Csa4G664340 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G664340
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ring finger protein; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
Location	Chr4 : 23113980 .. 23114537 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCACCTCCGATACGTTCGAGCCTAGGTATGATTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCTTTGATTTGCGTCCTCGGTCTTGTTGCTGTTGCTCGTTGCGCCTGGCTACGCCACCTTGCTGGTGATGGTGGTGGCGCTGGTTCCACTCGTCCTCCGCCGCCTCCTGCTTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACTGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATTCGTGTGCTGCCGCAGTGTGGCCATGGGTTTCACATGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGTCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAACGGCGGAACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG

mRNA sequence

ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCACCTCCGATACGTTCGAGCCTAGGTATGATTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCTTTGATTTGCGTCCTCGGTCTTGTTGCTGTTGCTCGTTGCGCCTGGCTACGCCACCTTGCTGGTGATGGTGGTGGCGCTGGTTCCACTCGTCCTCCGCCGCCTCCTGCTTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACTGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATTCGTGTGCTGCCGCAGTGTGGCCATGGGTTTCACATGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGTCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAACGGCGGAACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG

Coding sequence (CDS)

ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCACCTCCGATACGTTCGAGCCTAGGTATGATTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCTTTGATTTGCGTCCTCGGTCTTGTTGCTGTTGCTCGTTGCGCCTGGCTACGCCACCTTGCTGGTGATGGTGGTGGCGCTGGTTCCACTCGTCCTCCGCCGCCTCCTGCTTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACTGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATTCGTGTGCTGCCGCAGTGTGGCCATGGGTTTCACATGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGTCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAACGGCGGAACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG

Protein sequence

MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTNRFLP*

Homology

[Close]

BLAST of Csa4G664340 vs. Swiss-Prot
Match: ATL80_ARATH (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-56
Identity = 116/192 (60.42%), Postives = 141/192 (73.44%), Query Frame = 1


Query: 4   FRYLAGVNS-SATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLA-GDGG 63
           FR L   N+ S   D      +SD V+ILAALLCALICVLGL+AV+RC WLR LA G+  
Sbjct: 6   FRLLVESNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRT 65

Query: 64  GAGS-TRPPPPP--ASNKGLKKKILRSLPKYTFTAEF--SAQFSDCAICLAEFAVGDEIR 123
            +GS T+ P PP  A+NKGLKKK+L+SLPK TF+ E   S +F++CAICLAEF+ GDE+R
Sbjct: 66  VSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELR 125

Query: 124 VLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVK--- 183
           VLPQCGHGFH++CIDTW  SHSSCPSCRQILVV++C KCGG P SSSS   +E  ++   
Sbjct: 126 VLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRI 185

Query: 184 EEGDDKTNRFLP 186
           ++G+D  N FLP
Sbjct: 186 KQGEDDPNSFLP 197

[Close]

BLAST of Csa4G664340 vs. Swiss-Prot
Match: ATL8_ARATH (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2)

HSP 1 Score: 218.0 bits (554), Expect = 8.7e-56
Identity = 104/180 (57.78%), Postives = 132/180 (73.33%), Query Frame = 1


Query: 4   FRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGA 63
           FR L   NS++ ++   P ++SD V+ILA LLCAL C++GL+AV+RCAWLR +A     +
Sbjct: 6   FRLLQEANSTSPAEA-SPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNR-S 65

Query: 64  GSTRPPPPPASNKGLKKKILRSLPKYTFTAEF--SAQFSDCAICLAEFAVGDEIRVLPQC 123
             T PPP  A+NKGLKKK+LRSLPK T++ +   + +  +CAICL EFA GDE+RVLPQC
Sbjct: 66  DQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQC 125

Query: 124 GHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTN 182
           GHGFH+SCIDTW  SHSSCPSCRQILVV++C KCGG P SSSS    ++R+K+  D   N
Sbjct: 126 GHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPDN 183

[Close]

