CU157180 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU157180
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10646038 .. 10646241 (-)
Sequence length204
The following sequences are available for this feature:

transcribed_cluster sequence

CACAAATTCTAATGTTCTTCTTAATCCTAATGGTTAATCCAGGAGGAGTTTTCAAGACTGCAAAATAGCTAATGCTAACTTCTCACTATGGTACTGTAGCTTTAATTCTCTGTCCTGCTGTTCATGAAGAAAAGCACATGGCTTGTGTCTGGCACATACCCAATCTCTTTAATTTTCCCACTTATTTTCTCCCACATCCTCTGT
BLAST of CU157180 vs. TrEMBL
Match: A0A0A0LSV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G171070 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = -2

Query: 114 QRMWEKISGKIKEIGYVPDTSHVLFFMNSR 173
           QRMWEKISGKIKEIGYVPDTSHVLFFMN +
Sbjct: 572 QRMWEKISGKIKEIGYVPDTSHVLFFMNQQ 601

Query: 174 204
           
Sbjct: 632 601

BLAST of CU157180 vs. TrEMBL
Match: A0A0A0LSV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G171070 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-02
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = -3

Query: 2   FAVLKTPPGLTIRIKKNIRIC 61
           FAVLKTPPGLTIRIKKNIRIC
Sbjct: 618 FAVLKTPPGLTIRIKKNIRIC 638

Query: 62  65
           
Sbjct: 678 638


HSP 2 Score: 40.4 bits (93), Expect = 1.0e+00
Identity = 19/22 (86.36%), Postives = 19/22 (86.36%), Query Frame = -1

Query: 67  FLHEQQDRELKLQYHSEKLALA 126
           F   QQDRELKLQYHSEKLALA
Sbjct: 596 FFMNQQDRELKLQYHSEKLALA 617

Query: 127 133
           
Sbjct: 656 617

BLAST of CU157180 vs. NCBI nr
Match: gi|449443492|ref|XP_004139511.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-08
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = -2

Query: 114 QRMWEKISGKIKEIGYVPDTSHVLFFMNSR 173
           QRMWEKISGKIKEIGYVPDTSHVLFFMN +
Sbjct: 572 QRMWEKISGKIKEIGYVPDTSHVLFFMNQQ 601

Query: 174 204
           
Sbjct: 632 601

BLAST of CU157180 vs. NCBI nr
Match: gi|659128610|ref|XP_008464285.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = -2

Query: 114 QRMWEKISGKIKEIGYVPDTSHVLFFMNSR 173
           QRMWEKISGKIKEIGYVPDTSHVLFFM+ +
Sbjct: 538 QRMWEKISGKIKEIGYVPDTSHVLFFMDQQ 567

Query: 174 204
           
Sbjct: 598 567

BLAST of CU157180 vs. NCBI nr
Match: gi|659128608|ref|XP_008464284.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = -2

Query: 114 QRMWEKISGKIKEIGYVPDTSHVLFFMNSR 173
           QRMWEKISGKIKEIGYVPDTSHVLFFM+ +
Sbjct: 574 QRMWEKISGKIKEIGYVPDTSHVLFFMDQQ 603

Query: 174 204
           
Sbjct: 634 603

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LSV8_CUCSA1.4e-0793.33Uncharacterized protein OS=Cucumis sativus GN=Csa_1G171070 PE=4 SV=1[more]
A0A0A0LSV8_CUCSA1.8e-02100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G171070 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449443492|ref|XP_004139511.1|5.4e-0893.33PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-... [more]
gi|659128610|ref|XP_008464285.1|2.0e-0790.00PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial ... [more]
gi|659128608|ref|XP_008464284.1|2.0e-0790.00PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial ... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G171070Csa1G171070gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0006499H0006499EST