CU152170 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU152170
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 298940 .. 299584 (-)
Sequence length219
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

TTCAGATAGAACTTTCTCTTCATTTATTGTGGTTCGGCAAAGGAAGCTGAACCAATATCCCATGCACTTCAGGATTGGCATTAAGCTCGTGAACTTTGCTGATCAATTCAGCCTCAGACACTTGCTCAGGAAGATCAAATCTCAAAAGACTTGATCCCTACTTCCAGGCACGCCTTCCTCTTCATATTTACATAGGTAAGCGAATCTTTTCTATTCCCC
Library
Library categoryESTs
gynoecious flower library1
Homology
[Close]
BLAST of CU152170 vs. Swiss-Prot
Match: FOLD2_ARATH (Bifunctional protein FolD 2 OS=Arabidopsis thaliana GN=FOLD2 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.5e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = -3 

Query: 29  LPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           LPE+VSEA+LISKVHELN+NP+VHGILVQLPLP H
Sbjct: 76  LPEEVSEADLISKVHELNSNPDVHGILVQLPLPKH 110

Query: 89   134
           
Sbjct: 136  110


HSP 2 Score: 47.8 bits (112), Expect = 6.0e-05
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = -2 

Query: 138 GNRKDSLTYVNMKRKACLEVGIKSFEI 197
           G+RKDS TYVN KRKAC EVGIKSF++
Sbjct: 48  GSRKDSQTYVNTKRKACAEVGIKSFDV 74

Query: 198  219
           
Sbjct: 108  74

[Close]
BLAST of CU152170 vs. Swiss-Prot
Match: FOLD_WOLWR (Bifunctional protein FolD OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=folD PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.8e-08
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = -3 

Query: 29  LPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           LP+ +SE ELI K++ELN +P VHGILVQLPLPNH
Sbjct: 69  LPDNISEDELIEKINELNEDPSVHGILVQLPLPNH 103

Query: 89   134
           
Sbjct: 129  103

[Close]
BLAST of CU152170 vs. Swiss-Prot
Match: FOLD_PARL1 (Bifunctional protein FolD OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=folD PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-07
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = -3 

Query: 29  GSSLLRFDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           G +   F LP + SEA++++KV ELNA+P VHG LVQ P+PNH
Sbjct: 62  GMNSFEFKLPAETSEADVLAKVRELNADPAVHGFLVQFPVPNH 104

Query: 89   148
           
Sbjct: 122  104

Query: 149  158
           
Sbjct: 182  104

[Close]
BLAST of CU152170 vs. Swiss-Prot
Match: FOLD_XANC5 (Bifunctional protein FolD OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=folD PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-07
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = -3 

Query: 35  RRAWK*GSSLLRFDLPEQVSEAELISKVHELNANPEVHGILVQLPLP 94
           R A K G     +DLP+  SEA+L S + ELNA+P++HGIL+QLPLP
Sbjct: 65  RAAEKVGIEAFDYDLPQGTSEAQLASLIDELNADPKIHGILIQLPLP 111

Query: 95   154
           
Sbjct: 125  111

Query: 155  176
           
Sbjct: 185  111

[Close]
BLAST of CU152170 vs. Swiss-Prot
Match: FOLD_XANAC (Bifunctional protein FolD OS=Xanthomonas axonopodis pv. citri (strain 306) GN=folD PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-07
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = -3 

Query: 35  RRAWK*GSSLLRFDLPEQVSEAELISKVHELNANPEVHGILVQLPLP 94
           R A K G     +DLP+  SEA+L S + ELNA+P++HGIL+QLPLP
Sbjct: 65  RAAEKVGIEAFDYDLPQGTSEAQLASLIDELNADPKIHGILIQLPLP 111

Query: 95   154
           
Sbjct: 125  111

Query: 155  176
           
Sbjct: 185  111

[Close]
BLAST of CU152170 vs. TrEMBL
Match: A0A0A0KWH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001540 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-11
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = -3 

