|719963177\|ref\|XP_010248885.1\|	4.3e-13	53.73	PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Nelumbo nucifera]	[more]
gi\|719963181\|ref\|XP_010248901.1\|	4.3e-13	53.73	PREDICTED: CDT1-like protein a, chloroplastic isoform X3 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR014939	CDT1_Gemini-bd-like

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G043230	Csa1G043230	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0008648	H0008648	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 2..66 score: 7.62
IPR014939	CDT1 Geminin-binding domain-like	PFAM	PF08839	CDT1	coord: 3..59 score: 9.1
None	No IPR available	PANTHER	PTHR28637	FAMILY NOT NAMED	coord: 2..69 score: 1.3
None	No IPR available	PANTHER	PTHR28637:SF2	SUBFAMILY NOT NAMED	coord: 2..69 score: 1.3