CU140283 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU140283
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 16346576 .. 16346822 (+)
Sequence length248
The following sequences are available for this feature:

transcribed_cluster sequence

GTAGGGAGGGAGGGAGGAGGATAAGGGTGGGTTCATAGTAGCATATATAAGGAAAGTATAATTCATCAAATAAAACATGACGGGAAATCTAAAGATGACCAGATAAGCATTCGTAACTTATGAGAGTTACTATAGCCAATAAAGGTGCATGGGCTTGAACTAAAAGATAACTTGTGAGAATCAAAAGGACGTAAATTAGGAAAACACTTGCAGCAAAAACACGTAATGAAGAATAGTTGGGTTTGAGG
Library categoryESTs
gynoecious flower library1
BLAST of CU140283 vs. TrEMBL
Match: A5BDX8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041315 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-06
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = -1

Query: 117 FCCKCFPNLRPFDSHKLSFSSSPCTFIGYSNSHK 176
           F C CFP+LRP++ HKL F SSPCTF+GYS+ HK
Sbjct: 789 FGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHK 822

Query: 177 219
           
Sbjct: 849 822

BLAST of CU140283 vs. TrEMBL
Match: A5BMC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041406 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-06
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = -1

Query: 117 FCCKCFPNLRPFDSHKLSFSSSPCTFIGYSNSHK 176
           F C CFP+LRP++ HKL F SSPCTF+GYS+ HK
Sbjct: 543 FGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHK 576

Query: 177 219
           
Sbjct: 603 576

BLAST of CU140283 vs. TrEMBL
Match: A5C219_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023230 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-06
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = -1

Query: 117 FITCFCCKCFPNLRPFDSHKLSFSSSPCTFIGYSNSHK 176
           F+  F C CFP+LRP++SHKL F SS C F+GYS++HK
Sbjct: 91  FLKTFGCTCFPHLRPYNSHKLQFRSSKCLFLGYSSTHK 128

Query: 177 231
           
Sbjct: 151 128

BLAST of CU140283 vs. TrEMBL
Match: A0A151T2P7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_015829 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-06
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = -1

Query: 117 FITCFCCKCFPNLRPFDSHKLSFSSSPCTFIGYSNSHK 176
           F+  F C CFP LRP+ SHKL+F S  C F+GYSNSHK
Sbjct: 663 FLRTFGCACFPFLRPYASHKLNFRSQECVFLGYSNSHK 700

Query: 177 231
           
Sbjct: 723 700

BLAST of CU140283 vs. TrEMBL
Match: A0A151TJ40_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_013359 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-06
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = -1

Query: 117 FITCFCCKCFPNLRPFDSHKLSFSSSPCTFIGYSNSHK 176
           F+  F C CFP LRP+ SHKL+F S  C F+GYSNSHK
Sbjct: 584 FLRTFGCACFPFLRPYASHKLNFRSQECVFLGYSNSHK 621

Query: 177 231
           
Sbjct: 644 621

BLAST of CU140283 vs. NCBI nr
Match: gi|147765953|emb|CAN67819.1| (hypothetical protein VITISV_041315 [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 4.7e-06
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = -1

Query: 117 FCCKCFPNLRPFDSHKLSFSSSPCTFIGYSNSHK 176
           F C CFP+LRP++ HKL F SSPCTF+GYS+ HK
Sbjct: 789 FGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHK 822

Query: 177 219
           
Sbjct: 849 822

BLAST of CU140283 vs. NCBI nr
Match: gi|147854093|emb|CAN83392.1| (hypothetical protein VITISV_041406 [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 4.7e-06
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = -1

Query: 117 FCCKCFPNLRPFDSHKLSFSSSPCTFIGYSNSHK 176
           F C CFP+LRP++ HKL F SSPCTF+GYS+ HK
Sbjct: 543 FGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHK 576

Query: 177 219
           
Sbjct: 603 576

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A5BDX8_VITVI1.9e-0667.65Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041315 PE=4 SV=1[more]
A5BMC8_VITVI1.9e-0667.65Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041406 PE=4 SV=1[more]
A5C219_VITVI3.3e-0660.53Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023230 PE=4 SV=1[more]
A0A151T2P7_CAJCA4.3e-0663.16Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151TJ40_CAJCA4.3e-0663.16Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
Match NameE-valueIdentityDescription
gi|147765953|emb|CAN67819.1|4.7e-0667.65hypothetical protein VITISV_041315 [Vitis vinifera][more]
gi|147854093|emb|CAN83392.1|4.7e-0667.65hypothetical protein VITISV_041406 [Vitis vinifera][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G432470Csa4G432470gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0071503G0071503EST