BLAST of Csa4G664340 vs. Swiss-Prot
Match: ATL45_ARATH (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-38
Identity = 81/168 (48.21%), Postives = 106/168 (63.10%), Query Frame = 1


Query: 24  DSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKIL 83
           ++D V+IL+ALLCAL+CV GL AVARCAWLR L G    A    PPP    NKGLKKK L
Sbjct: 23  ETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP----NKGLKKKAL 82

Query: 84  RSLPKYTFTAEFSA----------------QFSDCAICLAEFAVGDEIRVLPQCGHGFHM 143
           ++LPK T+TA  S                   ++CAIC+ EF+ G+EIR+LP C H FH+
Sbjct: 83  QALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHV 142

Query: 144 SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEE 176
           +CID W  S SSCPSCR+ILV  +C +CG   +++      E++VK++
Sbjct: 143 ACIDKWLTSRSSCPSCRRILVPVKCDRCGHHASTA------ETQVKDQ 180

[Close]

BLAST of Csa4G664340 vs. Swiss-Prot
Match: ATL44_ARATH (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.1e-37
Identity = 81/170 (47.65%), Postives = 98/170 (57.65%), Query Frame = 1


Query: 24  DSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKIL 83
           +SD V+IL+ALLCALICV GL AV RCAWLR     G           P+ NKGLKKK L
Sbjct: 25  ESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGGDS---------PSPNKGLKKKAL 84

Query: 84  RSLPKYTFTAEFSAQ--------FSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFR 143
           +SLP+ TFTA  S           ++CAICL +FA G+EIRVLP CGH FH+ CID W  
Sbjct: 85  QSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLV 144

Query: 144 SHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTNRFLP 186
           S SSCPSCR+IL   +C +CG    +   +     +  +        FLP
Sbjct: 145 SRSSCPSCRRILTPVRCDRCGHASTAEMKDQAHRHQHHQHSSTTIPTFLP 185

[Close]

BLAST of Csa4G664340 vs. Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.5e-27
Identity = 64/132 (48.48%), Postives = 79/132 (59.85%), Query Frame = 1


Query: 18  TFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKG 77
           T +  +D++ VIILAALLCALI  LGL ++ RCA        G G  S+      A   G
Sbjct: 25  TRDMNFDANMVIILAALLCALILALGLNSILRCAMRC-----GFGLSSSAAAGTVADRAG 84

Query: 78  LKKKILRSLPKYTF-TAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRS 137
           LKK+ L+  P   + + E     ++CAICL EFA G+ +RVLP C H FHMSCIDTW  S
Sbjct: 85  LKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVS 144

Query: 138 HSSCPSCRQILV 149
           HSSCP+CR  L+
Sbjct: 145 HSSCPNCRHSLI 151

[Close]

BLAST of Csa4G664340 vs. TrEMBL
Match: A0A0A0L5Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664340 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 1.6e-104
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1


Query: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60
           MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG
Sbjct: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60

Query: 61  GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120
           GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ
Sbjct: 61  GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120

Query: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180
           CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT
Sbjct: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180

Query: 181 NRFLP 186
           NRFLP
Sbjct: 181 NRFLP 185

[Close]

BLAST of Csa4G664340 vs. TrEMBL
Match: W9R4L1_9ROSA (RING-H2 finger protein ATL80 OS=Morus notabilis GN=L484_024820 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.1e-70
Identity = 137/187 (73.26%), Postives = 156/187 (83.42%), Query Frame = 1


Query: 2   RPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGG 61
           R FR L GVNSS+T+ T EP  DSDFV+ILAALLCALICVLGLVA+ARCAWLR L+G G 
Sbjct: 3   RSFRLLGGVNSSSTTPTSEPPVDSDFVVILAALLCALICVLGLVAIARCAWLRRLSGGGS 62

Query: 62  GAGS---TRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVL 121
            A S   +RPPPPP  NKGLKKKILRSLPK +FTA+ + +FSDCAICLAEFA+GDEIR L
Sbjct: 63  SAASASSSRPPPPPP-NKGLKKKILRSLPKLSFTADLAPKFSDCAICLAEFAIGDEIREL 122

