CU156422 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU156422
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRing finger protein
LocationChr4 : 23114352 .. 23114466 (+)
Sequence length116
The following sequences are available for this feature:

transcribed_cluster sequence

GGGTTTTCACATGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGTCGTCAGATTCTGGTGGTAAGTCAGTGCAGAGTGCGGTCGGTTTCCGGCGAGCTCG
BLAST of CU156422 vs. Swiss-Prot
Match: ATL8_ARATH (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 6.2e-09
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 2

Query: 2   GFHMSCIDTWFRSHSSCPSCRQILVVSQC 61
           GFH+SCIDTW  SHSSCPSCRQILVV++C
Sbjct: 126 GFHVSCIDTWLGSHSSCPSCRQILVVTRC 154

Query: 62  89
           
Sbjct: 186 154

BLAST of CU156422 vs. Swiss-Prot
Match: ATL80_ARATH (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-08
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 2

Query: 2   GFHMSCIDTWFRSHSSCPSCRQILVVSQC 61
           GFH++CIDTW  SHSSCPSCRQILVV++C
Sbjct: 133 GFHVACIDTWLGSHSSCPSCRQILVVARC 161

Query: 62  89
           
Sbjct: 193 161

BLAST of CU156422 vs. TrEMBL
Match: A0A0A0L5Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664340 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.7e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2

Query: 2   GFHMSCIDTWFRSHSSCPSCRQILVVSQCR 61
           GFHMSCIDTWFRSHSSCPSCRQILVVSQC+
Sbjct: 124 GFHMSCIDTWFRSHSSCPSCRQILVVSQCQ 153

Query: 62  92
           
Sbjct: 184 153

BLAST of CU156422 vs. TrEMBL
Match: I1K799_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G015200 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-07
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 2

Query: 2   GFHMSCIDTWFRSHSSCPSCRQILVVSQC 61
           GFH+SCID W RSHSSCPSCRQILVVS+C
Sbjct: 119 GFHVSCIDAWLRSHSSCPSCRQILVVSRC 147

Query: 62  89
           
Sbjct: 179 147

BLAST of CU156422 vs. TrEMBL
Match: A0A022Q8P8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014346mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-07
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 2

Query: 2   GFHMSCIDTWFRSHSSCPSCRQILVVSQCR 61
           GFH+SCIDTW RSHSSCPSCR+ILVV++C+
Sbjct: 131 GFHVSCIDTWLRSHSSCPSCRKILVVARCK 160

Query: 62  92
           
Sbjct: 191 160

BLAST of CU156422 vs. TrEMBL
Match: C6TKF9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G015200 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-07
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 2

Query: 2   GFHMSCIDTWFRSHSSCPSCRQILVVSQC 61
           GFH+SCID W RSHSSCPSCRQILVVS+C
Sbjct: 119 GFHVSCIDAWLRSHSSCPSCRQILVVSRC 147

Query: 62  89
           
Sbjct: 179 147

BLAST of CU156422 vs. TrEMBL
Match: G7J5Z4_MEDTR (Anaphase-promoting complex subunit 11 RING-H2 finger protein OS=Medicago truncatula GN=MTR_3g116000 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-07
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 2

Query: 2   GFHMSCIDTWFRSHSSCPSCRQILVVSQC 61
           GFH+SCID W RSHSSCPSCRQILVVS+C
Sbjct: 126 GFHVSCIDLWLRSHSSCPSCRQILVVSRC 154

Query: 62  89
           
Sbjct: 186 154

BLAST of CU156422 vs. NCBI nr
Match: gi|449455635|ref|XP_004145558.1| (PREDICTED: RING-H2 finger protein ATL8 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-09
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2

Query: 2   GFHMSCIDTWFRSHSSCPSCRQILVVSQCR 61
           GFHMSCIDTWFRSHSSCPSCRQILVVSQC+
Sbjct: 124 GFHMSCIDTWFRSHSSCPSCRQILVVSQCQ 153

Query: 62  92
           
Sbjct: 184 153

BLAST of CU156422 vs. NCBI nr
Match: gi|659105085|ref|XP_008453009.1| (PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-09
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 2

Query: 2   GFHMSCIDTWFRSHSSCPSCRQILVVSQCR 61
           GFH+SCIDTWFRSHSSCPSCRQILVVSQC+
Sbjct: 124 GFHVSCIDTWFRSHSSCPSCRQILVVSQCQ 153

Query: 62  92
           
Sbjct: 184 153

BLAST of CU156422 vs. NCBI nr
Match: gi|848911157|ref|XP_012854057.1| (PREDICTED: RING-H2 finger protein ATL8-like [Erythranthe guttata])

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-07
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 2

Query: 2   GFHMSCIDTWFRSHSSCPSCRQILVVSQCR 61
           GFH+SCIDTW RSHSSCPSCR+ILVV++C+
Sbjct: 131 GFHVSCIDTWLRSHSSCPSCRKILVVARCK 160

Query: 62  92
           
Sbjct: 191 160

BLAST of CU156422 vs. NCBI nr
Match: gi|359806958|ref|NP_001241583.1| (uncharacterized protein LOC100794614 [Glycine max])

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-07
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 2

Query: 2   GFHMSCIDTWFRSHSSCPSCRQILVVSQC 61
           GFH+SCID W RSHSSCPSCRQILVVS+C
Sbjct: 119 GFHVSCIDAWLRSHSSCPSCRQILVVSRC 147

Query: 62  89
           
Sbjct: 179 147

BLAST of CU156422 vs. NCBI nr
Match: gi|502130984|ref|XP_004500836.1| (PREDICTED: RING-H2 finger protein ATL80-like [Cicer arietinum])

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-07
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 2

Query: 2   GFHMSCIDTWFRSHSSCPSCRQILVVSQC 61
           GFH+SCID W RSHSSCPSCRQILVVS+C
Sbjct: 124 GFHVSCIDAWLRSHSSCPSCRQILVVSRC 152

Query: 62  89
           
Sbjct: 184 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATL8_ARATH6.2e-0982.76RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2[more]
ATL80_ARATH1.4e-0879.31RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L5Y2_CUCSA8.7e-1096.67Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664340 PE=4 SV=1[more]
I1K799_SOYBN1.8e-0786.21Uncharacterized protein OS=Glycine max GN=GLYMA_06G015200 PE=4 SV=1[more]
A0A022Q8P8_ERYGU1.8e-0780.00Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014346mg PE=4 SV=1[more]
C6TKF9_SOYBN1.8e-0786.21Uncharacterized protein OS=Glycine max GN=GLYMA_04G015200 PE=2 SV=1[more]
G7J5Z4_MEDTR2.4e-0786.21Anaphase-promoting complex subunit 11 RING-H2 finger protein OS=Medicago truncat... [more]
Match NameE-valueIdentityDescription
gi|449455635|ref|XP_004145558.1|1.2e-0996.67PREDICTED: RING-H2 finger protein ATL8 [Cucumis sativus][more]
gi|659105085|ref|XP_008453009.1|3.6e-0993.33PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo][more]
gi|848911157|ref|XP_012854057.1|2.6e-0780.00PREDICTED: RING-H2 finger protein ATL8-like [Erythranthe guttata][more]
gi|359806958|ref|NP_001241583.1|2.6e-0786.21uncharacterized protein LOC100794614 [Glycine max][more]
gi|502130984|ref|XP_004500836.1|2.6e-0786.21PREDICTED: RING-H2 finger protein ATL80-like [Cicer arietinum][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G664340Csa4G664340gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0003190H0003190EST