CU135355 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU135355
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 3112300 .. 3113277 (-)
Sequence length216
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GAAAAGAAAAAAAACTACACAAATCAAGGAACAGCCAAACTAGGAGGCTCTCTAATGAAAGAATCCAAGAACCTGACCCCAACATTCCTTTTCATTGCCTCTTCATGATCCAAGATGCCTTCTGGAGTAGTAATCACAACATAACCCCACTGACGTGTTGGAAGTGTTCGTAAACTGTAAGCTTCAATATCCTTTGCCTTGATGTCCTGCCTGTAG
Library
Library categoryESTs
gynoecious flower library1
Homology
[Close]
BLAST of CU135355 vs. Swiss-Prot
Match: R15A5_ARATH (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.2e-17
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = -2 

Query: 57  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           YRQD++AK+IE Y+ RTLPTRQWGYVVITTP+GILDHEEA+KRNVG + L  F
Sbjct: 76  YRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFF 128

Query: 117  176
           
Sbjct: 136  128

Query: 177  216
           
Sbjct: 196  128

[Close]
BLAST of CU135355 vs. Swiss-Prot
Match: R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.4e-16
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = -2 

Query: 57  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           YRQD+KA +I  Y+ RTLPTRQWGY+VITTP+GILDHEEA+KRNVG + L  F
Sbjct: 76  YRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128

Query: 117  176
           
Sbjct: 136  128

Query: 177  216
           
Sbjct: 196  128

[Close]
BLAST of CU135355 vs. Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-09
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = -2 

Query: 57  RQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           R D+  K+IE ++ + LP+RQ+GY+V+TT  GI+DHEEA K+NVG + L  F
Sbjct: 78  RYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFF 129

Query: 117  176
           
Sbjct: 138  129

Query: 177  213
           
Sbjct: 198  129

[Close]
BLAST of CU135355 vs. Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-09
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = -2 

Query: 57  RQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           R D+  K+IE ++ R LP+RQ+GY+V+TT  GI+DHEEA ++NVG + L  F
Sbjct: 78  RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFF 129

Query: 117  176
           
Sbjct: 138  129

Query: 177  213
           
Sbjct: 198  129

[Close]
BLAST of CU135355 vs. Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-09
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = -2 

Query: 57  RQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           R D+  K+IE ++ R LP+RQ+GY+V+TT  GI+DHEEA ++NVG + L  F
Sbjct: 78  RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFF 129

Query: 117  176
           
Sbjct: 138  129

Query: 177  213
           
Sbjct: 198  129

[Close]
BLAST of CU135355 vs. TrEMBL
Match: A0A0A0KDZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G041710 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-18
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = -2 

Query: 57  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVG + L  F
Sbjct: 76  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQVLGFF 128

Query: 117  176
           
Sbjct: 136  128

Query: 177  216
           
Sbjct: 196  128

[Close]
BLAST of CU135355 vs. TrEMBL
Match: A9PCW7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07560g PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.9e-16
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = -2 

Query: 57  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           YRQDIKAKDIEAY LR LPTRQWGYVV+TTP+GILDHEEA+ RNVG + L  F
Sbjct: 76  YRQDIKAKDIEAYRLRNLPTRQWGYVVVTTPDGILDHEEAISRNVGGQVLGYF 128

Query: 117  176
           
Sbjct: 136  128

Query: 177  216
           
Sbjct: 196  128

[Close]
BLAST of CU135355 vs. TrEMBL
Match: M5WVQ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013332mg PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-15
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = -2 

Query: 57  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           YRQD+KAKDIE Y ++ LPTRQWGYVVITTPEG+LDHEEA+KRNVG + L  F
Sbjct: 76  YRQDVKAKDIEEYKMQKLPTRQWGYVVITTPEGVLDHEEAVKRNVGGQVLGYF 128

Query: 117  176
           
Sbjct: 136  128

Query: 177  216
           
Sbjct: 196  128

[Close]
BLAST of CU135355 vs. TrEMBL
Match: B7FH41_MEDTR (Ribosomal protein S8 OS=Medicago truncatula GN=MTR_8g101910 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-15
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = -2 

Query: 57  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           YRQD+KAKDIEAY L TLPT QWGYVVITTP+G+LDHEEA KRNVG + L  F
Sbjct: 76  YRQDLKAKDIEAYRLNTLPTHQWGYVVITTPDGVLDHEEAAKRNVGGQVLGYF 128

Query: 117  176
           
Sbjct: 136  128

Query: 177  216
           
Sbjct: 196  128

[Close]
BLAST of CU135355 vs. TrEMBL
Match: A0A078F0Y0_BRANA (BnaC01g09060D protein OS=Brassica napus GN=BnaC01g09060D PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-15
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = -2 

Query: 57  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           YRQD+KAK+IE Y+ RTLPTRQWGYVV+TTP+GILDHEEA+KRNVG + L  F
Sbjct: 76  YRQDVKAKEIEEYTERTLPTRQWGYVVVTTPDGILDHEEAIKRNVGGQVLGFF 128