Query: 122 PQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDD 181
           PQCGH FH++CIDTW  SHSSCPSCRQILVV++CQKCGGFPASSSS+   E+R+KE  +D
Sbjct: 123 PQCGHAFHVACIDTWLGSHSSCPSCRQILVVARCQKCGGFPASSSSS-EAEARLKER-ED 182

Query: 182 KTNRFLP 186
             NRFLP
Sbjct: 183 HINRFLP 186

[Close]

BLAST of Csa4G664340 vs. TrEMBL
Match: A0A061FF49_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_034434 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-65
Identity = 126/191 (65.97%), Postives = 146/191 (76.44%), Query Frame = 1


Query: 2   RPFRYLAGVNSSATSDTFEP------RYDSDFVIILAALLCALICVLGLVAVARCAWLRH 61
           RPFR L   NSSATS+   P        DSDFV+ILAALLCALICVLGL+AVARCAWLR 
Sbjct: 3   RPFRLLGAANSSATSEPPPPPPEQGATVDSDFVVILAALLCALICVLGLIAVARCAWLRR 62

Query: 62  LAGDGGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEI 121
           L+G      +  P P P +NKGLKKKIL+SLPK TF+AE SA+FSDCAICLAEF VGDEI
Sbjct: 63  LSGSSASNPADTPRPTPPANKGLKKKILKSLPKATFSAESSAKFSDCAICLAEFEVGDEI 122

Query: 122 RVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVK-E 181
           RVLPQCGHGFH++CID W  SHSSCPSCRQILVV++C KCGG P   +S  GT++  + +
Sbjct: 123 RVLPQCGHGFHVACIDMWLGSHSSCPSCRQILVVARCHKCGGLPGPGASTSGTDTEARLK 182

Query: 182 EGDDKTNRFLP 186
           E +D+ NRFLP
Sbjct: 183 EREDEVNRFLP 193

[Close]

BLAST of Csa4G664340 vs. TrEMBL
Match: F6I6U9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00870 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-64
Identity = 128/184 (69.57%), Postives = 142/184 (77.17%), Query Frame = 1


Query: 3   PFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGG 62
           P R+L GVNSSAT+       DSDFV+ILAALLCALICVLGLVAVARCAWLR ++G    
Sbjct: 4   PSRFLGGVNSSATASQESAAVDSDFVVILAALLCALICVLGLVAVARCAWLRRISGAANL 63

Query: 63  AGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCG 122
            G + P  P  +NKGLKKKILRSLPK T+ AE +   +DCAICL EF  GDEIRVLPQCG
Sbjct: 64  PGGSAPQTP--ANKGLKKKILRSLPKVTYAAETAGNLTDCAICLTEFVGGDEIRVLPQCG 123

Query: 123 HGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGG-TESRVKEEGDDKTN 182
           HGFH+ CIDTW  SH SCPSCRQILVV++CQKCGG PASSSS G  TESR+KE  DD  N
Sbjct: 124 HGFHVGCIDTWLGSHCSCPSCRQILVVARCQKCGGVPASSSSTGAETESRLKEREDD-VN 183

Query: 183 RFLP 186
           RFLP
Sbjct: 184 RFLP 184

[Close]

BLAST of Csa4G664340 vs. TrEMBL
Match: A0A067KP60_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08049 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.9e-64
Identity = 127/187 (67.91%), Postives = 147/187 (78.61%), Query Frame = 1


Query: 2   RPFRYLAGVNSSATS-----DTFEP--RYDSDFVIILAALLCALICVLGLVAVARCAWLR 61
           R FR+L   N SAT+     D+ EP    DSDFV+ILAALLCALICVLGL+AVARC WLR
Sbjct: 3   RSFRFLGAGNPSATTTTANTDSSEPPAALDSDFVVILAALLCALICVLGLIAVARCGWLR 62