Query: 29  GSSLLRFDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           G      DLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH
Sbjct: 142 GIKSFEIDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 184

Query: 89   148
           
Sbjct: 202  184

Query: 149  158
           
Sbjct: 262  184

[Close]
BLAST of CU152170 vs. TrEMBL
Match: A0A0A0KWH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001540 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.4e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -2 

Query: 138 GNRKDSLTYVNMKRKACLEVGIKSFEI 197
           GNRKDSLTYVNMKRKACLEVGIKSFEI
Sbjct: 122 GNRKDSLTYVNMKRKACLEVGIKSFEI 148

Query: 198  219
           
Sbjct: 182  148


HSP 2 Score: 72.8 bits (177), Expect = 1.9e-10
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = -3 

Query: 29  GSSLLRFDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           G + L  DLPEQVSE ELI+KVHELNANPEVHGILVQLPLP H
Sbjct: 69  GINSLDIDLPEQVSEPELIAKVHELNANPEVHGILVQLPLPKH 111

Query: 89   148
           
Sbjct: 129  111

Query: 149  158
           
Sbjct: 189  111

[Close]
BLAST of CU152170 vs. TrEMBL
Match: A0A0J8BES3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g045600 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.5e-02
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = -2 

Query: 138 GNRKDSLTYVNMKRKACLEVGIKSFEI 197
           GNRKDS +YVNMKRKAC EVGI S +I
Sbjct: 49  GNRKDSQSYVNMKRKACAEVGINSLDI 75

Query: 198  219
           
Sbjct: 109  75


HSP 2 Score: 72.4 bits (176), Expect = 2.5e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -3 

Query: 29  DLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           DLPEQ+SEAELISKVHELNANP+VHGILVQLPLP H
Sbjct: 75  DLPEQISEAELISKVHELNANPDVHGILVQLPLPKH 110

Query: 89   137
           
Sbjct: 135  110

[Close]
BLAST of CU152170 vs. TrEMBL
Match: A0A067K8J8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13900 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-02
Identity = 20/27 (74.07%), Postives = 25/27 (92.59%), Query Frame = -2 

Query: 138 GNRKDSLTYVNMKRKACLEVGIKSFEI 197
           G+RKDS +YV+MKRKAC+EVGIKSF +
Sbjct: 48  GHRKDSQSYVSMKRKACVEVGIKSFGV 74

Query: 198  219
           
Sbjct: 108  74


HSP 2 Score: 72.0 bits (175), Expect = 3.3e-10
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = -3 

Query: 29  DLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           DLPEQ+SEAEL+SKVHELNANP+VHGILVQLPLP H
Sbjct: 75  DLPEQISEAELVSKVHELNANPDVHGILVQLPLPKH 110

Query: 89   137
           
Sbjct: 135  110

[Close]
BLAST of CU152170 vs. TrEMBL
Match: A9PIC3_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-02
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = -2 

Query: 138 GNRKDSLTYVNMKRKACLEVGIKSFEI 197
           GNRKDS +YV MKRKAC EVGI+SF++
Sbjct: 48  GNRKDSQSYVGMKRKACAEVGIQSFDM 74

Query: 198  219
           
Sbjct: 108  74


HSP 2 Score: 72.0 bits (175), Expect = 3.3e-10
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = -3 

Query: 29  DLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           DLPEQ+SEAEL+SKVHELNANP+VHGILVQLPLP H
Sbjct: 75  DLPEQISEAELVSKVHELNANPDVHGILVQLPLPKH 110

Query: 89   137
           
Sbjct: 135  110

[Close]
BLAST of CU152170 vs. NCBI nr
Match: gi|449469104|ref|XP_004152261.1| (PREDICTED: bifunctional protein FolD 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = -3 

Query: 29  GSSLLRFDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           G      DLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH
Sbjct: 68  GIKSFEIDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 110