Query: 117  176
           
Sbjct: 136  128

Query: 177  216
           
Sbjct: 196  128

[Close]
BLAST of CU135355 vs. NCBI nr
Match: gi|449446227|ref|XP_004140873.1| (PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 4.2e-19
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = -2 

Query: 57  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVG + L  F
Sbjct: 76  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGGQVLGFF 128

Query: 117  176
           
Sbjct: 136  128

Query: 177  216
           
Sbjct: 196  128

[Close]
BLAST of CU135355 vs. NCBI nr
Match: gi|659089827|ref|XP_008445702.1| (PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = -2 

Query: 57  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           YRQDIKAKDIEAY LRTLPT QWGYVVITTPEGILDHEEAMKRNVG + L  F
Sbjct: 76  YRQDIKAKDIEAYRLRTLPTLQWGYVVITTPEGILDHEEAMKRNVGGQVLGFF 128

Query: 117  176
           
Sbjct: 136  128

Query: 177  216
           
Sbjct: 196  128

[Close]
BLAST of CU135355 vs. NCBI nr
Match: gi|502138783|ref|XP_004503527.1| (PREDICTED: 40S ribosomal protein S15a-5 [Cicer arietinum])

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-17
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = -2 

Query: 57  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           YRQD+KAKDIEAY LRTLPT QWGYVVITTP+G+LDHEEAMKRNVG + L  F
Sbjct: 76  YRQDLKAKDIEAYRLRTLPTHQWGYVVITTPDGVLDHEEAMKRNVGGQVLGYF 128

Query: 117  176
           
Sbjct: 136  128

Query: 177  216
           
Sbjct: 196  128

[Close]
BLAST of CU135355 vs. NCBI nr
Match: gi|743796106|ref|XP_011004096.1| (PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica])

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-16
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = -2 

Query: 57  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           YRQDIKAKDIEAY LR LPTRQWGYVVITTP+GILDHEEA+ RNVG + L  F
Sbjct: 76  YRQDIKAKDIEAYRLRNLPTRQWGYVVITTPDGILDHEEAISRNVGGQVLGYF 128

Query: 117  176
           
Sbjct: 136  128

Query: 177  216
           
Sbjct: 196  128

[Close]
BLAST of CU135355 vs. NCBI nr
Match: gi|224105963|ref|XP_002313996.1| (hypothetical protein POPTR_0009s07560g [Populus trichocarpa])

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-16
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = -2 

Query: 57  YRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNVGVRFLDSF 116
           YRQDIKAKDIEAY LR LPTRQWGYVV+TTP+GILDHEEA+ RNVG + L  F
Sbjct: 76  YRQDIKAKDIEAYRLRNLPTRQWGYVVVTTPDGILDHEEAISRNVGGQVLGYF 128

Query: 117  176
           
Sbjct: 136  128

Query: 177  216
           
Sbjct: 196  128

The following BLAST results are available for this feature:
BLAST of CU135355 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R15A5_ARATH5.2e-1775.4740S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1[more]
R15A2_ARATH7.4e-1671.7040S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1[more]
R15A3_ARATH3.0e-0951.9240S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2[more]
RS15A_BRANA4.0e-0951.9240S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3[more]
R15A1_ARATH4.0e-0951.9240S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2[more]
BLAST of CU135355 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDZ7_CUCSA1.9e-1890.57Uncharacterized protein OS=Cucumis sativus GN=Csa_6G041710 PE=4 SV=1[more]
A9PCW7_POPTR8.9e-1679.25Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07560g PE=2 SV=1[more]
M5WVQ2_PRUPE2.6e-1575.47Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013332mg PE=4 SV=1[more]
B7FH41_MEDTR2.6e-1577.36Ribosomal protein S8 OS=Medicago truncatula GN=MTR_8g101910 PE=2 SV=1[more]
A0A078F0Y0_BRANA3.4e-1575.47BnaC01g09060D protein OS=Brassica napus GN=BnaC01g09060D PE=3 SV=1[more]
BLAST of CU135355 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446227|ref|XP_004140873.1|4.2e-1990.57PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis sativus][more]
gi|659089827|ref|XP_008445702.1|1.0e-1786.79PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis melo][more]
gi|502138783|ref|XP_004503527.1|3.0e-1781.13PREDICTED: 40S ribosomal protein S15a-5 [Cicer arietinum][more]
gi|743796106|ref|XP_011004096.1|1.5e-1681.13PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica][more]
gi|224105963|ref|XP_002313996.1|2.0e-1679.25hypothetical protein POPTR_0009s07560g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR000630Ribosomal_S8
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G041710Csa6G041710gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0012116G0012116EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000630Ribosomal protein S8PANTHERPTHR1175840S RIBOSOMAL PROTEIN S15Acoord: 2..55
score: 2.0
IPR000630Ribosomal protein S8unknownSSF56047Ribosomal protein S8coord: 3..47
score: 5.4
NoneNo IPR availableGENE3DG3DSA:3.30.1490.10coord: 3..47
score: 1.6
NoneNo IPR availablePANTHERPTHR11758:SF1140S RIBOSOMAL PROTEIN S15A-2-RELATEDcoord: 2..55
score: 2.0