CU157137 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU157137
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 12254240 .. 12254471 (-)
Sequence length233
The following sequences are available for this feature:

transcribed_cluster sequence

GGTCCTGGTGAGGGGAAGCAAGGAAATTGGACCTGGAAAGAAATGGTGTAAACTTCACAGGCATAATGTCAGTAATTGGTAGTTTTAAAATAGACATTAGAATGCTTTGAATTTGCAGTTGGAAAAAGAAGTCAGCAAAGAATACTAAGAATTAGTCGCATTGCTTGAAAAACCACTTCAATTATTTCTGTCATTGATCTTTCTTCTCCCACTCCTTCCTGTAATCTTTCCTC
BLAST of CU157137 vs. TrEMBL
Match: A0A0A0KR26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292190 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.7e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -2

Query: 2  MSILKLPITDIMPVKFTPFLSRSNFLASPHQD 61
          MSILKLPITDIMPVKFTPFLSRSNFLASPHQD
Sbjct: 1  MSILKLPITDIMPVKFTPFLSRSNFLASPHQD 32

Query: 62 98
          
Sbjct: 61 32

BLAST of CU157137 vs. TrEMBL
Match: A0A0A0KSY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292180 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-07
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = -1

Query: 135 EERLQEGVGEERSMTEIIEVVFQAMRLILSILC 194
           +ERLQ+GVGEERSMTEIIEVVFQAMRLILSILC
Sbjct: 95  KERLQKGVGEERSMTEIIEVVFQAMRLILSILC 127

Query: 195 234
           
Sbjct: 155 127

BLAST of CU157137 vs. NCBI nr
Match: gi|778701968|ref|XP_011655117.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 9.6e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -2

Query: 2  MSILKLPITDIMPVKFTPFLSRSNFLASPHQD 61
          MSILKLPITDIMPVKFTPFLSRSNFLASPHQD
Sbjct: 1  MSILKLPITDIMPVKFTPFLSRSNFLASPHQD 32

Query: 62 98
          
Sbjct: 61 32

BLAST of CU157137 vs. NCBI nr
Match: gi|659113970|ref|XP_008456846.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g39680 isoform X1 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = -2

Query: 2  MSILKLPITDIMPVKFTPFLSRSNFLASPHQD 61
          MSILKLPI+DIMPVKFTPFLSRS+F ASPHQD
Sbjct: 1  MSILKLPISDIMPVKFTPFLSRSDFFASPHQD 32

Query: 62 98
          
Sbjct: 61 32

BLAST of CU157137 vs. NCBI nr
Match: gi|700195684|gb|KGN50861.1| (hypothetical protein Csa_5G292180 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-06
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = -1

Query: 135 EERLQEGVGEERSMTEIIEVVFQAMRLILSILC 194
           +ERLQ+GVGEERSMTEIIEVVFQAMRLILSILC
Sbjct: 95  KERLQKGVGEERSMTEIIEVVFQAMRLILSILC 127

Query: 195 234
           
Sbjct: 155 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KR26_CUCSA6.7e-09100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292190 PE=4 SV=1[more]
A0A0A0KSY6_CUCSA2.8e-0793.94Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292180 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778701968|ref|XP_011655117.1|9.6e-09100.00PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Cucumis sativu... [more]
gi|659113970|ref|XP_008456846.1|3.1e-0790.63PREDICTED: pentatricopeptide repeat-containing protein At5g39680 isoform X1 [Cuc... [more]
gi|700195684|gb|KGN50861.1|2.0e-0693.94hypothetical protein Csa_5G292180 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa5G292180Csa5G292180gene
Csa5G292190Csa5G292190gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0006352H0006352EST