Csa5G292180 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G292180
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 12253783 .. 12254340 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAATCCCATTCCCCCTTCTAAAACACTACTTCTCTCCTGCTTCGACGCCACCGTACCTACACTTTCAAGCGGCTATAAATCCCCAAGTCCGTATCCATATTCAACAAGTTTTTCAGATTTTATTGAAATTGGTGTTCTTTCATCGCTTAGATTGGTTGATTCGATATCTTTATTTTTGGAGGGTTGAGAAATCTGTCCCACTTTTGGCAATTTCCCCTGTTTGTGCCACTCCACCGTCTAATCCCGCAGAGCCTTACCTCCGCCGTTCGTTTCCTCCTCAACGCCGAATCAGGTAACATCATTCTGCGGTTGTCTTCACTTGAATGTGTTAACCTTTTCTGGTACTCCATGCTCAATTGATCTAGTCAACTACAGGTGTGAAGCTCTGAGTATTTTCTATACGTGTCAGCATGGCACATGCAAGAAGAAAACAAGAAAAGAGAAATATAGGAAGGAAAGATTACAGAAAGGAGTGGGAGAAGAAAGATCAATGACAGAAATAATTGAAGTGGTTTTTCAAGCAATGCGACTAATTCTTAGTATTCTTTGCTGA

mRNA sequence

ATGCCCAATCCCATTCCCCCTTCTAAAACACTACTTCTCTCCTGCTTCGACGCCACCGTACCTACACTTTCAAGCGGCTATAAATCCCCAAGTCCGGTTGAGAAATCTGTCCCACTTTTGGCAATTTCCCCTGTTTGTGCCACTCCACCGTCTAATCCCGCAGAGCCTTACCTCCGCCGTTCGTTTCCTCCTCAACGCCGAATCAGGTGTGAAGCTCTGAGTATTTTCTATACGTGTCAGCATGGCACATGCAAGAAGAAAACAAGAAAAGAGAAATATAGGAAGGAAAGATTACAGAAAGGAGTGGGAGAAGAAAGATCAATGACAGAAATAATTGAAGTGGTTTTTCAAGCAATGCGACTAATTCTTAGTATTCTTTGCTGA

Coding sequence (CDS)

ATGCCCAATCCCATTCCCCCTTCTAAAACACTACTTCTCTCCTGCTTCGACGCCACCGTACCTACACTTTCAAGCGGCTATAAATCCCCAAGTCCGGTTGAGAAATCTGTCCCACTTTTGGCAATTTCCCCTGTTTGTGCCACTCCACCGTCTAATCCCGCAGAGCCTTACCTCCGCCGTTCGTTTCCTCCTCAACGCCGAATCAGGTGTGAAGCTCTGAGTATTTTCTATACGTGTCAGCATGGCACATGCAAGAAGAAAACAAGAAAAGAGAAATATAGGAAGGAAAGATTACAGAAAGGAGTGGGAGAAGAAAGATCAATGACAGAAATAATTGAAGTGGTTTTTCAAGCAATGCGACTAATTCTTAGTATTCTTTGCTGA

Protein sequence

MPNPIPPSKTLLLSCFDATVPTLSSGYKSPSPVEKSVPLLAISPVCATPPSNPAEPYLRRSFPPQRRIRCEALSIFYTCQHGTCKKKTRKEKYRKERLQKGVGEERSMTEIIEVVFQAMRLILSILC*
Homology
[Close]
BLAST of Csa5G292180 vs. TrEMBL
Match: A0A0A0KSY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292180 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 8.9e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 

Query: 1   MPNPIPPSKTLLLSCFDATVPTLSSGYKSPSPVEKSVPLLAISPVCATPPSNPAEPYLRR 60
           MPNPIPPSKTLLLSCFDATVPTLSSGYKSPSPVEKSVPLLAISPVCATPPSNPAEPYLRR
Sbjct: 1   MPNPIPPSKTLLLSCFDATVPTLSSGYKSPSPVEKSVPLLAISPVCATPPSNPAEPYLRR 60

Query: 61  SFPPQRRIRCEALSIFYTCQHGTCKKKTRKEKYRKERLQKGVGEERSMTEIIEVVFQAMR 120
           SFPPQRRIRCEALSIFYTCQHGTCKKKTRKEKYRKERLQKGVGEERSMTEIIEVVFQAMR
Sbjct: 61  SFPPQRRIRCEALSIFYTCQHGTCKKKTRKEKYRKERLQKGVGEERSMTEIIEVVFQAMR 120

Query: 121 LILSILC 128
           LILSILC
Sbjct: 121 LILSILC 127

[Close]
BLAST of Csa5G292180 vs. NCBI nr
Match: gi|700195684|gb|KGN50861.1| (hypothetical protein Csa_5G292180 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 

Query: 1   MPNPIPPSKTLLLSCFDATVPTLSSGYKSPSPVEKSVPLLAISPVCATPPSNPAEPYLRR 60
           MPNPIPPSKTLLLSCFDATVPTLSSGYKSPSPVEKSVPLLAISPVCATPPSNPAEPYLRR
Sbjct: 1   MPNPIPPSKTLLLSCFDATVPTLSSGYKSPSPVEKSVPLLAISPVCATPPSNPAEPYLRR 60

Query: 61  SFPPQRRIRCEALSIFYTCQHGTCKKKTRKEKYRKERLQKGVGEERSMTEIIEVVFQAMR 120
           SFPPQRRIRCEALSIFYTCQHGTCKKKTRKEKYRKERLQKGVGEERSMTEIIEVVFQAMR
Sbjct: 61  SFPPQRRIRCEALSIFYTCQHGTCKKKTRKEKYRKERLQKGVGEERSMTEIIEVVFQAMR 120

Query: 121 LILSILC 128
           LILSILC
Sbjct: 121 LILSILC 127

The following BLAST results are available for this feature:
BLAST of Csa5G292180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSY6_CUCSA8.9e-67100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292180 PE=4 SV=1[more]
BLAST of Csa5G292180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195684|gb|KGN50861.1|1.3e-66100.00hypothetical protein Csa_5G292180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU157137cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G292180.1Csa5G292180.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU157137CU157137transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G292180Wax gourdcuwgoB505
Csa5G292180Cucumber (Gy14) v1cgycuB522
Csa5G292180Cucurbita moschata (Rifu)cmocuB756
Csa5G292180Melon (DHL92) v3.5.1cumeB373
Csa5G292180Watermelon (Charleston Gray)cuwcgB359
Csa5G292180Watermelon (97103) v1cuwmB434
Csa5G292180Cucumber (Gy14) v2cgybcuB232
Csa5G292180Melon (DHL92) v3.6.1cumedB351
Csa5G292180Watermelon (97103) v2cuwmbB363