Csa4G432470 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G432470
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 16346315 .. 16346608 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCCACCCTTATCCTCCTCCCTCCCTCCCACTACTGTCTCCTTTCCACCTATTTCTTCTATCATTGCACCCACCCCTAAGGACGATAATGAAGTTTTGCACAACTCTGTTCCAGTTCCTCATAATTCTGAGAATCAAATTTCTACTAATGTGTATCCTTTAGATACAAGTTCTAATGCAATTTTGCAGGAATATGATGATCCTCCTTCCACTATGGGGATTTATGAAACTTCATCCTCTATGGCTCCTTCTCTTGTTGATGCTCTTCATGCTATAATGCTCATCTTATGA

mRNA sequence

ATGAACCCACCCTTATCCTCCTCCCTCCCTCCCACTACTGTCTCCTTTCCACCTATTTCTTCTATCATTGCACCCACCCCTAAGGACGATAATGAAGTTTTGCACAACTCTGTTCCAGTTCCTCATAATTCTGAGAATCAAATTTCTACTAATGTGTATCCTTTAGATACAAGTTCTAATGCAATTTTGCAGGAATATGATGATCCTCCTTCCACTATGGGGATTTATGAAACTTCATCCTCTATGGCTCCTTCTCTTGTTGATGCTCTTCATGCTATAATGCTCATCTTATGA

Coding sequence (CDS)

ATGAACCCACCCTTATCCTCCTCCCTCCCTCCCACTACTGTCTCCTTTCCACCTATTTCTTCTATCATTGCACCCACCCCTAAGGACGATAATGAAGTTTTGCACAACTCTGTTCCAGTTCCTCATAATTCTGAGAATCAAATTTCTACTAATGTGTATCCTTTAGATACAAGTTCTAATGCAATTTTGCAGGAATATGATGATCCTCCTTCCACTATGGGGATTTATGAAACTTCATCCTCTATGGCTCCTTCTCTTGTTGATGCTCTTCATGCTATAATGCTCATCTTATGA

Protein sequence

MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSNAILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL*

Homology

[Close]

BLAST of Csa4G432470 vs. TrEMBL
Match: A0A0A0KYW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G432470 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN 60
          MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN
Sbjct: 1  MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN 60

Query: 61 AILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL 98
          AILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL
Sbjct: 61 AILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL 97

[Close]

BLAST of Csa4G432470 vs. NCBI nr
Match: gi|700199560|gb|KGN54718.1| (hypothetical protein Csa_4G432470 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 1.7e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN 60
          MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN
Sbjct: 1  MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN 60

Query: 61 AILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL 98
          AILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL
Sbjct: 61 AILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL 97

The following BLAST results are available for this feature:

BLAST of Csa4G432470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYW3_CUCSA	1.2e-47	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G432470 PE=4 SV=1	[more]

BLAST of Csa4G432470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199560\|gb\|KGN54718.1\|	1.7e-47	100.00	hypothetical protein Csa_4G432470 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU140283	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G432470.1	Csa4G432470.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU140283	CU140283	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G432470	Wax gourd	cuwgoB408
Csa4G432470	Cucumber (Gy14) v1	cgycuB062
Csa4G432470	Cucurbita maxima (Rimu)	cmacuB669
Csa4G432470	Cucurbita moschata (Rifu)	cmocuB653
Csa4G432470	Melon (DHL92) v3.5.1	cumeB272
Csa4G432470	Cucurbita pepo (Zucchini)	cpecuB081
Csa4G432470	Bottle gourd (USVL1VR-Ls)	culsiB249
Csa4G432470	Cucumber (Gy14) v2	cgybcuB167
Csa4G432470	Melon (DHL92) v3.6.1	cumedB320