CU135683 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU135683
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	ATP-dependent zinc metalloprotease FtsH
Location	Chr1 : 27194769 .. 27203230 (-)
Sequence length	208

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AATTATTCCAAACTGCAAGAGATTTGGCACCTGTGATCATATTTGTGGAGGATTTTGACCTCTTTGCTGGAGTTCGTGGCAAGTTTATTCATACCAAAGAACAGGATCACGAGGCTTTCATTAACCAACTTCTTGTGGAGCTTGATGGGTTTGAGAAGCAAGATGGAGTAGTTTTGATGGCCACCACTCGGAATTTGAAGCAAATTGA

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU135683 vs. Swiss-Prot
Match: FTSI5_ARATH (Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana GN=FTSHI5 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.9e-30
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LFQTARDLAPVIIFVEDFDLFAGVRGKF+HTK+QDHE+FINQLLVELDGFEKQDGVVLMA
Sbjct: 869 LFQTARDLAPVIIFVEDFDLFAGVRGKFVHTKQQDHESFINQLLVELDGFEKQDGVVLMA 928

Query: 63  TTRNLKQI 122
           TTRN KQI
Sbjct: 929 TTRNHKQI 936

Query: 123  182
           
Sbjct: 989  936

Query: 183  207
           
Sbjct: 1049  936

[Close]

BLAST of CU135683 vs. Swiss-Prot
Match: FTSH_BURP1 (ATP-dependent zinc metalloprotease FtsH OS=Burkholderia pseudomallei (strain 1710b) GN=ftsH PE=3 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-08
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LF+ A+  AP IIF+++ D    VRG  + +   + E  +NQLLVE+DGF+   GV+LMA
Sbjct: 254 LFEQAQQKAPCIIFIDELDALGKVRGAGLASGNDEREQTLNQLLVEMDGFQANSGVILMA 313

Query: 63  TT 122
            T
Sbjct: 314 AT 315

Query: 123  182
           
Sbjct: 374  315

Query: 183  189
           
Sbjct: 434  315

[Close]

BLAST of CU135683 vs. Swiss-Prot
Match: FTSH_SLAHD (ATP-dependent zinc metalloprotease FtsH OS=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) GN=ftsH PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-08
Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LF+ A++ AP IIF+++ D     RG  +     + E  +NQLLVE+DGFEK D VVL+A
Sbjct: 369 LFEQAKEAAPSIIFIDEIDAVGRQRGTGLGGGHDEREQTLNQLLVEMDGFEKNDAVVLIA 428

Query: 63  TTRNL 122
            T  +
Sbjct: 429 ATNRV 433

Query: 123  182
           
Sbjct: 489  433

Query: 183  198
           
Sbjct: 549  433

[Close]

BLAST of CU135683 vs. Swiss-Prot
Match: FTSH_THET8 (ATP-dependent zinc metalloprotease FtsH OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ftsH PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.5e-08
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LF+TA+  AP I+F+++ D     RG  +     + E  +NQLLVE+DGFEK   +V+MA
Sbjct: 240 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 299

Query: 63  TT 122
            T
Sbjct: 300 AT 301

Query: 123  182
           
Sbjct: 360  301

Query: 183  189
           
Sbjct: 420  301

[Close]

BLAST of CU135683 vs. Swiss-Prot
Match: FTSH1_PETMO (ATP-dependent zinc metalloprotease FtsH 1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ftsH1 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LF+TA++ AP IIF+++ D     RG  +     + E  +N LLVELDGF+   GVV+MA
Sbjct: 263 LFKTAKENAPAIIFIDELDAVGRQRGAGLGGGNDEREQTLNALLVELDGFDTSTGVVVMA 322

Query: 63  TT 122
            T
Sbjct: 323 AT 324

Query: 123  182
           
Sbjct: 383  324

Query: 183  189
           
Sbjct: 443  324

[Close]