Query: 62  HLAGDGGGAGSTRPPP---PPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAV 121
            L+     A S  PPP   P ++NKGLKKK+LRSLPK TF+A+F+A+FSDCAICLAEF  
Sbjct: 63  RLSST---ANSQTPPPPSLPSSANKGLKKKVLRSLPKETFSADFTAKFSDCAICLAEFTA 122

Query: 122 GDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESR 179
           GDEIRVLPQCGHGFH++CIDTW  SHSSCPSCRQILVV++CQKCGG PASSSS   +E+R
Sbjct: 123 GDEIRVLPQCGHGFHVNCIDTWLGSHSSCPSCRQILVVARCQKCGGLPASSSSGAESEAR 182

[Close]

BLAST of Csa4G664340 vs. TAIR10
Match: AT1G20823.1 (AT1G20823.1 RING/U-box superfamily protein)

HSP 1 Score: 220.3 bits (560), Expect = 9.8e-58
Identity = 116/192 (60.42%), Postives = 141/192 (73.44%), Query Frame = 1


Query: 4   FRYLAGVNS-SATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLA-GDGG 63
           FR L   N+ S   D      +SD V+ILAALLCALICVLGL+AV+RC WLR LA G+  
Sbjct: 6   FRLLVESNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRT 65

Query: 64  GAGS-TRPPPPP--ASNKGLKKKILRSLPKYTFTAEF--SAQFSDCAICLAEFAVGDEIR 123
            +GS T+ P PP  A+NKGLKKK+L+SLPK TF+ E   S +F++CAICLAEF+ GDE+R
Sbjct: 66  VSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELR 125

Query: 124 VLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVK--- 183
           VLPQCGHGFH++CIDTW  SHSSCPSCRQILVV++C KCGG P SSSS   +E  ++   
Sbjct: 126 VLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRI 185

Query: 184 EEGDDKTNRFLP 186
           ++G+D  N FLP
Sbjct: 186 KQGEDDPNSFLP 197

[Close]

BLAST of Csa4G664340 vs. TAIR10
Match: AT1G76410.1 (AT1G76410.1 RING/U-box superfamily protein)

HSP 1 Score: 218.0 bits (554), Expect = 4.9e-57
Identity = 104/180 (57.78%), Postives = 132/180 (73.33%), Query Frame = 1


Query: 4   FRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGA 63
           FR L   NS++ ++   P ++SD V+ILA LLCAL C++GL+AV+RCAWLR +A     +
Sbjct: 6   FRLLQEANSTSPAEA-SPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNR-S 65

Query: 64  GSTRPPPPPASNKGLKKKILRSLPKYTFTAEF--SAQFSDCAICLAEFAVGDEIRVLPQC 123
             T PPP  A+NKGLKKK+LRSLPK T++ +   + +  +CAICL EFA GDE+RVLPQC
Sbjct: 66  DQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQC 125

Query: 124 GHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTN 182
           GHGFH+SCIDTW  SHSSCPSCRQILVV++C KCGG P SSSS    ++R+K+  D   N
Sbjct: 126 GHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPDN 183

[Close]

BLAST of Csa4G664340 vs. TAIR10
Match: AT4G35480.1 (AT4G35480.1 RING-H2 finger A3B)

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-39
Identity = 81/168 (48.21%), Postives = 106/168 (63.10%), Query Frame = 1


Query: 24  DSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKIL 83
           ++D V+IL+ALLCAL+CV GL AVARCAWLR L G    A    PPP    NKGLKKK L
Sbjct: 23  ETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP----NKGLKKKAL 82

Query: 84  RSLPKYTFTAEFSA----------------QFSDCAICLAEFAVGDEIRVLPQCGHGFHM 143
           ++LPK T+TA  S                   ++CAIC+ EF+ G+EIR+LP C H FH+
Sbjct: 83  QALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHV 142

Query: 144 SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEE 176
           +CID W  S SSCPSCR+ILV  +C +CG   +++      E++VK++
Sbjct: 143 ACIDKWLTSRSSCPSCRRILVPVKCDRCGHHASTA------ETQVKDQ 180

[Close]

