CU136998 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU136998
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionMitochondrial import inner membrane translocase subunit tim-10 isoform 1
LocationChr3 : 13557871 .. 13558190 (-)
Sequence length217
The following sequences are available for this feature:

transcribed_cluster sequence

TTAGAGGCGGCGATGGATCTCCCGGAGAAGGGCCTCTGAACATCAGGAGGTAATAATTAGTAGAAATTGTTGAGAATTAAGTGGAATTGTTAGTGATTGATGTGGAAAATTTTGTTGGTTTTGTAGACCAATTGTTGTTTTCAAGCAAGGGTTTCGAAGTCGTCAATACTGTTTGGTGGAATGTTCAGATATATGCAATTTGATCGGAGATGGTGAT
Library categoryESTs
gynoecious flower library1
BLAST of CU136998 vs. TrEMBL
Match: A0A0A0LA46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198460 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 2

Query: 125 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 184
           RPIVVFKQGFRSRQYCLVECSDICNLIGDGD
Sbjct: 138 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 168

Query: 185 218
           
Sbjct: 198 168

BLAST of CU136998 vs. TrEMBL
Match: A0A0A0LA46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198460 PE=4 SV=1)

HSP 1 Score: 38.5 bits (88), Expect = 4.0e+00
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 3

Query: 3   RGGDGSPGEGPLNIRR 51
           RGGDGSPGEGPLNIRR
Sbjct: 123 RGGDGSPGEGPLNIRR 138


HSP 2 Score: 69.3 bits (168), Expect = 2.1e-09
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 2

Query: 125 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 184
           RP+VVFKQGFRSRQYCLVECSDICNLIGDGD
Sbjct: 78  RPLVVFKQGFRSRQYCLVECSDICNLIGDGD 108

Query: 185 218
           
Sbjct: 138 108

BLAST of CU136998 vs. TrEMBL
Match: F6GYH5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g01760 PE=4 SV=1)

HSP 1 Score: 38.5 bits (88), Expect = 4.0e+00
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = 3

Query: 3  RGGDGSPGEGPLNIRR 51
          RGGDGSPGEGPLNIRR
Sbjct: 63 RGGDGSPGEGPLNIRR 78


HSP 2 Score: 69.3 bits (168), Expect = 2.1e-09
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 2

Query: 125 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 184
           RP+VVFKQGFRSRQYCLVECSDICNLIGDGD
Sbjct: 128 RPLVVFKQGFRSRQYCLVECSDICNLIGDGD 158

Query: 185 218
           
Sbjct: 188 158

BLAST of CU136998 vs. TrEMBL
Match: A0A067JYE1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22560 PE=4 SV=1)

HSP 1 Score: 37.0 bits (84), Expect = 1.2e+01
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 3

Query: 3   RGGDGSPGEGPLNIRR 51
           RGG+GSPGEGPLNIRR
Sbjct: 113 RGGEGSPGEGPLNIRR 128


HSP 2 Score: 68.9 bits (167), Expect = 2.8e-09
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 2

Query: 125 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 184
           RP+VVFKQGFRSRQYCL+ECSDICNLIGDGD
Sbjct: 151 RPLVVFKQGFRSRQYCLIECSDICNLIGDGD 181

Query: 185 218
           
Sbjct: 211 181

BLAST of CU136998 vs. TrEMBL
Match: A0A068VD49_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004143001 PE=4 SV=1)

HSP 1 Score: 34.7 bits (78), Expect = 5.8e+01
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 3

Query: 3   RGGDGSPGEGPLNIRR 51
           RGG GSPGEGPLNIRR
Sbjct: 136 RGGLGSPGEGPLNIRR 151


HSP 2 Score: 68.2 bits (165), Expect = 4.8e-09
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 2

Query: 125 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 184
           RP+VVFK+GFRSRQYCLVECSDICNLIGDGD
Sbjct: 144 RPLVVFKEGFRSRQYCLVECSDICNLIGDGD 174

Query: 185 218
           
Sbjct: 204 174

BLAST of CU136998 vs. NCBI nr
Match: gi|449445931|ref|XP_004140725.1| (PREDICTED: uncharacterized protein LOC101203967 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 2

Query: 125 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 184
           RPIVVFKQGFRSRQYCLVECSDICNLIGDGD
Sbjct: 138 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 168

Query: 185 218
           
Sbjct: 198 168

BLAST of CU136998 vs. NCBI nr
Match: gi|659112369|ref|XP_008456185.1| (PREDICTED: uncharacterized protein LOC103496200 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 2

Query: 125 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 184
           RPIVVFKQGFRSRQYCLVECSDICNLIGDGD
Sbjct: 138 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 168

Query: 185 218
           
Sbjct: 198 168

BLAST of CU136998 vs. NCBI nr
Match: gi|643711518|gb|KDP25025.1| (hypothetical protein JCGZ_22560 [Jatropha curcas])

HSP 1 Score: 72.0 bits (175), Expect = 4.7e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 2

Query: 125 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 184
           RP+VVFKQGFRSRQYCLVECSDICNLIGDGD
Sbjct: 128 RPLVVFKQGFRSRQYCLVECSDICNLIGDGD 158

Query: 185 218
           
Sbjct: 188 158

BLAST of CU136998 vs. NCBI nr
Match: gi|297735671|emb|CBI18358.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 4.7e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 2

Query: 125 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 184
           RP+VVFKQGFRSRQYCLVECSDICNLIGDGD
Sbjct: 77  RPLVVFKQGFRSRQYCLVECSDICNLIGDGD 107

Query: 185 218
           
Sbjct: 137 107

BLAST of CU136998 vs. NCBI nr
Match: gi|802742272|ref|XP_012087280.1| (PREDICTED: uncharacterized protein LOC105646115 isoform X2 [Jatropha curcas])

HSP 1 Score: 72.0 bits (175), Expect = 4.7e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 2

Query: 125 RPIVVFKQGFRSRQYCLVECSDICNLIGDGD 184
           RP+VVFKQGFRSRQYCLVECSDICNLIGDGD
Sbjct: 130 RPLVVFKQGFRSRQYCLVECSDICNLIGDGD 160

Query: 185 218
           
Sbjct: 190 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LA46_CUCSA1.3e-09100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198460 PE=4 SV=1[more]
A0A0A0LA46_CUCSA4.0e+00100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198460 PE=4 SV=1[more]
F6GYH5_VITVI4.0e+00100.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g01760 PE=4 SV=... [more]
A0A067JYE1_JATCU1.2e+0193.75Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22560 PE=4 SV=1[more]
A0A068VD49_COFCA5.8e+0193.75Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004143001 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449445931|ref|XP_004140725.1|2.8e-10100.00PREDICTED: uncharacterized protein LOC101203967 [Cucumis sativus][more]
gi|659112369|ref|XP_008456185.1|2.8e-10100.00PREDICTED: uncharacterized protein LOC103496200 [Cucumis melo][more]
gi|643711518|gb|KDP25025.1|4.7e-1096.77hypothetical protein JCGZ_22560 [Jatropha curcas][more]
gi|297735671|emb|CBI18358.3|4.7e-1096.77unnamed protein product [Vitis vinifera][more]
gi|802742272|ref|XP_012087280.1|4.7e-1096.77PREDICTED: uncharacterized protein LOC105646115 isoform X2 [Jatropha curcas][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G198460Csa3G198460gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0032524G0032524EST