BLAST of CU135683 vs. TrEMBL
Match: A0A0V0IZ74_SOLCH (Putative ATP-dependent zinc metalloprotease FtsH-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTK+QDHEAFINQLLVELDGFEKQDGVVLMA
Sbjct: 431 LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMA 490

Query: 63  TTRNLKQI 122
           TTRNLKQI
Sbjct: 491 TTRNLKQI 498

Query: 123  182
           
Sbjct: 551  498

Query: 183  207
           
Sbjct: 611  498

[Close]

BLAST of CU135683 vs. TrEMBL
Match: A0A067JUT9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23568 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTK+QDHEAFINQLLVELDGFEKQDGVVLMA
Sbjct: 846 LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMA 905

Query: 63  TTRNLKQI 122
           TTRNLKQI
Sbjct: 906 TTRNLKQI 913

Query: 123  182
           
Sbjct: 966  913

Query: 183  207
           
Sbjct: 1026  913

[Close]

BLAST of CU135683 vs. TrEMBL
Match: K4B5N9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTK+QDHEAFINQLLVELDGFEKQDGVVLMA
Sbjct: 846 LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMA 905

Query: 63  TTRNLKQI 122
           TTRNLKQI
Sbjct: 906 TTRNLKQI 913

Query: 123  182
           
Sbjct: 966  913

Query: 183  207
           
Sbjct: 1026  913

[Close]

BLAST of CU135683 vs. TrEMBL
Match: S8EMQ7_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00780 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTK+QDHEAFINQLLVELDGFEKQDGVVLMA
Sbjct: 759 LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMA 818

Query: 63  TTRNLKQI 122
           TTRNLKQI
Sbjct: 819 TTRNLKQI 826

Query: 123  182
           
Sbjct: 879  826

Query: 183  207
           
Sbjct: 939  826

[Close]

BLAST of CU135683 vs. TrEMBL
Match: B9S7N3_RICCO (Metalloprotease m41 ftsh, putative OS=Ricinus communis GN=RCOM_0610060 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.9e-29
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTK+QDHEAFINQLLVELDGFEKQDGVVLMA
Sbjct: 849 LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKQQDHEAFINQLLVELDGFEKQDGVVLMA 908

Query: 63  TTRNLKQI 122
           TTRN+KQI
Sbjct: 909 TTRNIKQI 916

Query: 123  182
           
Sbjct: 969  916

Query: 183  207
           
Sbjct: 1029  916

[Close]

BLAST of CU135683 vs. NCBI nr
Match: gi|449449669|ref|XP_004142587.1| (PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 8.7e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA
Sbjct: 876 LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 935

Query: 63  TTRNLKQI 122
           TTRNLKQI
Sbjct: 936 TTRNLKQI 943

Query: 123  182
           
Sbjct: 996  943

Query: 183  207
           
Sbjct: 1056  943

[Close]

BLAST of CU135683 vs. NCBI nr
Match: gi|720038850|ref|XP_010268115.1| (PREDICTED: uncharacterized protein LOC104605177 [Nelumbo nucifera])

HSP 1 Score: 137.5 bits (345), Expect = 8.7e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 3


Query: 3    LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
            LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA
Sbjct: 1168 LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 1227

Query: 63   TTRNLKQI 122
            TTRNLKQI
Sbjct: 1228 TTRNLKQI 1235

Query: 123   182
            
Sbjct: 1288  1235

Query: 183   207
            
Sbjct: 1348  1235

[Close]

BLAST of CU135683 vs. NCBI nr
Match: gi|970009648|ref|XP_015065714.1| (PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic isoform X2 [Solanum pennellii])

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTK+QDHEAFINQLLVELDGFEKQDGVVLMA
Sbjct: 842 LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMA 901

Query: 63  TTRNLKQI 122
           TTRNLKQI
Sbjct: 902 TTRNLKQI 909

Query: 123  182
           
Sbjct: 962  909

Query: 183  207
           
Sbjct: 1022  909

[Close]