BLAST of Csa4G664340 vs. TAIR10
Match: AT2G17450.1 (AT2G17450.1 RING-H2 finger A3A)

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-38
Identity = 81/170 (47.65%), Postives = 98/170 (57.65%), Query Frame = 1


Query: 24  DSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKIL 83
           +SD V+IL+ALLCALICV GL AV RCAWLR     G           P+ NKGLKKK L
Sbjct: 25  ESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGGDS---------PSPNKGLKKKAL 84

Query: 84  RSLPKYTFTAEFSAQ--------FSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFR 143
           +SLP+ TFTA  S           ++CAICL +FA G+EIRVLP CGH FH+ CID W  
Sbjct: 85  QSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLV 144

Query: 144 SHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTNRFLP 186
           S SSCPSCR+IL   +C +CG    +   +     +  +        FLP
Sbjct: 145 SRSSCPSCRRILTPVRCDRCGHASTAEMKDQAHRHQHHQHSSTTIPTFLP 185

[Close]

BLAST of Csa4G664340 vs. TAIR10
Match: AT5G01880.1 (AT5G01880.1 RING/U-box superfamily protein)

HSP 1 Score: 122.1 bits (305), Expect = 3.6e-28
Identity = 64/132 (48.48%), Postives = 79/132 (59.85%), Query Frame = 1


Query: 18  TFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKG 77
           T +  +D++ VIILAALLCALI  LGL ++ RCA        G G  S+      A   G
Sbjct: 25  TRDMNFDANMVIILAALLCALILALGLNSILRCAMRC-----GFGLSSSAAAGTVADRAG 84

Query: 78  LKKKILRSLPKYTF-TAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRS 137
           LKK+ L+  P   + + E     ++CAICL EFA G+ +RVLP C H FHMSCIDTW  S
Sbjct: 85  LKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVS 144

Query: 138 HSSCPSCRQILV 149
           HSSCP+CR  L+
Sbjct: 145 HSSCPNCRHSLI 151

[Close]

BLAST of Csa4G664340 vs. NCBI nr
Match: gi|449455635|ref|XP_004145558.1| (PREDICTED: RING-H2 finger protein ATL8 [Cucumis sativus])

HSP 1 Score: 386.7 bits (992), Expect = 2.2e-104
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1


Query: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60
           MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG
Sbjct: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60

Query: 61  GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120
           GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ
Sbjct: 61  GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120

Query: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180
           CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT
Sbjct: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180

Query: 181 NRFLP 186
           NRFLP
Sbjct: 181 NRFLP 185

[Close]

BLAST of Csa4G664340 vs. NCBI nr
Match: gi|659105085|ref|XP_008453009.1| (PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo])

HSP 1 Score: 382.9 bits (982), Expect = 3.2e-103
Identity = 183/185 (98.92%), Postives = 184/185 (99.46%), Query Frame = 1


Query: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60
           MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG
Sbjct: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60

Query: 61  GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120
            GAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ
Sbjct: 61  AGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120

Query: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180
           CGHGFH+SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT
Sbjct: 121 CGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180

Query: 181 NRFLP 186
           NRFLP
Sbjct: 181 NRFLP 185

[Close]

BLAST of Csa4G664340 vs. NCBI nr
Match: gi|703092078|ref|XP_010094527.1| (RING-H2 finger protein ATL80 [Morus notabilis])

HSP 1 Score: 274.2 bits (700), Expect = 1.6e-70
Identity = 137/187 (73.26%), Postives = 156/187 (83.42%), Query Frame = 1


Query: 2   RPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGG 61
           R FR L GVNSS+T+ T EP  DSDFV+ILAALLCALICVLGLVA+ARCAWLR L+G G 
Sbjct: 3   RSFRLLGGVNSSSTTPTSEPPVDSDFVVILAALLCALICVLGLVAIARCAWLRRLSGGGS 62

Query: 62  GAGS---TRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVL 121
            A S   +RPPPPP  NKGLKKKILRSLPK +FTA+ + +FSDCAICLAEFA+GDEIR L
Sbjct: 63  SAASASSSRPPPPPP-NKGLKKKILRSLPKLSFTADLAPKFSDCAICLAEFAIGDEIREL 122