Query: 89   148
           
Sbjct: 128  110

Query: 149  158
           
Sbjct: 188  110

[Close]
BLAST of CU152170 vs. NCBI nr
Match: gi|778689243|ref|XP_011652923.1| (PREDICTED: bifunctional protein FolD 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = -3 

Query: 29  GSSLLRFDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           G      DLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH
Sbjct: 45  GIKSFEIDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 87

Query: 89   148
           
Sbjct: 105  87

Query: 149  158
           
Sbjct: 165  87

[Close]
BLAST of CU152170 vs. NCBI nr
Match: gi|700197629|gb|KGN52787.1| (hypothetical protein Csa_4G001540 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = -3 

Query: 29  GSSLLRFDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           G      DLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH
Sbjct: 142 GIKSFEIDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 184

Query: 89   148
           
Sbjct: 202  184

Query: 149  158
           
Sbjct: 262  184

[Close]
BLAST of CU152170 vs. NCBI nr
Match: gi|659108752|ref|XP_008454370.1| (PREDICTED: bifunctional protein FolD 2 isoform X2 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = -3 

Query: 29  GSSLLRFDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           G      DLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH
Sbjct: 45  GIKSFEIDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 87

Query: 89   148
           
Sbjct: 105  87

Query: 149  158
           
Sbjct: 165  87

[Close]
BLAST of CU152170 vs. NCBI nr
Match: gi|659108749|ref|XP_008454369.1| (PREDICTED: bifunctional protein FolD 2 isoform X1 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = -3 

Query: 29  GSSLLRFDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 88
           G      DLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH
Sbjct: 68  GIKSFEIDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNH 110

Query: 89   148
           
Sbjct: 128  110

Query: 149  158
           
Sbjct: 188  110

The following BLAST results are available for this feature:
BLAST of CU152170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FOLD2_ARATH9.5e-1185.71Bifunctional protein FolD 2 OS=Arabidopsis thaliana GN=FOLD2 PE=2 SV=1[more]
FOLD_WOLWR5.8e-0871.43Bifunctional protein FolD OS=Wolbachia sp. subsp. Drosophila simulans (strain wR... [more]
FOLD_PARL11.3e-0755.81Bifunctional protein FolD OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 130... [more]
FOLD_XANC52.9e-0755.32Bifunctional protein FolD OS=Xanthomonas campestris pv. vesicatoria (strain 85-1... [more]
FOLD_XANAC2.9e-0755.32Bifunctional protein FolD OS=Xanthomonas axonopodis pv. citri (strain 306) GN=fo... [more]
BLAST of CU152170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWH1_CUCSA1.0e-1186.05Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001540 PE=3 SV=1[more]
A0A0A0KWH1_CUCSA6.4e-06100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001540 PE=3 SV=1[more]
A0A0J8BES3_BETVU1.5e-0277.78Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g045600 PE=3 S... [more]
A0A067K8J8_JATCU2.5e-0274.07Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13900 PE=3 SV=1[more]
A9PIC3_POPTR2.5e-0274.07Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
BLAST of CU152170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449469104|ref|XP_004152261.1|3.9e-1286.05PREDICTED: bifunctional protein FolD 2 isoform X1 [Cucumis sativus][more]
gi|778689243|ref|XP_011652923.1|3.9e-1286.05PREDICTED: bifunctional protein FolD 2 isoform X2 [Cucumis sativus][more]
gi|700197629|gb|KGN52787.1|3.9e-1286.05hypothetical protein Csa_4G001540 [Cucumis sativus][more]
gi|659108752|ref|XP_008454370.1|3.9e-1286.05PREDICTED: bifunctional protein FolD 2 isoform X2 [Cucumis melo][more]
gi|659108749|ref|XP_008454369.1|3.9e-1286.05PREDICTED: bifunctional protein FolD 2 isoform X1 [Cucumis melo][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G001540Csa4G001540gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0189857G0189857EST