BLAST of CU135683 vs. NCBI nr
Match: gi|802759535|ref|XP_012089378.1| (PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas])

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTK+QDHEAFINQLLVELDGFEKQDGVVLMA
Sbjct: 846 LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMA 905

Query: 63  TTRNLKQI 122
           TTRNLKQI
Sbjct: 906 TTRNLKQI 913

Query: 123  182
           
Sbjct: 966  913

Query: 183  207
           
Sbjct: 1026  913

[Close]

BLAST of CU135683 vs. NCBI nr
Match: gi|723668204|ref|XP_010315695.1| (PREDICTED: uncharacterized protein LOC101259095 isoform X2 [Solanum lycopersicum])

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 3


Query: 3   LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKEQDHEAFINQLLVELDGFEKQDGVVLMA 62
           LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTK+QDHEAFINQLLVELDGFEKQDGVVLMA
Sbjct: 846 LFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMA 905

Query: 63  TTRNLKQI 122
           TTRNLKQI
Sbjct: 906 TTRNLKQI 913

Query: 123  182
           
Sbjct: 966  913

Query: 183  207
           
Sbjct: 1026  913

The following BLAST results are available for this feature:

BLAST of CU135683 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FTSI5_ARATH	3.9e-30	94.12	Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=A...	[more]
FTSH_BURP1	1.1e-08	45.16	ATP-dependent zinc metalloprotease FtsH OS=Burkholderia pseudomallei (strain 171...	[more]
FTSH_SLAHD	1.1e-08	44.62	ATP-dependent zinc metalloprotease FtsH OS=Slackia heliotrinireducens (strain AT...	[more]
FTSH_THET8	5.5e-08	43.55	ATP-dependent zinc metalloprotease FtsH OS=Thermus thermophilus (strain HB8 / AT...	[more]
FTSH1_PETMO	1.2e-07	45.16	ATP-dependent zinc metalloprotease FtsH 1 OS=Petrotoga mobilis (strain DSM 10674...	[more]

BLAST of CU135683 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0V0IZ74_SOLCH	3.0e-29	98.53	Putative ATP-dependent zinc metalloprotease FtsH-like OS=Solanum chacoense PE=4 ...	[more]
A0A067JUT9_JATCU	3.0e-29	98.53	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23568 PE=4 SV=1	[more]
K4B5N9_SOLLC	3.0e-29	98.53	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
S8EMQ7_9LAMI	3.0e-29	98.53	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00780 PE=4 SV=1	[more]
B9S7N3_RICCO	3.9e-29	97.06	Metalloprotease m41 ftsh, putative OS=Ricinus communis GN=RCOM_0610060 PE=4 SV=1	[more]

BLAST of CU135683 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449669\|ref\|XP_004142587.1\|	8.7e-30	100.00	PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus]	[more]
gi\|720038850\|ref\|XP_010268115.1\|	8.7e-30	100.00	PREDICTED: uncharacterized protein LOC104605177 [Nelumbo nucifera]	[more]
gi\|970009648\|ref\|XP_015065714.1\|	2.5e-29	98.53	PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chlorop...	[more]
gi\|802759535\|ref\|XP_012089378.1\|	2.5e-29	98.53	PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]	[more]
gi\|723668204\|ref\|XP_010315695.1\|	2.5e-29	98.53	PREDICTED: uncharacterized protein LOC101259095 isoform X2 [Solanum lycopersicum...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003959	ATPase_AAA_core
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G674040	Csa1G674040	gene
Csa1G673540	Csa1G673540	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0016542	G0016542	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 2..68 score: 2.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 2..69 score: 2.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..66 score: 2.2
None	No IPR available	PANTHER	PTHR23076	METALLOPROTEASE M41 FTSH	coord: 2..69 score: 1.4
None	No IPR available	PANTHER	PTHR23076:SF58	FTSH EXTRACELLULAR PROTEASE FAMILY PROTEIN	coord: 2..69 score: 1.4