Query: 122 PQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDD 181
           PQCGH FH++CIDTW  SHSSCPSCRQILVV++CQKCGGFPASSSS+   E+R+KE  +D
Sbjct: 123 PQCGHAFHVACIDTWLGSHSSCPSCRQILVVARCQKCGGFPASSSSS-EAEARLKER-ED 182

Query: 182 KTNRFLP 186
             NRFLP
Sbjct: 183 HINRFLP 186

[Close]

BLAST of Csa4G664340 vs. NCBI nr
Match: gi|590595654|ref|XP_007018117.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 257.7 bits (657), Expect = 1.6e-65
Identity = 126/191 (65.97%), Postives = 146/191 (76.44%), Query Frame = 1


Query: 2   RPFRYLAGVNSSATSDTFEP------RYDSDFVIILAALLCALICVLGLVAVARCAWLRH 61
           RPFR L   NSSATS+   P        DSDFV+ILAALLCALICVLGL+AVARCAWLR 
Sbjct: 3   RPFRLLGAANSSATSEPPPPPPEQGATVDSDFVVILAALLCALICVLGLIAVARCAWLRR 62

Query: 62  LAGDGGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEI 121
           L+G      +  P P P +NKGLKKKIL+SLPK TF+AE SA+FSDCAICLAEF VGDEI
Sbjct: 63  LSGSSASNPADTPRPTPPANKGLKKKILKSLPKATFSAESSAKFSDCAICLAEFEVGDEI 122

Query: 122 RVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVK-E 181
           RVLPQCGHGFH++CID W  SHSSCPSCRQILVV++C KCGG P   +S  GT++  + +
Sbjct: 123 RVLPQCGHGFHVACIDMWLGSHSSCPSCRQILVVARCHKCGGLPGPGASTSGTDTEARLK 182

Query: 182 EGDDKTNRFLP 186
           E +D+ NRFLP
Sbjct: 183 EREDEVNRFLP 193

[Close]

BLAST of Csa4G664340 vs. NCBI nr
Match: gi|802604755|ref|XP_012073601.1| (PREDICTED: RING-H2 finger protein ATL80-like [Jatropha curcas])

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-63
Identity = 127/187 (67.91%), Postives = 147/187 (78.61%), Query Frame = 1


Query: 2   RPFRYLAGVNSSATS-----DTFEP--RYDSDFVIILAALLCALICVLGLVAVARCAWLR 61
           R FR+L   N SAT+     D+ EP    DSDFV+ILAALLCALICVLGL+AVARC WLR
Sbjct: 3   RSFRFLGAGNPSATTTTANTDSSEPPAALDSDFVVILAALLCALICVLGLIAVARCGWLR 62

Query: 62  HLAGDGGGAGSTRPPP---PPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAV 121
            L+     A S  PPP   P ++NKGLKKK+LRSLPK TF+A+F+A+FSDCAICLAEF  
Sbjct: 63  RLSST---ANSQTPPPPSLPSSANKGLKKKVLRSLPKETFSADFTAKFSDCAICLAEFTA 122

Query: 122 GDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESR 179
           GDEIRVLPQCGHGFH++CIDTW  SHSSCPSCRQILVV++CQKCGG PASSSS   +E+R
Sbjct: 123 GDEIRVLPQCGHGFHVNCIDTWLGSHSSCPSCRQILVVARCQKCGGLPASSSSGAESEAR 182

The following BLAST results are available for this feature:

BLAST of Csa4G664340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL80_ARATH	1.7e-56	60.42	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1	[more]
ATL8_ARATH	8.7e-56	57.78	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2	[more]
ATL45_ARATH	2.1e-38	48.21	Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2...	[more]
ATL44_ARATH	3.1e-37	47.65	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2...	[more]
ATL74_ARATH	6.5e-27	48.48	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1	[more]

BLAST of Csa4G664340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5Y2_CUCSA	1.6e-104	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664340 PE=4 SV=1	[more]
W9R4L1_9ROSA	1.1e-70	73.26	RING-H2 finger protein ATL80 OS=Morus notabilis GN=L484_024820 PE=4 SV=1	[more]
A0A061FF49_THECC	1.1e-65	65.97	RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_034434 PE=4 S...	[more]
F6I6U9_VITVI	1.6e-64	69.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00870 PE=4 SV=...	[more]
A0A067KP60_JATCU	7.9e-64	67.91	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08049 PE=4 SV=1	[more]

BLAST of Csa4G664340 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20823.1	9.8e-58	60.42	RING/U-box superfamily protein	[more]
AT1G76410.1	4.9e-57	57.78	RING/U-box superfamily protein	[more]
AT4G35480.1	1.2e-39	48.21	RING-H2 finger A3B	[more]
AT2G17450.1	1.7e-38	47.65	RING-H2 finger A3A	[more]
AT5G01880.1	3.6e-28	48.48	RING/U-box superfamily protein	[more]

BLAST of Csa4G664340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455635\|ref\|XP_004145558.1\|	2.2e-104	100.00	PREDICTED: RING-H2 finger protein ATL8 [Cucumis sativus]	[more]
gi\|659105085\|ref\|XP_008453009.1\|	3.2e-103	98.92	PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo]	[more]
gi\|703092078\|ref\|XP_010094527.1\|	1.6e-70	73.26	RING-H2 finger protein ATL80 [Morus notabilis]	[more]
gi\|590595654\|ref\|XP_007018117.1\|	1.6e-65	65.97	RING/U-box superfamily protein, putative [Theobroma cacao]	[more]
gi\|802604755\|ref\|XP_012073601.1\|	1.1e-63	67.91	PREDICTED: RING-H2 finger protein ATL80-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048507	meristem development
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009743	response to carbohydrate
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU156422	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G664340.1	Csa4G664340.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU156422	CU156422	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..144 score: 9.1
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 102..143 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 102..144 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 100..146 score: 4.0
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 22..149 score: 5.0
None	No IPR available	PANTHER	PTHR14155:SF187	SUBFAMILY NOT NAMED	coord: 22..149 score: 5.0
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 83..150 score: 8.25

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G664340	Cla023467	Watermelon (97103) v1	cuwmB350
Csa4G664340	MELO3C017047	Melon (DHL92) v3.5.1	cumeB313
Csa4G664340	ClCG11G018920	Watermelon (Charleston Gray)	cuwcgB280
Csa4G664340	Lsi04G018300	Bottle gourd (USVL1VR-Ls)	culsiB284
Csa4G664340	MELO3C017047.2	Melon (DHL92) v3.6.1	cumedB298
Csa4G664340	Cla97C11G225050	Watermelon (97103) v2	cuwmbB280
Csa4G664340	Bhi09G002366	Wax gourd	cuwgoB419
Csa4G664340	CSPI04G27140	Wild cucumber (PI 183967)	cpicuB181
Csa4G664340	Cucsa.272320	Cucumber (Gy14) v1	cgycuB387
Csa4G664340	CmaCh09G000330	Cucurbita maxima (Rimu)	cmacuB024
Csa4G664340	CmoCh09G000340	Cucurbita moschata (Rifu)	cmocuB015
Csa4G664340	Cp4.1LG06g00100	Cucurbita pepo (Zucchini)	cpecuB787
Csa4G664340	Cp4.1LG02g08490	Cucurbita pepo (Zucchini)	cpecuB572
Csa4G664340	Carg08612	Silver-seed gourd	carcuB0113
Csa4G664340	Carg21356	Silver-seed gourd	carcuB0388

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G664340	Cucurbita maxima (Rimu)	cmacuB464
Csa4G664340	Cucurbita moschata (Rifu)	cmocuB452
Csa4G664340	Cucumber (Gy14) v2	cgybcuB166
Csa4G664340	Cucumber (Chinese Long) v2	cucuB151